Wall clock time and date at job start Tue Mar 31 2020 13:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30446 * 125.98437 * 2 1 4 4 N 1.39937 * 108.89628 * 179.97438 * 3 2 1 5 5 H 0.96998 * 125.75708 * 179.97438 * 4 3 2 6 6 C 1.34265 * 108.49014 * 359.74604 * 4 3 2 7 7 C 1.38045 * 107.41382 * 0.40023 * 6 4 3 8 8 C 1.47429 * 126.41161 * 179.87544 * 7 6 4 9 9 O 1.21604 * 120.00018 * 179.68315 * 8 7 6 10 10 N 1.34779 * 119.99925 * 359.67590 * 8 7 6 11 11 C 1.46497 * 119.99883 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47085 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.51766 * 307.79390 * 12 11 10 14 14 C 1.55059 * 110.58197 * 184.99868 * 12 11 10 15 15 C 1.55030 * 102.12935 * 204.93083 * 14 12 11 16 16 C 1.53322 * 103.78366 * 20.86698 * 15 14 12 17 17 C 1.52652 * 115.56243 * 133.64213 * 16 15 14 18 18 N 1.47222 * 87.77949 * 90.04529 * 17 16 15 19 19 C 1.36932 * 135.96431 * 206.41651 * 18 17 16 20 20 H 1.08004 * 120.00066 * 6.79093 * 19 18 17 21 21 C 1.38808 * 119.99884 * 186.79269 * 19 18 17 22 22 N 1.31629 * 119.99858 * 172.34298 * 21 19 18 23 23 Si 1.86797 * 120.00274 * 352.34104 * 21 19 18 24 24 H 1.48502 * 109.47471 * 175.35206 * 23 21 19 25 25 H 1.48504 * 109.47042 * 55.35242 * 23 21 19 26 26 H 1.48501 * 109.47081 * 295.35483 * 23 21 19 27 27 C 1.47219 * 88.06699 * 26.66772 * 18 17 16 28 28 O 1.42842 * 108.32807 * 1.60437 * 16 15 14 29 29 H 1.09000 * 109.47585 * 270.04290 * 1 2 3 30 30 H 1.08996 * 109.47541 * 30.04866 * 1 2 3 31 31 H 1.09005 * 109.46720 * 150.04480 * 1 2 3 32 32 H 1.07995 * 126.28911 * 180.24373 * 6 4 3 33 33 H 0.96994 * 119.99774 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.47350 * 60.00170 * 11 10 8 35 35 H 1.09006 * 109.47215 * 300.00587 * 11 10 8 36 36 H 1.09008 * 110.87007 * 86.77543 * 14 12 11 37 37 H 1.08996 * 110.87404 * 323.09572 * 14 12 11 38 38 H 1.08993 * 110.56812 * 262.29252 * 15 14 12 39 39 H 1.08997 * 110.68568 * 139.49791 * 15 14 12 40 40 H 1.09002 * 113.50148 * 335.31600 * 17 16 15 41 41 H 1.09005 * 113.56183 * 204.78256 * 17 16 15 42 42 H 0.96991 * 120.00047 * 4.89162 * 22 21 19 43 43 H 1.09004 * 113.49685 * 88.06070 * 27 18 17 44 44 H 1.08993 * 113.49991 * 218.60291 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0555 0.0000 4 7 3.6110 0.6443 0.0006 5 1 4.3841 1.2302 0.0004 6 6 3.6439 -0.6979 0.0066 7 6 2.3372 -1.1432 0.0006 8 6 1.8916 -2.5485 0.0014 9 8 0.7039 -2.8097 0.0015 10 7 2.8005 -3.5437 0.0020 11 6 2.3577 -4.9401 0.0022 12 6 3.5786 -5.8623 0.0034 13 1 4.2610 -5.5937 -0.8029 14 6 3.1420 -7.3448 -0.1228 15 6 4.3331 -8.0919 0.5304 16 6 5.0044 -7.0209 1.3982 17 6 5.3607 -7.4522 2.8185 18 7 6.6685 -7.8839 2.2980 19 6 7.6135 -8.8085 2.6547 20 1 7.4120 -9.5055 3.4547 21 6 8.8303 -8.8498 1.9881 22 7 9.7940 -9.6326 2.4253 23 14 9.1003 -7.7945 0.4705 24 1 10.5067 -7.9338 0.0145 25 1 8.8255 -6.3730 0.8009 26 1 8.1833 -8.2378 -0.6101 27 6 6.5182 -6.8819 1.2299 28 8 4.2522 -5.8122 1.2819 29 1 -0.3634 0.0008 1.0276 30 1 -0.3634 0.8895 -0.5146 31 1 -0.3633 -0.8904 -0.5132 32 1 4.5297 -1.3156 0.0122 33 1 3.7478 -3.3353 0.0022 34 1 1.7583 -5.1314 -0.8879 35 1 1.7577 -5.1309 0.8921 36 1 3.0319 -7.6295 -1.1693 37 1 2.2199 -7.5265 0.4292 38 1 5.0225 -8.4541 -0.2322 39 1 3.9782 -8.9174 1.1473 40 1 4.7481 -8.2737 3.1899 41 1 5.4255 -6.6225 3.5225 42 1 9.6311 -10.2328 3.1696 43 1 6.8971 -5.8967 1.5019 44 1 6.8826 -7.2220 0.2606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053633891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:10 Heat of formation + Delta-G solvation = 25.879224 kcal Electronic energy + Delta-G solvation = -26736.325722 eV Core-core repulsion = 22884.250476 eV Total energy + Delta-G solvation = -3852.075246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39281 -41.60383 -40.08811 -38.35593 -35.68711 -34.48364 -33.91221 -33.12580 -31.87289 -30.46133 -29.03490 -28.48889 -27.20056 -25.32240 -23.82445 -23.09861 -22.33672 -21.43824 -20.77698 -20.65083 -19.50681 -19.41682 -17.74306 -17.54331 -17.34621 -16.74803 -16.40660 -16.23111 -16.09095 -15.41985 -15.28522 -15.23962 -15.09094 -14.74145 -14.44165 -14.12340 -13.89859 -13.72071 -13.53417 -13.42872 -13.17476 -12.94778 -12.70120 -12.63392 -12.37658 -12.18193 -11.99872 -11.98519 -11.70704 -11.41099 -11.30681 -11.01529 -10.85488 -10.52943 -10.30223 -10.14987 -9.72198 -9.23159 -8.67837 -5.49870 0.55100 1.09809 1.37679 1.48753 1.68563 1.80935 2.28625 2.47757 2.54309 2.62347 2.98819 3.25304 3.43348 3.51058 3.64010 3.67870 3.78307 3.97186 4.16598 4.21564 4.29411 4.43812 4.46394 4.49951 4.55325 4.65061 4.65421 4.71255 4.77964 4.85256 4.87621 4.92470 4.98979 5.00736 5.02361 5.13448 5.16466 5.27793 5.46417 5.52133 5.92362 6.05194 6.25842 6.47825 6.67215 6.68906 7.29231 7.34133 8.23238 8.88130 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.002815 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.878639 B = 9943.615450 C =10820.671537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.118 3.882 3 N -0.329 5.329 4 N -0.449 5.449 5 H 0.460 0.540 6 C 0.135 3.865 7 C -0.321 4.321 8 C 0.593 3.407 9 O -0.581 6.581 10 N -0.715 5.715 11 C 0.136 3.864 12 C 0.061 3.939 13 H 0.096 0.904 14 C -0.134 4.134 15 C -0.118 4.118 16 C 0.088 3.912 17 C 0.125 3.875 18 N -0.650 5.650 19 C -0.290 4.290 20 H 0.051 0.949 21 C -0.085 4.085 22 N -0.969 5.969 23 Si 1.108 2.892 24 H -0.305 1.305 25 H -0.259 1.259 26 H -0.266 1.266 27 C 0.083 3.917 28 O -0.361 6.361 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.229 0.771 33 H 0.412 0.588 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.246 0.754 43 H 0.054 0.946 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.311 18.497 -10.684 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 N -0.152 5.152 4 N -0.154 5.154 5 H 0.308 0.692 6 C -0.019 4.019 7 C -0.336 4.336 8 C 0.382 3.618 9 O -0.462 6.462 10 N -0.367 5.367 11 C 0.013 3.987 12 C 0.004 3.996 13 H 0.114 0.886 14 C -0.172 4.172 15 C -0.156 4.156 16 C 0.046 3.954 17 C -0.001 4.001 18 N -0.380 5.380 19 C -0.417 4.417 20 H 0.068 0.932 21 C -0.277 4.277 22 N -0.614 5.614 23 Si 0.934 3.066 24 H -0.233 1.233 25 H -0.184 1.184 26 H -0.192 1.192 27 C -0.042 4.042 28 O -0.279 6.279 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.245 0.755 33 H 0.248 0.752 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.875 20.027 -11.563 28.050 hybrid contribution 0.321 -1.618 1.940 2.546 sum -15.554 18.409 -9.623 25.950 Atomic orbital electron populations 1.20325 0.85426 1.03998 1.03739 1.22746 0.98070 0.89182 0.94983 1.77123 0.87651 1.22849 1.27607 1.46171 1.07506 1.06054 1.55694 0.69154 1.23771 0.99250 0.85741 0.93188 1.20323 0.93541 0.93787 1.25958 1.17401 0.85179 0.84218 0.74969 1.90718 1.17813 1.84874 1.52827 1.45675 1.10198 1.05550 1.75266 1.21353 0.95002 0.79152 1.03211 1.23610 0.93557 0.95726 0.86743 0.88629 1.23148 0.98036 0.92540 1.03479 1.22416 0.97355 0.97197 0.98616 1.23148 0.90020 0.85605 0.96596 1.22552 0.85799 0.96932 0.94826 1.45724 1.21122 1.39130 1.32017 1.19933 0.95406 1.09528 1.16822 0.93154 1.27157 0.90676 1.03649 1.06168 1.71033 1.32323 1.28107 1.29953 0.83290 0.74718 0.75654 0.72977 1.23349 1.18441 1.19184 1.23379 0.95156 0.92965 0.92694 1.88765 1.63540 1.38292 1.37340 0.89991 0.89899 0.89738 0.75503 0.75210 0.88644 0.91830 0.87207 0.89193 0.90643 0.90433 0.92773 0.93515 0.94474 0.92821 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 9.92 71.24 0.71 -0.71 16 2 C 0.12 2.45 7.26 43.51 0.32 2.77 16 3 N -0.33 -6.41 12.63 -46.68 -0.59 -7.00 16 4 N -0.45 -5.20 7.29 -56.32 -0.41 -5.61 16 5 H 0.46 1.96 8.96 -213.43 -1.91 0.05 16 6 C 0.14 1.47 11.52 84.27 0.97 2.44 16 7 C -0.32 -6.02 6.13 -20.15 -0.12 -6.14 16 8 C 0.59 12.93 7.81 86.66 0.68 13.61 16 9 O -0.58 -16.56 14.92 -4.04 -0.06 -16.62 16 10 N -0.72 -12.09 5.54 -466.35 -2.59 -14.67 16 11 C 0.14 2.38 5.41 86.38 0.47 2.85 16 12 C 0.06 1.11 3.38 31.30 0.11 1.21 16 13 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 14 C -0.13 -2.33 6.60 31.99 0.21 -2.12 16 15 C -0.12 -3.09 6.46 31.40 0.20 -2.89 16 16 C 0.09 2.75 1.66 -10.82 -0.02 2.73 16 17 C 0.12 4.80 8.20 83.40 0.68 5.48 16 18 N -0.65 -30.91 3.66 -739.09 -2.70 -33.61 16 19 C -0.29 -16.72 11.08 84.03 0.93 -15.78 16 20 H 0.05 3.15 8.05 -2.91 -0.02 3.13 16 21 C -0.08 -5.02 5.50 84.86 0.47 -4.55 16 22 N -0.97 -62.18 13.70 21.65 0.30 -61.88 16 23 Si 1.11 51.54 25.13 68.60 1.72 53.26 16 24 H -0.31 -14.65 7.11 99.48 0.71 -13.95 16 25 H -0.26 -10.78 6.11 99.48 0.61 -10.17 16 26 H -0.27 -11.01 6.63 99.48 0.66 -10.35 16 27 C 0.08 3.20 5.22 83.50 0.44 3.64 16 28 O -0.36 -9.46 11.02 -148.98 -1.64 -11.11 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.76 6.55 -2.38 -0.02 1.75 16 32 H 0.23 0.40 7.46 -2.91 -0.02 0.37 16 33 H 0.41 4.96 7.39 -92.71 -0.69 4.28 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.09 1.44 8.05 -2.39 -0.02 1.42 16 38 H 0.07 2.08 7.82 -2.39 -0.02 2.06 16 39 H 0.08 2.12 7.81 -2.39 -0.02 2.10 16 40 H 0.05 2.02 7.91 -2.39 -0.02 2.00 16 41 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.25 15.90 8.73 -92.72 -0.81 15.09 16 43 H 0.05 2.05 7.69 -2.38 -0.02 2.03 16 44 H 0.06 2.09 4.50 -2.39 -0.01 2.08 16 Total: -1.00 -81.20 357.84 -1.67 -82.87 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -1.73 Total: 11.85 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 6.03 Total: 2.52 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -5.99 Total: -122.78 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -1.70 Total: -27.73 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 1.72 Total: 53.26 kcal Total: -81.20 -1.67 -82.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053633891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.750 kcal (2) G-P(sol) polarization free energy of solvation -81.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds