Wall clock time and date at job start Tue Mar 31 2020 13:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32220 * 120.51232 * 2 1 4 4 C 1.31904 * 121.14659 * 180.02562 * 3 2 1 5 5 N 1.31760 * 122.19462 * 0.25013 * 4 3 2 6 6 C 1.32743 * 120.86926 * 359.48215 * 5 4 3 7 7 O 1.35274 * 120.61478 * 180.23249 * 6 5 4 8 8 C 1.39765 * 120.51162 * 180.02562 * 2 1 3 9 9 C 1.47540 * 120.97785 * 359.95149 * 8 2 1 10 10 O 1.21594 * 119.99805 * 90.00534 * 9 8 2 11 11 N 1.34774 * 120.00229 * 269.99947 * 9 8 2 12 12 C 1.46504 * 119.99871 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.50031 * 35.06818 * 12 11 9 14 14 C 1.53041 * 109.49698 * 155.16706 * 12 11 9 15 15 C 1.53040 * 109.53931 * 58.58262 * 14 12 11 16 16 C 1.53192 * 109.31299 * 61.36787 * 15 14 12 17 17 H 1.09007 * 109.58809 * 65.14723 * 16 15 14 18 18 C 1.52998 * 109.58947 * 185.57447 * 16 15 14 19 19 N 1.46924 * 108.77504 * 305.36542 * 16 15 14 20 20 C 1.36935 * 120.63408 * 233.62801 * 19 16 15 21 21 H 1.08003 * 119.99677 * 31.89573 * 20 19 16 22 22 C 1.38807 * 120.00463 * 211.89773 * 20 19 16 23 23 N 1.31621 * 120.00020 * 10.86614 * 22 20 19 24 24 Si 1.86807 * 120.00150 * 190.87225 * 22 20 19 25 25 H 1.48496 * 109.47393 * 89.99402 * 24 22 20 26 26 H 1.48497 * 109.46732 * 209.99917 * 24 22 20 27 27 H 1.48498 * 109.46801 * 329.99455 * 24 22 20 28 28 C 1.46935 * 118.74012 * 53.60646 * 19 16 15 29 29 H 1.08995 * 109.47108 * 90.00492 * 1 2 3 30 30 H 1.09002 * 109.46994 * 210.00636 * 1 2 3 31 31 H 1.09001 * 109.46985 * 330.00034 * 1 2 3 32 32 H 1.07992 * 118.90429 * 179.97438 * 4 3 2 33 33 H 0.96703 * 114.00392 * 270.27880 * 7 6 5 34 34 H 0.96997 * 119.99991 * 0.02562 * 11 9 8 35 35 H 1.08991 * 109.46398 * 178.60673 * 14 12 11 36 36 H 1.08999 * 109.45758 * 298.56473 * 14 12 11 37 37 H 1.08997 * 109.50047 * 301.41544 * 15 14 12 38 38 H 1.09006 * 109.52467 * 181.33327 * 15 14 12 39 39 H 1.09001 * 109.47108 * 179.28275 * 18 16 15 40 40 H 1.08994 * 109.47115 * 299.29310 * 18 16 15 41 41 H 1.09004 * 109.46732 * 59.29449 * 18 16 15 42 42 H 0.96996 * 119.99792 * 180.02562 * 23 22 20 43 43 H 1.09002 * 109.58585 * 186.60501 * 28 19 16 44 44 H 1.08993 * 109.58691 * 66.17860 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1537 -0.0005 5 7 4.2115 0.0465 -0.0059 6 6 3.6234 -1.1435 -0.0008 7 8 4.3618 -2.2769 -0.0017 8 6 2.2166 -1.2041 -0.0005 9 6 1.5123 -2.5006 0.0000 10 8 1.2215 -3.0348 -1.0529 11 7 1.1915 -3.0928 1.1673 12 6 0.4917 -4.3799 1.1677 13 1 0.8358 -4.9814 0.3264 14 6 0.7812 -5.1183 2.4766 15 6 0.3285 -4.2596 3.6597 16 6 -1.1816 -4.0202 3.5634 17 1 -1.7097 -4.9669 3.6779 18 6 -1.6182 -3.0498 4.6628 19 7 -1.4859 -3.4427 2.2472 20 6 -2.1932 -2.2746 2.1444 21 1 -2.1018 -1.5188 2.9105 22 6 -3.0275 -2.0619 1.0556 23 7 -3.3071 -3.0539 0.2370 24 14 -3.7534 -0.3676 0.7520 25 1 -2.8359 0.4162 -0.1134 26 1 -5.0701 -0.5066 0.0797 27 1 -3.9312 0.3342 2.0486 28 6 -1.0165 -4.1420 1.0432 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 4.0087 2.1048 -0.0009 33 1 4.5763 -2.6060 -0.8853 34 1 1.4233 -2.6665 2.0072 35 1 0.2406 -6.0646 2.4869 36 1 1.8512 -5.3107 2.5560 37 1 0.8506 -3.3031 3.6359 38 1 0.5563 -4.7754 4.5925 39 1 -2.6906 -2.8710 4.5846 40 1 -1.3916 -3.4800 5.6382 41 1 -1.0835 -2.1068 4.5484 42 1 -3.8898 -2.9052 -0.5239 43 1 -1.2186 -3.5308 0.1635 44 1 -1.5310 -5.0985 0.9523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071762320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:57 Heat of formation + Delta-G solvation = -6.260129 kcal Electronic energy + Delta-G solvation = -29055.926153 eV Core-core repulsion = 25202.457241 eV Total energy + Delta-G solvation = -3853.468913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35639 -39.35190 -37.85262 -37.51103 -34.17840 -34.13657 -32.79881 -32.04204 -30.51385 -29.91875 -28.47520 -26.34314 -25.25236 -24.75206 -22.80688 -22.20669 -21.23528 -20.42102 -18.96051 -18.79796 -18.02489 -17.65779 -16.43909 -16.29337 -15.50831 -15.27145 -14.85828 -14.34213 -14.15832 -14.10031 -13.77473 -13.60505 -13.21076 -13.17943 -12.83832 -12.66065 -12.55963 -12.48932 -11.98893 -11.80570 -11.26114 -11.25708 -11.18886 -10.97736 -10.92479 -10.72519 -10.43658 -10.36912 -10.33939 -9.99950 -9.75265 -9.52261 -9.51232 -9.40440 -9.33439 -8.51201 -8.46083 -6.61046 -5.80238 -3.28453 0.57897 0.86739 2.84079 3.18240 3.31152 3.39807 3.41854 3.43971 3.70433 3.99490 4.23713 4.43339 4.80405 5.00340 5.17821 5.27837 5.31375 5.38914 5.43069 5.47941 5.55930 5.87005 5.97945 5.99009 6.03061 6.08504 6.12206 6.30703 6.32453 6.41649 6.48127 6.54958 6.58018 6.63615 6.79381 6.83777 7.02103 7.09035 7.18268 7.32269 7.64459 7.77977 7.93152 7.95314 8.45403 8.59057 9.19061 9.81475 10.40307 11.27134 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.006330 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.746029 B = 4422.663372 C = 5664.423965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.237 3.763 3 N -0.527 5.527 4 C 0.328 3.672 5 N -0.548 5.548 6 C 0.391 3.609 7 O -0.471 6.471 8 C -0.243 4.243 9 C 0.578 3.422 10 O -0.535 6.535 11 N -0.684 5.684 12 C 0.117 3.883 13 H 0.077 0.923 14 C -0.118 4.118 15 C -0.131 4.131 16 C 0.165 3.835 17 H 0.026 0.974 18 C -0.135 4.135 19 N -0.583 5.583 20 C -0.251 4.251 21 H 0.067 0.933 22 C 0.010 3.990 23 N -0.898 5.898 24 Si 0.886 3.114 25 H -0.279 1.279 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.162 3.838 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.203 0.797 33 H 0.412 0.588 34 H 0.396 0.604 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.050 0.950 42 H 0.254 0.746 43 H 0.098 0.902 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.884 2.050 2.265 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 N -0.243 5.243 4 C 0.040 3.960 5 N -0.273 5.273 6 C 0.203 3.797 7 O -0.279 6.279 8 C -0.252 4.252 9 C 0.360 3.640 10 O -0.412 6.412 11 N -0.333 5.333 12 C 0.011 3.989 13 H 0.095 0.905 14 C -0.156 4.156 15 C -0.170 4.170 16 C 0.059 3.941 17 H 0.043 0.957 18 C -0.192 4.192 19 N -0.306 5.306 20 C -0.381 4.381 21 H 0.084 0.916 22 C -0.189 4.189 23 N -0.541 5.541 24 Si 0.715 3.285 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.205 1.205 28 C 0.036 3.964 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.219 0.781 33 H 0.272 0.728 34 H 0.231 0.769 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 11.969 2.460 1.972 12.377 hybrid contribution -0.544 0.248 -0.307 0.671 sum 11.426 2.708 1.666 11.860 Atomic orbital electron populations 1.21175 0.85702 1.06450 1.04666 1.22068 0.98215 0.85728 0.84845 1.68336 1.09948 1.29772 1.16281 1.24908 0.86484 0.95951 0.88658 1.68005 1.42716 0.98688 1.17932 1.19364 0.85561 0.85819 0.88957 1.84609 1.72609 1.36157 1.34509 1.21939 0.94780 0.97561 1.10919 1.17370 0.78683 0.83182 0.84755 1.90809 1.54792 1.64434 1.31206 1.45837 1.57272 1.22799 1.07380 1.21892 0.96993 0.82826 0.97152 0.90505 1.21683 1.00010 0.99014 0.94927 1.22069 0.99405 0.98872 0.96667 1.20475 0.91240 0.94989 0.87443 0.95686 1.21785 1.02233 0.99208 0.96020 1.44021 1.62489 1.25417 0.98683 1.19062 1.18361 0.92957 1.07682 0.91559 1.25134 0.97128 0.96827 0.99827 1.69945 1.38117 1.29447 1.16614 0.86585 0.78926 0.84696 0.78248 1.20576 1.21854 1.20461 1.21201 0.86088 0.96934 0.92217 0.89134 0.87034 0.89489 0.78069 0.72792 0.76881 0.90984 0.92953 0.92828 0.92836 0.91997 0.94488 0.93054 0.93561 0.88436 0.95483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 9.71 36.00 0.35 -1.82 16 2 C 0.24 3.90 6.86 -81.86 -0.56 3.34 16 3 N -0.53 -7.85 10.36 -10.53 -0.11 -7.96 16 4 C 0.33 4.13 12.27 -92.09 -1.13 3.00 16 5 N -0.55 -7.61 10.45 -14.32 -0.15 -7.76 16 6 C 0.39 5.74 7.85 -16.18 -0.13 5.61 16 7 O -0.47 -6.02 13.10 -17.52 -0.23 -6.25 16 8 C -0.24 -3.99 5.67 -104.56 -0.59 -4.58 16 9 C 0.58 10.60 5.48 -12.47 -0.07 10.53 16 10 O -0.54 -11.50 16.77 5.28 0.09 -11.41 16 11 N -0.68 -11.86 4.91 -54.73 -0.27 -12.12 16 12 C 0.12 2.11 2.81 -67.81 -0.19 1.92 16 13 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 14 C -0.12 -1.80 5.59 -26.69 -0.15 -1.94 16 15 C -0.13 -2.01 5.21 -26.61 -0.14 -2.15 16 16 C 0.17 3.09 3.50 -67.60 -0.24 2.86 16 17 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 18 C -0.13 -2.35 7.97 37.16 0.30 -2.05 16 19 N -0.58 -12.88 2.90 -164.77 -0.48 -13.36 16 20 C -0.25 -6.10 8.15 -15.06 -0.12 -6.22 16 21 H 0.07 1.60 6.29 -52.48 -0.33 1.27 16 22 C 0.01 0.26 5.04 -17.43 -0.09 0.18 16 23 N -0.90 -24.72 11.10 55.49 0.62 -24.10 16 24 Si 0.89 20.31 29.57 -169.99 -5.03 15.28 16 25 H -0.28 -6.13 6.97 56.52 0.39 -5.73 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.16 3.61 4.85 -3.71 -0.02 3.60 16 29 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.11 2.26 6.80 -51.93 -0.35 1.90 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.41 3.49 9.06 45.56 0.41 3.90 16 34 H 0.40 6.49 6.76 -40.82 -0.28 6.21 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.83 6.40 -51.93 -0.33 0.49 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.19 7.65 -51.93 -0.40 0.79 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.90 7.43 -51.93 -0.39 0.51 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.10 2.54 6.15 -51.93 -0.32 2.22 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -29.99 356.91 -8.28 -38.26 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.32 Total: 11.79 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -2.78 Total: 12.26 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -0.39 Total: -65.31 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.14 Total: -17.66 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.99 -8.28 -38.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071762320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.003 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds