Wall clock time and date at job start Tue Mar 31 2020 12:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00392 * 2 1 4 4 H 1.48497 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47057 * 300.00099 * 3 2 1 6 6 H 1.48504 * 109.46962 * 60.00156 * 3 2 1 7 7 C 1.38817 * 119.99176 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99257 * 164.48266 * 7 2 1 9 9 N 1.36933 * 120.00527 * 344.47445 * 7 2 1 10 10 C 1.47090 * 121.00708 * 155.93106 * 9 7 2 11 11 C 1.53259 * 109.25726 * 116.47017 * 10 9 7 12 12 N 1.46551 * 109.24116 * 45.97331 * 11 10 9 13 13 N 1.39752 * 127.32430 * 161.36243 * 12 11 10 14 14 C 1.31011 * 108.17889 * 179.54573 * 13 12 11 15 15 C 1.40075 * 108.25249 * 0.14117 * 14 13 12 16 16 C 1.50703 * 126.12585 * 180.02562 * 15 14 13 17 17 N 1.46503 * 109.47283 * 260.03104 * 16 15 14 18 18 C 1.34775 * 119.99709 * 179.97438 * 17 16 15 19 19 O 1.21282 * 120.00177 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.99679 * 179.97438 * 18 17 16 21 21 H 1.08999 * 110.28161 * 305.63808 * 20 18 17 22 22 C 1.54947 * 110.30787 * 67.83680 * 20 18 17 23 23 C 1.55311 * 100.93989 * 155.35696 * 22 20 18 24 24 C 1.54378 * 102.25174 * 325.86536 * 23 22 20 25 25 O 1.43235 * 107.59217 * 21.35818 * 24 23 22 26 26 C 1.34647 * 107.75339 * 0.06874 * 15 14 13 27 27 C 1.47486 * 121.00375 * 335.87329 * 9 7 2 28 28 H 0.96996 * 119.99763 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.51352 * 356.52138 * 10 9 7 30 30 H 1.09005 * 109.51237 * 236.41133 * 10 9 7 31 31 H 1.08997 * 109.50853 * 165.90360 * 11 10 9 32 32 H 1.09002 * 109.50702 * 285.99575 * 11 10 9 33 33 H 1.07997 * 125.87592 * 180.17437 * 14 13 12 34 34 H 1.08999 * 109.46505 * 20.02836 * 16 15 14 35 35 H 1.08999 * 109.47348 * 140.02578 * 16 15 14 36 36 H 0.96995 * 120.00030 * 359.97438 * 17 16 15 37 37 H 1.08998 * 111.12575 * 273.27867 * 22 20 18 38 38 H 1.08997 * 111.12464 * 37.44072 * 22 20 18 39 39 H 1.09007 * 110.84511 * 207.67556 * 23 22 20 40 40 H 1.08998 * 111.02360 * 84.13887 * 23 22 20 41 41 H 1.09006 * 109.83200 * 261.84061 * 24 23 22 42 42 H 1.09004 * 109.82817 * 140.87236 * 24 23 22 43 43 H 1.08997 * 109.89791 * 103.53713 * 27 9 7 44 44 H 1.09001 * 109.96566 * 342.29725 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2023 -0.0005 8 1 3.0607 -1.2192 -0.2508 9 7 1.3629 -2.3666 0.3163 10 6 1.8642 -3.6655 -0.1581 11 6 2.2719 -4.5206 1.0467 12 7 1.2215 -4.4508 2.0662 13 7 1.0142 -5.3317 3.1310 14 6 -0.0217 -4.9110 3.8139 15 6 -0.5083 -3.7490 3.2015 16 6 -1.6907 -2.9331 3.6569 17 7 -2.8607 -3.2721 2.8430 18 6 -4.0406 -2.6626 3.0724 19 8 -4.1340 -1.8339 3.9529 20 6 -5.2440 -3.0110 2.2348 21 1 -5.0146 -2.8915 1.1759 22 6 -5.7014 -4.4621 2.5278 23 6 -7.1996 -4.3857 2.1258 24 6 -7.5740 -2.9435 2.5295 25 8 -6.3611 -2.1847 2.5992 26 6 0.2689 -3.4921 2.1324 27 6 0.1427 -2.3563 1.1447 28 1 -0.4849 0.8400 -0.0004 29 1 2.7290 -3.5086 -0.8026 30 1 1.0804 -4.1758 -0.7181 31 1 2.4042 -5.5553 0.7306 32 1 3.2074 -4.1440 1.4604 33 1 -0.4299 -5.3792 4.6973 34 1 -1.9009 -3.1513 4.7039 35 1 -1.4651 -1.8726 3.5450 36 1 -2.7861 -3.9352 2.1390 37 1 -5.1634 -5.1769 1.9051 38 1 -5.5901 -4.7031 3.5849 39 1 -7.7892 -5.1111 2.6867 40 1 -7.3247 -4.5333 1.0532 41 1 -8.0642 -2.9474 3.5031 42 1 -8.2384 -2.5108 1.7815 43 1 -0.7343 -2.5067 0.5153 44 1 0.0619 -1.4083 1.6766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069851617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:56 Heat of formation + Delta-G solvation = 24.004927 kcal Electronic energy + Delta-G solvation = -27423.954560 eV Core-core repulsion = 23571.798038 eV Total energy + Delta-G solvation = -3852.156521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02288 -40.11896 -38.23709 -36.32686 -34.75327 -33.04624 -32.33968 -31.35970 -30.27306 -30.02712 -28.52453 -26.10271 -25.01207 -23.64286 -23.09782 -21.89247 -21.77105 -20.25233 -20.06654 -18.46139 -17.59712 -16.89994 -16.73718 -16.04321 -15.70337 -15.42193 -15.20908 -14.88585 -14.66949 -14.25787 -13.90851 -13.69530 -13.57845 -13.42488 -13.29549 -13.15371 -12.58687 -12.48397 -12.09052 -11.89923 -11.71150 -11.61437 -11.58553 -11.32175 -11.13776 -11.00473 -10.89199 -10.73821 -10.20719 -10.18810 -10.09229 -9.98733 -9.35511 -8.92682 -8.75112 -8.57405 -7.94796 -7.09929 -6.02501 -3.45425 2.38838 2.76372 2.88467 2.98471 3.28938 3.37281 3.38928 3.42915 3.98029 4.22014 4.30850 4.58613 4.73082 4.92795 4.94564 4.96455 5.04750 5.18915 5.19425 5.35764 5.42025 5.46674 5.50937 5.53474 5.58843 5.59371 5.62374 5.69965 5.83821 5.84586 6.13066 6.20295 6.35269 6.39292 6.52379 6.67743 6.82455 6.89329 7.06150 7.13088 7.55762 7.59130 7.77783 8.07980 8.20965 8.47259 8.90895 9.53303 10.05546 11.08544 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.004004 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.117473 B = 6991.919461 C = 8533.359230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.009 3.991 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.596 5.596 10 C 0.129 3.871 11 C 0.113 3.887 12 N -0.358 5.358 13 N -0.318 5.318 14 C 0.056 3.944 15 C -0.288 4.288 16 C 0.211 3.789 17 N -0.716 5.716 18 C 0.512 3.488 19 O -0.527 6.527 20 C 0.064 3.936 21 H 0.098 0.902 22 C -0.144 4.144 23 C -0.154 4.154 24 C 0.048 3.952 25 O -0.353 6.353 26 C 0.120 3.880 27 C 0.230 3.770 28 H 0.260 0.740 29 H 0.084 0.916 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.175 0.825 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.399 0.601 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.411 -11.831 2.384 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.737 3.263 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.319 5.319 10 C 0.001 3.999 11 C -0.010 4.010 12 N -0.139 5.139 13 N -0.138 5.138 14 C -0.130 4.130 15 C -0.301 4.301 16 C 0.088 3.912 17 N -0.368 5.368 18 C 0.296 3.704 19 O -0.402 6.402 20 C 0.003 3.997 21 H 0.116 0.884 22 C -0.182 4.182 23 C -0.192 4.192 24 C -0.029 4.029 25 O -0.272 6.272 26 C -0.011 4.011 27 C 0.104 3.896 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.192 0.808 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.233 0.767 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.504 -11.745 2.868 14.781 hybrid contribution -0.118 0.809 -0.325 0.880 sum -8.621 -10.935 2.543 14.156 Atomic orbital electron populations 1.69940 1.05239 1.26260 1.53152 1.25040 0.95456 0.98601 0.99945 0.86140 0.79205 0.83350 0.77559 1.20178 1.21428 1.21209 1.19198 0.92490 0.83896 1.43805 0.90824 1.44203 1.29253 1.01381 1.57066 1.21269 0.99268 0.87376 0.92007 1.22552 0.88734 1.01509 0.88228 1.48503 1.24045 1.19363 1.21981 1.77171 1.19890 1.16517 1.00231 1.23672 0.94499 0.95267 0.99592 1.19426 1.05134 1.03214 1.02297 1.19310 0.80379 0.98083 0.93460 1.46111 1.09251 1.43447 1.38036 1.20314 0.83940 0.81575 0.84526 1.90710 1.84550 1.32329 1.32614 1.22870 0.87475 0.90490 0.98915 0.88398 1.23235 0.96069 0.95485 1.03446 1.23128 0.96033 0.97463 1.02562 1.23194 0.87688 0.90597 1.01397 1.88554 1.13765 1.34774 1.90070 1.22594 0.88492 0.92812 0.97247 1.19927 0.89300 0.92264 0.88152 0.93022 0.89722 0.94641 0.90192 0.90586 0.80756 0.91310 0.90758 0.76742 0.88964 0.89750 0.89748 0.90106 0.91179 0.91091 0.92559 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 11.07 55.49 0.61 -23.93 16 2 C 0.01 0.24 5.00 -17.43 -0.09 0.15 16 3 Si 0.91 20.83 29.58 -169.99 -5.03 15.80 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.27 -6.74 9.66 -15.06 -0.15 -6.89 16 8 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 9 N -0.60 -13.72 3.01 -172.97 -0.52 -14.24 16 10 C 0.13 2.37 6.49 -3.59 -0.02 2.34 16 11 C 0.11 1.89 7.45 -3.88 -0.03 1.86 16 12 N -0.36 -6.72 4.03 -56.93 -0.23 -6.95 16 13 N -0.32 -5.75 12.61 30.70 0.39 -5.36 16 14 C 0.06 0.90 11.97 -17.21 -0.21 0.69 16 15 C -0.29 -4.89 5.46 -105.20 -0.57 -5.47 16 16 C 0.21 3.39 5.95 -5.19 -0.03 3.36 16 17 N -0.72 -10.30 5.55 -61.47 -0.34 -10.64 16 18 C 0.51 8.16 7.17 -10.99 -0.08 8.08 16 19 O -0.53 -10.73 16.55 -13.77 -0.23 -10.96 16 20 C 0.06 0.81 3.86 -26.86 -0.10 0.70 16 21 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 22 C -0.14 -1.28 6.56 -24.48 -0.16 -1.44 16 23 C -0.15 -1.15 7.02 -24.78 -0.17 -1.32 16 24 C 0.05 0.47 7.79 37.88 0.30 0.77 16 25 O -0.35 -5.19 10.61 -54.56 -0.58 -5.77 16 26 C 0.12 2.34 6.71 -82.16 -0.55 1.78 16 27 C 0.23 5.12 5.10 -4.49 -0.02 5.10 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.40 4.97 8.46 -40.82 -0.35 4.62 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 39 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.11 2.76 6.47 -51.93 -0.34 2.42 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -32.46 363.42 -8.90 -41.36 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.56 Total: 5.50 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -1.89 Total: 9.72 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.09 Total: -61.12 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.81 Total: -16.73 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.46 -8.90 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069851617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.364 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds