Wall clock time and date at job start Tue Mar 31 2020 13:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32220 * 120.51232 * 2 1 4 4 C 1.31904 * 121.14659 * 180.02562 * 3 2 1 5 5 N 1.31760 * 122.19462 * 0.25013 * 4 3 2 6 6 C 1.32743 * 120.86926 * 359.48215 * 5 4 3 7 7 O 1.35274 * 120.61478 * 180.23249 * 6 5 4 8 8 C 1.39765 * 120.51162 * 180.02562 * 2 1 3 9 9 C 1.47540 * 120.97785 * 359.95149 * 8 2 1 10 10 O 1.21594 * 119.99805 * 90.00534 * 9 8 2 11 11 N 1.34774 * 120.00229 * 269.99947 * 9 8 2 12 12 C 1.46504 * 119.99871 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.50031 * 35.06818 * 12 11 9 14 14 C 1.53041 * 109.49698 * 155.16706 * 12 11 9 15 15 C 1.53040 * 109.53931 * 58.58262 * 14 12 11 16 16 C 1.53192 * 109.31299 * 61.36787 * 15 14 12 17 17 H 1.09007 * 109.58809 * 65.14723 * 16 15 14 18 18 C 1.52998 * 109.58947 * 185.57447 * 16 15 14 19 19 N 1.46924 * 108.77504 * 305.36542 * 16 15 14 20 20 C 1.36935 * 120.63408 * 233.62801 * 19 16 15 21 21 H 1.08003 * 119.99677 * 31.89573 * 20 19 16 22 22 C 1.38807 * 120.00463 * 211.89773 * 20 19 16 23 23 N 1.31621 * 120.00020 * 10.86614 * 22 20 19 24 24 Si 1.86807 * 120.00150 * 190.87225 * 22 20 19 25 25 H 1.48496 * 109.47393 * 89.99402 * 24 22 20 26 26 H 1.48497 * 109.46732 * 209.99917 * 24 22 20 27 27 H 1.48498 * 109.46801 * 329.99455 * 24 22 20 28 28 C 1.46935 * 118.74012 * 53.60646 * 19 16 15 29 29 H 1.08995 * 109.47108 * 90.00492 * 1 2 3 30 30 H 1.09002 * 109.46994 * 210.00636 * 1 2 3 31 31 H 1.09001 * 109.46985 * 330.00034 * 1 2 3 32 32 H 1.07992 * 118.90429 * 179.97438 * 4 3 2 33 33 H 0.96703 * 114.00392 * 270.27880 * 7 6 5 34 34 H 0.96997 * 119.99991 * 0.02562 * 11 9 8 35 35 H 1.08991 * 109.46398 * 178.60673 * 14 12 11 36 36 H 1.08999 * 109.45758 * 298.56473 * 14 12 11 37 37 H 1.08997 * 109.50047 * 301.41544 * 15 14 12 38 38 H 1.09006 * 109.52467 * 181.33327 * 15 14 12 39 39 H 1.09001 * 109.47108 * 179.28275 * 18 16 15 40 40 H 1.08994 * 109.47115 * 299.29310 * 18 16 15 41 41 H 1.09004 * 109.46732 * 59.29449 * 18 16 15 42 42 H 0.96996 * 119.99792 * 180.02562 * 23 22 20 43 43 H 1.09002 * 109.58585 * 186.60501 * 28 19 16 44 44 H 1.08993 * 109.58691 * 66.17860 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1537 -0.0005 5 7 4.2115 0.0465 -0.0059 6 6 3.6234 -1.1435 -0.0008 7 8 4.3618 -2.2769 -0.0017 8 6 2.2166 -1.2041 -0.0005 9 6 1.5123 -2.5006 0.0000 10 8 1.2215 -3.0348 -1.0529 11 7 1.1915 -3.0928 1.1673 12 6 0.4917 -4.3799 1.1677 13 1 0.8358 -4.9814 0.3264 14 6 0.7812 -5.1183 2.4766 15 6 0.3285 -4.2596 3.6597 16 6 -1.1816 -4.0202 3.5634 17 1 -1.7097 -4.9669 3.6779 18 6 -1.6182 -3.0498 4.6628 19 7 -1.4859 -3.4427 2.2472 20 6 -2.1932 -2.2746 2.1444 21 1 -2.1018 -1.5188 2.9105 22 6 -3.0275 -2.0619 1.0556 23 7 -3.3071 -3.0539 0.2370 24 14 -3.7534 -0.3676 0.7520 25 1 -2.8359 0.4162 -0.1134 26 1 -5.0701 -0.5066 0.0797 27 1 -3.9312 0.3342 2.0486 28 6 -1.0165 -4.1420 1.0432 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 4.0087 2.1048 -0.0009 33 1 4.5763 -2.6060 -0.8853 34 1 1.4233 -2.6665 2.0072 35 1 0.2406 -6.0646 2.4869 36 1 1.8512 -5.3107 2.5560 37 1 0.8506 -3.3031 3.6359 38 1 0.5563 -4.7754 4.5925 39 1 -2.6906 -2.8710 4.5846 40 1 -1.3916 -3.4800 5.6382 41 1 -1.0835 -2.1068 4.5484 42 1 -3.8898 -2.9052 -0.5239 43 1 -1.2186 -3.5308 0.1635 44 1 -1.5310 -5.0985 0.9523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071762320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:57 Heat of formation + Delta-G solvation = -29.332967 kcal Electronic energy + Delta-G solvation = -29056.926667 eV Core-core repulsion = 25202.457241 eV Total energy + Delta-G solvation = -3854.469426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.53130 -40.80332 -39.13022 -38.82206 -35.78255 -35.34553 -34.47837 -33.28584 -31.93325 -31.65952 -29.79244 -27.88531 -26.85350 -26.06891 -24.01572 -23.82447 -22.60658 -21.95155 -20.37858 -20.02556 -19.19666 -19.02161 -18.17228 -17.45277 -17.06558 -16.78114 -16.10299 -15.83248 -15.76361 -15.42503 -15.25323 -15.10998 -14.68029 -14.47821 -14.34008 -14.03063 -13.96749 -13.73308 -13.63906 -13.15108 -12.91731 -12.77644 -12.58789 -12.52925 -12.42553 -12.38886 -12.10036 -12.04424 -11.56752 -11.49643 -11.23711 -11.05378 -11.00563 -10.65561 -10.53815 -10.45940 -10.00083 -8.47985 -7.75966 -5.24826 -0.54282 -0.31072 1.42548 1.46271 1.49363 1.54846 2.10479 2.15190 2.50848 2.54853 2.86293 3.11719 3.40521 3.55061 3.67388 3.77863 4.02415 4.08635 4.11656 4.19875 4.23635 4.45072 4.51165 4.60976 4.66491 4.75382 4.82837 4.92726 4.98712 5.04876 5.09525 5.12745 5.16723 5.27341 5.33858 5.57836 5.61331 5.64238 5.67962 5.77959 5.79721 6.28965 6.51347 6.52030 6.82756 7.16982 7.25573 7.97289 8.50517 9.29017 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.006330 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.746029 B = 4422.663372 C = 5664.423965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.231 3.769 3 N -0.535 5.535 4 C 0.338 3.662 5 N -0.548 5.548 6 C 0.404 3.596 7 O -0.473 6.473 8 C -0.261 4.261 9 C 0.581 3.419 10 O -0.574 6.574 11 N -0.675 5.675 12 C 0.126 3.874 13 H 0.070 0.930 14 C -0.110 4.110 15 C -0.120 4.120 16 C 0.155 3.845 17 H 0.015 0.985 18 C -0.127 4.127 19 N -0.593 5.593 20 C -0.233 4.233 21 H 0.071 0.929 22 C -0.040 4.040 23 N -0.935 5.935 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.309 1.309 27 H -0.269 1.269 28 C 0.173 3.827 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.249 0.751 33 H 0.430 0.570 34 H 0.404 0.596 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.242 0.758 43 H 0.055 0.945 44 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.832 3.135 4.253 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.086 3.914 3 N -0.251 5.251 4 C 0.052 3.948 5 N -0.274 5.274 6 C 0.215 3.785 7 O -0.284 6.284 8 C -0.271 4.271 9 C 0.365 3.635 10 O -0.454 6.454 11 N -0.324 5.324 12 C 0.020 3.980 13 H 0.088 0.912 14 C -0.148 4.148 15 C -0.159 4.159 16 C 0.049 3.951 17 H 0.033 0.967 18 C -0.185 4.185 19 N -0.317 5.317 20 C -0.363 4.363 21 H 0.089 0.911 22 C -0.236 4.236 23 N -0.581 5.581 24 Si 0.759 3.241 25 H -0.194 1.194 26 H -0.237 1.237 27 H -0.194 1.194 28 C 0.046 3.954 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.265 0.735 33 H 0.294 0.706 34 H 0.240 0.760 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 14.961 3.557 4.005 15.891 hybrid contribution -1.400 -0.105 -0.878 1.656 sum 13.561 3.452 3.127 14.338 Atomic orbital electron populations 1.20972 0.87257 1.05327 1.03771 1.21822 0.97525 0.86484 0.85565 1.68379 1.11100 1.28739 1.16927 1.25861 0.85722 0.97245 0.85962 1.68187 1.42416 0.98582 1.18175 1.19375 0.84918 0.86654 0.87555 1.84556 1.72029 1.35624 1.36178 1.21738 0.95658 0.96233 1.13436 1.17666 0.78047 0.83589 0.84239 1.90784 1.56385 1.65720 1.32553 1.45749 1.56549 1.22494 1.07581 1.21627 0.93779 0.83510 0.99071 0.91215 1.21655 1.01929 0.98541 0.92689 1.21954 0.96163 0.99560 0.98194 1.20743 0.93849 0.94624 0.85853 0.96745 1.21707 1.00451 0.99049 0.97267 1.44203 1.62366 1.25055 1.00073 1.19284 1.16694 0.93630 1.06724 0.91095 1.25675 0.98380 0.99134 1.00363 1.70121 1.39630 1.31136 1.17238 0.85858 0.77574 0.82226 0.78423 1.19352 1.23708 1.19394 1.20866 0.88983 0.94548 0.91029 0.90138 0.89930 0.88641 0.73532 0.70555 0.76004 0.90576 0.89969 0.92404 0.89464 0.94515 0.90984 0.93166 0.94829 0.92703 0.98326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 9.71 71.23 0.69 -3.46 16 2 C 0.23 7.43 6.86 42.87 0.29 7.73 16 3 N -0.54 -14.74 10.36 -187.21 -1.94 -16.68 16 4 C 0.34 7.35 12.27 180.86 2.22 9.57 16 5 N -0.55 -13.48 10.45 -312.06 -3.26 -16.75 16 6 C 0.40 10.97 7.85 85.19 0.67 11.64 16 7 O -0.47 -10.95 13.10 -85.59 -1.12 -12.08 16 8 C -0.26 -8.35 5.67 -19.82 -0.11 -8.47 16 9 C 0.58 21.44 5.48 86.70 0.47 21.92 16 10 O -0.57 -25.51 16.77 -4.01 -0.07 -25.58 16 11 N -0.67 -23.08 4.91 -445.32 -2.19 -25.27 16 12 C 0.13 4.55 2.81 45.07 0.13 4.67 16 13 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 14 C -0.11 -3.07 5.59 30.62 0.17 -2.90 16 15 C -0.12 -3.30 5.21 30.67 0.16 -3.14 16 16 C 0.15 5.59 3.50 44.97 0.16 5.75 16 17 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 18 C -0.13 -4.17 7.97 71.98 0.57 -3.60 16 19 N -0.59 -26.61 2.90 -675.21 -1.96 -28.57 16 20 C -0.23 -11.52 8.15 84.03 0.68 -10.84 16 21 H 0.07 3.42 6.29 -2.91 -0.02 3.40 16 22 C -0.04 -2.13 5.04 84.86 0.43 -1.71 16 23 N -0.93 -54.43 11.10 21.65 0.24 -54.19 16 24 Si 0.93 42.87 29.57 68.60 2.03 44.90 16 25 H -0.27 -11.66 6.97 99.48 0.69 -10.97 16 26 H -0.31 -15.07 7.11 99.48 0.71 -14.36 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 28 C 0.17 8.03 4.85 86.36 0.42 8.44 16 29 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.08 3.45 6.80 -2.39 -0.02 3.43 16 31 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.25 2.86 8.06 -2.91 -0.02 2.83 16 33 H 0.43 6.33 9.06 -74.06 -0.67 5.66 16 34 H 0.40 12.58 6.76 -92.71 -0.63 11.95 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.58 6.40 -2.39 -0.02 1.56 16 38 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.04 1.37 7.65 -2.39 -0.02 1.35 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.64 7.43 -2.39 -0.02 1.63 16 42 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.05 3.04 6.15 -2.39 -0.01 3.03 16 44 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: -1.00 -68.45 356.91 -1.57 -70.02 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.26 Total: 28.58 kcal Atomic # 6 Polarization: 28.65 SS G_CDS: 6.96 Total: 35.60 kcal Atomic # 7 Polarization: -132.35 SS G_CDS: -9.11 Total: -141.45 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.19 Total: -37.65 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -68.45 -1.57 -70.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071762320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.689 kcal (2) G-P(sol) polarization free energy of solvation -68.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds