Wall clock time and date at job start Tue Mar 31 2020 12:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00392 * 2 1 4 4 H 1.48497 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47057 * 300.00099 * 3 2 1 6 6 H 1.48504 * 109.46962 * 60.00156 * 3 2 1 7 7 C 1.38817 * 119.99176 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99257 * 164.48266 * 7 2 1 9 9 N 1.36933 * 120.00527 * 344.47445 * 7 2 1 10 10 C 1.47090 * 121.00708 * 155.93106 * 9 7 2 11 11 C 1.53259 * 109.25726 * 116.47017 * 10 9 7 12 12 N 1.46551 * 109.24116 * 45.97331 * 11 10 9 13 13 N 1.39752 * 127.32430 * 161.36243 * 12 11 10 14 14 C 1.31011 * 108.17889 * 179.54573 * 13 12 11 15 15 C 1.40075 * 108.25249 * 0.14117 * 14 13 12 16 16 C 1.50703 * 126.12585 * 180.02562 * 15 14 13 17 17 N 1.46503 * 109.47283 * 260.03104 * 16 15 14 18 18 C 1.34775 * 119.99709 * 179.97438 * 17 16 15 19 19 O 1.21282 * 120.00177 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.99679 * 179.97438 * 18 17 16 21 21 H 1.08999 * 110.28161 * 305.63808 * 20 18 17 22 22 C 1.54947 * 110.30787 * 67.83680 * 20 18 17 23 23 C 1.55311 * 100.93989 * 155.35696 * 22 20 18 24 24 C 1.54378 * 102.25174 * 325.86536 * 23 22 20 25 25 O 1.43235 * 107.59217 * 21.35818 * 24 23 22 26 26 C 1.34647 * 107.75339 * 0.06874 * 15 14 13 27 27 C 1.47486 * 121.00375 * 335.87329 * 9 7 2 28 28 H 0.96996 * 119.99763 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.51352 * 356.52138 * 10 9 7 30 30 H 1.09005 * 109.51237 * 236.41133 * 10 9 7 31 31 H 1.08997 * 109.50853 * 165.90360 * 11 10 9 32 32 H 1.09002 * 109.50702 * 285.99575 * 11 10 9 33 33 H 1.07997 * 125.87592 * 180.17437 * 14 13 12 34 34 H 1.08999 * 109.46505 * 20.02836 * 16 15 14 35 35 H 1.08999 * 109.47348 * 140.02578 * 16 15 14 36 36 H 0.96995 * 120.00030 * 359.97438 * 17 16 15 37 37 H 1.08998 * 111.12575 * 273.27867 * 22 20 18 38 38 H 1.08997 * 111.12464 * 37.44072 * 22 20 18 39 39 H 1.09007 * 110.84511 * 207.67556 * 23 22 20 40 40 H 1.08998 * 111.02360 * 84.13887 * 23 22 20 41 41 H 1.09006 * 109.83200 * 261.84061 * 24 23 22 42 42 H 1.09004 * 109.82817 * 140.87236 * 24 23 22 43 43 H 1.08997 * 109.89791 * 103.53713 * 27 9 7 44 44 H 1.09001 * 109.96566 * 342.29725 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2023 -0.0005 8 1 3.0607 -1.2192 -0.2508 9 7 1.3629 -2.3666 0.3163 10 6 1.8642 -3.6655 -0.1581 11 6 2.2719 -4.5206 1.0467 12 7 1.2215 -4.4508 2.0662 13 7 1.0142 -5.3317 3.1310 14 6 -0.0217 -4.9110 3.8139 15 6 -0.5083 -3.7490 3.2015 16 6 -1.6907 -2.9331 3.6569 17 7 -2.8607 -3.2721 2.8430 18 6 -4.0406 -2.6626 3.0724 19 8 -4.1340 -1.8339 3.9529 20 6 -5.2440 -3.0110 2.2348 21 1 -5.0146 -2.8915 1.1759 22 6 -5.7014 -4.4621 2.5278 23 6 -7.1996 -4.3857 2.1258 24 6 -7.5740 -2.9435 2.5295 25 8 -6.3611 -2.1847 2.5992 26 6 0.2689 -3.4921 2.1324 27 6 0.1427 -2.3563 1.1447 28 1 -0.4849 0.8400 -0.0004 29 1 2.7290 -3.5086 -0.8026 30 1 1.0804 -4.1758 -0.7181 31 1 2.4042 -5.5553 0.7306 32 1 3.2074 -4.1440 1.4604 33 1 -0.4299 -5.3792 4.6973 34 1 -1.9009 -3.1513 4.7039 35 1 -1.4651 -1.8726 3.5450 36 1 -2.7861 -3.9352 2.1390 37 1 -5.1634 -5.1769 1.9051 38 1 -5.5901 -4.7031 3.5849 39 1 -7.7892 -5.1111 2.6867 40 1 -7.3247 -4.5333 1.0532 41 1 -8.0642 -2.9474 3.5031 42 1 -8.2384 -2.5108 1.7815 43 1 -0.7343 -2.5067 0.5153 44 1 0.0619 -1.4083 1.6766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069851617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:54 Heat of formation + Delta-G solvation = 1.706370 kcal Electronic energy + Delta-G solvation = -27424.921498 eV Core-core repulsion = 23571.798038 eV Total energy + Delta-G solvation = -3853.123459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.43856 -41.20129 -39.36223 -37.96887 -36.13759 -34.65938 -33.31246 -32.80560 -31.84493 -31.14967 -29.81876 -27.80023 -26.40220 -25.17985 -24.22315 -23.28276 -22.57411 -21.61745 -21.34068 -19.98428 -18.71755 -18.54670 -17.95045 -17.41345 -16.98504 -16.64181 -16.41939 -16.41332 -15.94372 -15.55473 -15.47653 -15.11066 -14.98490 -14.76977 -14.52642 -14.22742 -13.96483 -13.92440 -13.35725 -13.14624 -12.98085 -12.91294 -12.76931 -12.69532 -12.62674 -12.32256 -12.26598 -12.03960 -11.88990 -11.81252 -11.61864 -11.06817 -10.79688 -10.46501 -10.07337 -10.06127 -9.39083 -8.95821 -8.00009 -5.43312 0.92182 1.43968 1.47970 1.52502 1.56021 1.60295 1.64556 2.27085 2.44148 3.04706 3.19711 3.42911 3.46854 3.60742 3.73167 3.82789 3.94034 4.11261 4.17372 4.18081 4.20222 4.24435 4.37392 4.39045 4.47296 4.75182 4.78463 4.79263 4.81930 4.87777 4.90092 4.93489 4.99033 5.02142 5.21822 5.23728 5.36570 5.42532 5.58076 5.75496 5.94363 6.08781 6.19551 6.58762 6.80364 6.98397 7.24293 7.64989 8.15639 9.09345 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.004004 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.117473 B = 6991.919461 C = 8533.359230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.042 4.042 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.296 1.296 7 C -0.267 4.267 8 H 0.080 0.920 9 N -0.616 5.616 10 C 0.128 3.872 11 C 0.117 3.883 12 N -0.366 5.366 13 N -0.326 5.326 14 C 0.069 3.931 15 C -0.274 4.274 16 C 0.217 3.783 17 N -0.703 5.703 18 C 0.507 3.493 19 O -0.579 6.579 20 C 0.061 3.939 21 H 0.109 0.891 22 C -0.137 4.137 23 C -0.143 4.143 24 C 0.036 3.964 25 O -0.395 6.395 26 C 0.097 3.903 27 C 0.249 3.751 28 H 0.252 0.748 29 H 0.099 0.901 30 H 0.042 0.958 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.216 0.784 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.411 0.589 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.037 0.963 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.310 -14.629 2.367 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.238 4.238 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.223 1.223 7 C -0.396 4.396 8 H 0.098 0.902 9 N -0.340 5.340 10 C 0.002 3.998 11 C -0.006 4.006 12 N -0.148 5.148 13 N -0.145 5.145 14 C -0.117 4.117 15 C -0.287 4.287 16 C 0.093 3.907 17 N -0.355 5.355 18 C 0.294 3.706 19 O -0.459 6.459 20 C 0.000 4.000 21 H 0.127 0.873 22 C -0.174 4.174 23 C -0.180 4.180 24 C -0.040 4.040 25 O -0.314 6.314 26 C -0.035 4.035 27 C 0.122 3.878 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.060 0.940 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.232 0.768 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.247 0.753 37 H 0.136 0.864 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.055 0.945 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.370 -14.607 2.814 17.069 hybrid contribution -0.150 1.633 -0.296 1.666 sum -8.520 -12.974 2.519 15.725 Atomic orbital electron populations 1.70086 1.06445 1.26105 1.55020 1.25703 0.96070 1.01291 1.00744 0.85262 0.78811 0.80043 0.76672 1.18782 1.21660 1.22348 1.19532 0.92906 0.84977 1.42177 0.90234 1.44436 1.29297 1.02514 1.57718 1.21441 0.99808 0.85460 0.93134 1.22540 0.88036 1.02932 0.87062 1.48685 1.24164 1.19251 1.22673 1.77172 1.20640 1.16507 1.00225 1.24246 0.93265 0.94219 0.99993 1.19492 1.04538 1.03320 1.01309 1.19152 0.80880 0.96112 0.94591 1.45960 1.08471 1.43230 1.37862 1.21040 0.84989 0.80500 0.84068 1.90676 1.85442 1.34651 1.35114 1.22994 0.85830 0.92792 0.98372 0.87307 1.23268 0.97334 0.93055 1.03780 1.23135 0.94900 0.96027 1.03932 1.23468 0.86267 0.92139 1.02159 1.88513 1.15548 1.37024 1.90357 1.22191 0.90373 0.92918 0.97974 1.19350 0.88701 0.91697 0.88099 0.93906 0.88276 0.94000 0.86854 0.90595 0.76755 0.89744 0.94131 0.75344 0.86351 0.90237 0.87509 0.88447 0.90968 0.89920 0.94538 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.73 11.07 21.65 0.24 -52.49 16 2 C -0.04 -2.23 5.00 84.86 0.42 -1.81 16 3 Si 0.96 43.66 29.58 68.60 2.03 45.69 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 7 C -0.27 -13.65 9.66 84.04 0.81 -12.84 16 8 H 0.08 3.89 7.88 -2.91 -0.02 3.87 16 9 N -0.62 -28.55 3.01 -701.16 -2.11 -30.66 16 10 C 0.13 4.54 6.49 86.35 0.56 5.10 16 11 C 0.12 3.64 7.45 86.46 0.64 4.28 16 12 N -0.37 -13.11 4.03 -334.03 -1.35 -14.45 16 13 N -0.33 -10.83 12.61 -56.80 -0.72 -11.54 16 14 C 0.07 1.99 11.97 85.26 1.02 3.01 16 15 C -0.27 -9.03 5.46 -20.24 -0.11 -9.14 16 16 C 0.22 7.01 5.95 85.63 0.51 7.52 16 17 N -0.70 -20.22 5.55 -466.78 -2.59 -22.81 16 18 C 0.51 16.50 7.17 87.66 0.63 17.13 16 19 O -0.58 -24.66 16.55 15.44 0.26 -24.41 16 20 C 0.06 1.52 3.86 30.51 0.12 1.64 16 21 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 22 C -0.14 -2.11 6.56 32.05 0.21 -1.90 16 23 C -0.14 -1.71 7.02 31.86 0.22 -1.48 16 24 C 0.04 0.66 7.79 72.45 0.56 1.23 16 25 O -0.40 -11.73 10.61 -130.50 -1.38 -13.12 16 26 C 0.10 3.74 6.71 41.31 0.28 4.01 16 27 C 0.25 11.42 5.10 85.55 0.44 11.85 16 28 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.10 3.17 7.94 -2.39 -0.02 3.15 16 30 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.22 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.41 9.87 8.46 -92.71 -0.78 9.08 16 37 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.33 8.05 -2.39 -0.02 1.31 16 39 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 3.73 6.47 -2.39 -0.02 3.72 16 Total: -1.00 -73.29 363.42 0.93 -72.37 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.23 Total: 22.83 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 6.32 Total: 28.60 kcal Atomic # 7 Polarization: -125.44 SS G_CDS: -6.53 Total: -131.96 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.13 Total: -37.53 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -73.29 0.93 -72.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069851617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.072 kcal (2) G-P(sol) polarization free energy of solvation -73.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds