Wall clock time and date at job start Tue Mar 31 2020 13:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30446 * 125.98437 * 2 1 4 4 N 1.39937 * 108.89628 * 179.97438 * 3 2 1 5 5 H 0.96998 * 125.75708 * 179.97438 * 4 3 2 6 6 C 1.34265 * 108.49014 * 359.74604 * 4 3 2 7 7 C 1.38045 * 107.41382 * 0.40023 * 6 4 3 8 8 C 1.47429 * 126.41161 * 179.87544 * 7 6 4 9 9 O 1.21604 * 120.00018 * 179.68315 * 8 7 6 10 10 N 1.34779 * 119.99925 * 359.67590 * 8 7 6 11 11 C 1.46497 * 119.99883 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47085 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.51766 * 307.79390 * 12 11 10 14 14 C 1.55059 * 110.58197 * 184.99868 * 12 11 10 15 15 C 1.55030 * 102.12935 * 204.93083 * 14 12 11 16 16 C 1.53322 * 103.78366 * 20.86698 * 15 14 12 17 17 C 1.52652 * 115.56243 * 133.64213 * 16 15 14 18 18 N 1.47222 * 87.77949 * 90.04529 * 17 16 15 19 19 C 1.36932 * 135.96431 * 206.41651 * 18 17 16 20 20 H 1.08004 * 120.00066 * 6.79093 * 19 18 17 21 21 C 1.38808 * 119.99884 * 186.79269 * 19 18 17 22 22 N 1.31629 * 119.99858 * 172.34298 * 21 19 18 23 23 Si 1.86797 * 120.00274 * 352.34104 * 21 19 18 24 24 H 1.48502 * 109.47471 * 175.35206 * 23 21 19 25 25 H 1.48504 * 109.47042 * 55.35242 * 23 21 19 26 26 H 1.48501 * 109.47081 * 295.35483 * 23 21 19 27 27 C 1.47219 * 88.06699 * 26.66772 * 18 17 16 28 28 O 1.42842 * 108.32807 * 1.60437 * 16 15 14 29 29 H 1.09000 * 109.47585 * 270.04290 * 1 2 3 30 30 H 1.08996 * 109.47541 * 30.04866 * 1 2 3 31 31 H 1.09005 * 109.46720 * 150.04480 * 1 2 3 32 32 H 1.07995 * 126.28911 * 180.24373 * 6 4 3 33 33 H 0.96994 * 119.99774 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.47350 * 60.00170 * 11 10 8 35 35 H 1.09006 * 109.47215 * 300.00587 * 11 10 8 36 36 H 1.09008 * 110.87007 * 86.77543 * 14 12 11 37 37 H 1.08996 * 110.87404 * 323.09572 * 14 12 11 38 38 H 1.08993 * 110.56812 * 262.29252 * 15 14 12 39 39 H 1.08997 * 110.68568 * 139.49791 * 15 14 12 40 40 H 1.09002 * 113.50148 * 335.31600 * 17 16 15 41 41 H 1.09005 * 113.56183 * 204.78256 * 17 16 15 42 42 H 0.96991 * 120.00047 * 4.89162 * 22 21 19 43 43 H 1.09004 * 113.49685 * 88.06070 * 27 18 17 44 44 H 1.08993 * 113.49991 * 218.60291 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0555 0.0000 4 7 3.6110 0.6443 0.0006 5 1 4.3841 1.2302 0.0004 6 6 3.6439 -0.6979 0.0066 7 6 2.3372 -1.1432 0.0006 8 6 1.8916 -2.5485 0.0014 9 8 0.7039 -2.8097 0.0015 10 7 2.8005 -3.5437 0.0020 11 6 2.3577 -4.9401 0.0022 12 6 3.5786 -5.8623 0.0034 13 1 4.2610 -5.5937 -0.8029 14 6 3.1420 -7.3448 -0.1228 15 6 4.3331 -8.0919 0.5304 16 6 5.0044 -7.0209 1.3982 17 6 5.3607 -7.4522 2.8185 18 7 6.6685 -7.8839 2.2980 19 6 7.6135 -8.8085 2.6547 20 1 7.4120 -9.5055 3.4547 21 6 8.8303 -8.8498 1.9881 22 7 9.7940 -9.6326 2.4253 23 14 9.1003 -7.7945 0.4705 24 1 10.5067 -7.9338 0.0145 25 1 8.8255 -6.3730 0.8009 26 1 8.1833 -8.2378 -0.6101 27 6 6.5182 -6.8819 1.2299 28 8 4.2522 -5.8122 1.2819 29 1 -0.3634 0.0008 1.0276 30 1 -0.3634 0.8895 -0.5146 31 1 -0.3633 -0.8904 -0.5132 32 1 4.5297 -1.3156 0.0122 33 1 3.7478 -3.3353 0.0022 34 1 1.7583 -5.1314 -0.8879 35 1 1.7577 -5.1309 0.8921 36 1 3.0319 -7.6295 -1.1693 37 1 2.2199 -7.5265 0.4292 38 1 5.0225 -8.4541 -0.2322 39 1 3.9782 -8.9174 1.1473 40 1 4.7481 -8.2737 3.1899 41 1 5.4255 -6.6225 3.5225 42 1 9.6311 -10.2328 3.1696 43 1 6.8971 -5.8967 1.5019 44 1 6.8826 -7.2220 0.2606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053633891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:11 Heat of formation + Delta-G solvation = 54.746345 kcal Electronic energy + Delta-G solvation = -26735.073950 eV Core-core repulsion = 22884.250476 eV Total energy + Delta-G solvation = -3850.823473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72224 -40.31844 -39.17721 -36.99003 -34.71552 -33.23347 -32.39227 -32.10096 -31.02198 -29.22907 -28.22038 -27.05645 -25.57802 -24.23993 -22.94472 -21.55924 -21.33818 -20.68411 -19.93475 -19.19519 -18.74708 -17.52229 -16.76302 -16.63529 -15.89145 -15.80822 -15.59301 -14.88323 -14.64973 -14.59830 -14.47102 -13.90257 -13.74050 -13.23217 -13.19778 -13.10150 -13.04813 -12.96459 -12.34231 -12.29534 -12.09416 -11.61347 -11.47761 -11.28765 -11.22574 -11.10106 -10.74094 -10.44860 -10.39244 -10.00085 -9.89728 -9.84555 -9.32917 -9.27094 -9.01858 -8.92558 -8.86218 -7.21691 -6.38393 -3.29250 1.16477 1.86646 2.33830 3.06734 3.28015 3.32902 3.37185 3.58592 3.79470 4.18056 4.29383 4.52896 4.56569 4.66662 4.79129 4.83525 4.84874 4.95410 5.00388 5.10178 5.11940 5.36396 5.40301 5.47195 5.49052 5.55712 5.60512 5.73113 5.77956 5.89133 6.10415 6.17086 6.18581 6.19440 6.25399 6.27987 6.30573 6.33589 6.51391 6.71542 7.01507 7.15914 7.26618 7.42012 8.14597 8.17713 8.91483 9.43313 10.28882 11.14578 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.002815 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.878639 B = 9943.615450 C =10820.671537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.135 3.865 3 N -0.302 5.302 4 N -0.461 5.461 5 H 0.445 0.555 6 C 0.109 3.891 7 C -0.289 4.289 8 C 0.594 3.406 9 O -0.544 6.544 10 N -0.724 5.724 11 C 0.131 3.869 12 C 0.061 3.939 13 H 0.076 0.924 14 C -0.145 4.145 15 C -0.114 4.114 16 C 0.060 3.940 17 C 0.133 3.867 18 N -0.620 5.620 19 C -0.302 4.302 20 H 0.084 0.916 21 C -0.025 4.025 22 N -0.933 5.933 23 Si 1.071 2.929 24 H -0.295 1.295 25 H -0.287 1.287 26 H -0.294 1.294 27 C 0.090 3.910 28 O -0.355 6.355 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.188 0.812 33 H 0.401 0.599 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.261 0.739 43 H 0.051 0.949 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.590 16.685 -8.554 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 N -0.125 5.125 4 N -0.165 5.165 5 H 0.290 0.710 6 C -0.044 4.044 7 C -0.304 4.304 8 C 0.382 3.618 9 O -0.423 6.423 10 N -0.375 5.375 11 C 0.008 3.992 12 C 0.003 3.997 13 H 0.094 0.906 14 C -0.184 4.184 15 C -0.151 4.151 16 C 0.020 3.980 17 C 0.006 3.994 18 N -0.350 5.350 19 C -0.428 4.428 20 H 0.102 0.898 21 C -0.223 4.223 22 N -0.575 5.575 23 Si 0.904 3.096 24 H -0.222 1.222 25 H -0.214 1.214 26 H -0.222 1.222 27 C -0.036 4.036 28 O -0.273 6.273 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.205 0.795 33 H 0.235 0.765 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.120 18.169 -9.441 25.453 hybrid contribution 0.151 -1.086 1.173 1.606 sum -14.969 17.083 -8.268 24.172 Atomic orbital electron populations 1.20363 0.85576 1.04101 1.03706 1.22507 0.97441 0.88642 0.94703 1.77186 0.86245 1.22460 1.26637 1.46119 1.07898 1.05509 1.56953 0.71048 1.23239 0.99147 0.85743 0.96313 1.20297 0.92145 0.94601 1.23333 1.17195 0.85528 0.83458 0.75615 1.90739 1.16282 1.84293 1.50953 1.45765 1.09799 1.05972 1.75942 1.21416 0.95485 0.79145 1.03186 1.23384 0.93226 0.95149 0.87988 0.90641 1.23145 0.99462 0.93824 1.01939 1.22386 0.96076 0.97684 0.99004 1.23690 0.91470 0.84044 0.98831 1.22367 0.87584 0.96792 0.92608 1.45710 1.20520 1.38858 1.29943 1.20093 0.94435 1.09685 1.18579 0.89784 1.25743 0.90644 1.02591 1.03371 1.70920 1.30878 1.26401 1.29289 0.83685 0.74836 0.75565 0.75526 1.22186 1.21350 1.22237 1.23190 0.92404 0.94129 0.93865 1.88775 1.63770 1.39643 1.35141 0.90089 0.91034 0.88501 0.79537 0.76508 0.90052 0.90360 0.90042 0.90135 0.90167 0.89916 0.93156 0.93670 0.92839 0.93180 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.92 36.01 0.36 -0.37 16 2 C 0.14 1.47 7.26 -82.02 -0.60 0.87 16 3 N -0.30 -3.17 12.63 33.89 0.43 -2.74 16 4 N -0.46 -3.31 7.29 30.85 0.22 -3.09 16 5 H 0.44 1.64 8.96 -182.72 -1.64 0.00 16 6 C 0.11 0.78 11.52 -16.56 -0.19 0.59 16 7 C -0.29 -2.98 6.13 -105.07 -0.64 -3.63 16 8 C 0.59 7.01 7.81 -12.52 -0.10 6.91 16 9 O -0.54 -7.95 14.92 5.27 0.08 -7.87 16 10 N -0.72 -7.26 5.54 -61.38 -0.34 -7.60 16 11 C 0.13 1.37 5.41 -4.04 -0.02 1.34 16 12 C 0.06 0.68 3.38 -25.64 -0.09 0.60 16 13 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.15 -1.58 6.60 -24.57 -0.16 -1.74 16 15 C -0.11 -1.67 6.46 -25.49 -0.16 -1.83 16 16 C 0.06 1.04 1.66 -90.66 -0.15 0.88 16 17 C 0.13 2.65 8.20 -8.03 -0.07 2.58 16 18 N -0.62 -15.01 3.66 -184.61 -0.68 -15.68 16 19 C -0.30 -8.56 11.08 -15.06 -0.17 -8.73 16 20 H 0.08 2.51 8.05 -52.48 -0.42 2.08 16 21 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 22 N -0.93 -29.06 13.70 55.49 0.76 -28.30 16 23 Si 1.07 26.16 25.13 -169.99 -4.27 21.89 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -6.52 6.11 56.52 0.35 -6.17 16 26 H -0.29 -6.70 6.63 56.52 0.37 -6.32 16 27 C 0.09 1.86 5.22 -7.88 -0.04 1.82 16 28 O -0.36 -5.30 11.02 -35.23 -0.39 -5.69 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.99 6.55 -51.93 -0.34 0.65 16 32 H 0.19 0.65 7.46 -52.49 -0.39 0.26 16 33 H 0.40 3.25 7.39 -40.82 -0.30 2.95 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 37 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.08 1.24 7.82 -51.93 -0.41 0.83 16 39 H 0.08 1.22 7.81 -51.93 -0.41 0.81 16 40 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.26 8.04 8.73 -40.82 -0.36 7.69 16 43 H 0.05 1.04 7.69 -51.93 -0.40 0.65 16 44 H 0.05 1.07 4.50 -51.93 -0.23 0.84 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -36.08 357.84 -8.48 -44.57 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.56 Total: 0.65 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.13 Total: -1.52 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.40 Total: -57.42 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.31 Total: -13.56 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -4.27 Total: 21.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.08 -8.48 -44.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053633891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.312 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds