Wall clock time and date at job start Tue Mar 31 2020 13:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32210 * 120.50754 * 2 1 4 4 C 1.31909 * 121.14024 * 180.30913 * 3 2 1 5 5 N 1.31756 * 122.19776 * 359.70375 * 4 3 2 6 6 C 1.32744 * 120.87015 * 359.97438 * 5 4 3 7 7 O 1.35279 * 120.61867 * 180.02562 * 6 5 4 8 8 C 1.39766 * 120.50828 * 179.73420 * 2 1 3 9 9 C 1.47533 * 120.97941 * 359.97438 * 8 2 1 10 10 O 1.21588 * 120.00183 * 269.71916 * 9 8 2 11 11 N 1.34777 * 119.99987 * 89.72746 * 9 8 2 12 12 C 1.46498 * 120.00356 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49462 * 324.71219 * 12 11 9 14 14 C 1.53045 * 109.49653 * 204.65656 * 12 11 9 15 15 C 1.53039 * 109.53405 * 178.67857 * 14 12 11 16 16 C 1.53196 * 109.31339 * 61.36696 * 15 14 12 17 17 H 1.08992 * 109.58664 * 65.29154 * 16 15 14 18 18 C 1.53000 * 109.58517 * 185.57636 * 16 15 14 19 19 N 1.46926 * 108.77346 * 305.36034 * 16 15 14 20 20 C 1.36938 * 120.63078 * 233.61398 * 19 16 15 21 21 H 1.08002 * 119.99893 * 29.01572 * 20 19 16 22 22 C 1.38811 * 119.99777 * 209.01927 * 20 19 16 23 23 N 1.31611 * 120.00227 * 15.01369 * 22 20 19 24 24 Si 1.86808 * 119.99893 * 195.01522 * 22 20 19 25 25 H 1.48497 * 109.47209 * 89.99796 * 24 22 20 26 26 H 1.48497 * 109.47031 * 210.00062 * 24 22 20 27 27 H 1.48498 * 109.46894 * 330.00004 * 24 22 20 28 28 C 1.46930 * 118.76596 * 53.58559 * 19 16 15 29 29 H 1.08998 * 109.46994 * 270.26438 * 1 2 3 30 30 H 1.08995 * 109.47007 * 30.26285 * 1 2 3 31 31 H 1.08999 * 109.46752 * 150.27054 * 1 2 3 32 32 H 1.08008 * 118.90617 * 179.67730 * 4 3 2 33 33 H 0.96693 * 114.00392 * 269.98048 * 7 6 5 34 34 H 0.97001 * 119.99777 * 359.71790 * 11 9 8 35 35 H 1.08999 * 109.45735 * 298.69444 * 14 12 11 36 36 H 1.09000 * 109.46063 * 58.67303 * 14 12 11 37 37 H 1.09004 * 109.49547 * 181.31082 * 15 14 12 38 38 H 1.08999 * 109.50275 * 301.41187 * 15 14 12 39 39 H 1.09005 * 109.47578 * 59.99361 * 18 16 15 40 40 H 1.08996 * 109.47167 * 179.97438 * 18 16 15 41 41 H 1.09006 * 109.47352 * 299.99718 * 18 16 15 42 42 H 0.97001 * 120.00356 * 180.02562 * 23 22 20 43 43 H 1.08993 * 109.61808 * 186.63949 * 28 19 16 44 44 H 1.08998 * 109.55703 * 66.21570 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1536 -0.0061 5 7 4.2116 0.0465 -0.0067 6 6 3.6234 -1.1435 -0.0006 7 8 4.3619 -2.2770 -0.0007 8 6 2.2166 -1.2041 0.0056 9 6 1.5124 -2.5005 0.0122 10 8 1.2271 -3.0321 1.0678 11 7 1.1854 -3.0957 -1.1520 12 6 0.4856 -4.3827 -1.1456 13 1 0.8369 -4.9836 -0.3068 14 6 0.7646 -5.1224 -2.4560 15 6 0.0608 -6.4812 -2.4365 16 6 -1.4512 -6.2669 -2.3148 17 1 -1.8226 -5.7672 -3.2094 18 6 -2.1496 -7.6188 -2.1550 19 7 -1.7171 -5.4327 -1.1349 20 6 -2.5964 -5.8479 -0.1707 21 1 -2.7429 -6.9028 0.0084 22 6 -3.2993 -4.9128 0.5766 23 7 -3.3556 -3.6597 0.1781 24 14 -4.1655 -5.4330 2.1478 25 1 -3.2367 -5.2858 3.2971 26 1 -5.3586 -4.5754 2.3626 27 1 -4.5896 -6.8515 2.0328 28 6 -1.0215 -4.1447 -1.0083 29 1 -0.3633 0.0047 1.0276 30 1 -0.3633 0.8876 -0.5179 31 1 -0.3633 -0.8924 -0.5096 32 1 4.0088 2.1049 -0.0112 33 1 4.5723 -2.6093 -0.8840 34 1 1.4094 -2.6697 -1.9942 35 1 0.3913 -4.5321 -3.2928 36 1 1.8386 -5.2716 -2.5672 37 1 0.2789 -7.0172 -3.3602 38 1 0.4155 -7.0626 -1.5855 39 1 -1.7805 -8.1147 -1.2572 40 1 -3.2250 -7.4642 -2.0681 41 1 -1.9408 -8.2408 -3.0255 42 1 -3.8465 -3.0062 0.7004 43 1 -1.2351 -3.7078 -0.0329 44 1 -1.3579 -3.4695 -1.7950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071762321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:00 Heat of formation + Delta-G solvation = -6.462162 kcal Electronic energy + Delta-G solvation = -28042.563809 eV Core-core repulsion = 24189.086136 eV Total energy + Delta-G solvation = -3853.477673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52247 -39.36684 -37.98179 -37.61068 -34.49644 -34.32766 -32.87438 -32.18497 -30.61602 -29.88114 -28.71988 -26.27783 -25.36608 -24.62550 -22.98687 -22.34006 -21.17591 -20.27258 -19.38133 -19.11476 -18.20603 -17.52617 -16.62997 -16.40680 -15.78637 -15.20179 -15.14681 -14.39733 -14.17957 -14.06604 -13.83156 -13.64408 -13.42640 -13.38281 -12.90665 -12.84484 -12.66950 -12.45966 -12.13930 -11.95560 -11.50701 -11.40769 -11.16761 -10.91703 -10.74566 -10.59386 -10.52635 -10.43974 -10.29612 -10.02835 -9.93217 -9.64391 -9.57238 -9.52673 -9.43055 -8.67231 -8.45033 -6.65604 -5.77473 -3.21721 0.41960 0.69646 2.67076 3.02816 3.29206 3.38722 3.42144 3.47913 3.49516 3.79888 4.05813 4.50436 4.65424 4.79637 4.99096 5.17797 5.27895 5.31759 5.43787 5.52136 5.58503 5.61033 5.63939 5.82014 5.91014 6.03605 6.16170 6.21766 6.24346 6.34478 6.40086 6.42750 6.57539 6.61426 6.66758 6.80751 7.00141 7.06474 7.08639 7.25069 7.67015 7.72086 7.76906 7.84267 8.40415 8.47560 9.21563 9.85429 10.40026 11.30769 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.004312 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.022246 B = 6492.190256 C = 7679.810471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.231 3.769 3 N -0.526 5.526 4 C 0.330 3.670 5 N -0.545 5.545 6 C 0.393 3.607 7 O -0.466 6.466 8 C -0.244 4.244 9 C 0.572 3.428 10 O -0.508 6.508 11 N -0.712 5.712 12 C 0.115 3.885 13 H 0.084 0.916 14 C -0.116 4.116 15 C -0.126 4.126 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.137 4.137 19 N -0.583 5.583 20 C -0.253 4.253 21 H 0.071 0.929 22 C 0.007 3.993 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.167 3.833 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.205 0.795 33 H 0.409 0.591 34 H 0.392 0.608 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.038 0.962 42 H 0.253 0.747 43 H 0.097 0.903 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.322 5.604 -7.528 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.085 3.915 3 N -0.242 5.242 4 C 0.042 3.958 5 N -0.270 5.270 6 C 0.206 3.794 7 O -0.274 6.274 8 C -0.253 4.253 9 C 0.354 3.646 10 O -0.382 6.382 11 N -0.362 5.362 12 C 0.010 3.990 13 H 0.102 0.898 14 C -0.154 4.154 15 C -0.166 4.166 16 C 0.059 3.941 17 H 0.043 0.957 18 C -0.194 4.194 19 N -0.306 5.306 20 C -0.382 4.382 21 H 0.089 0.911 22 C -0.191 4.191 23 N -0.545 5.545 24 Si 0.730 3.270 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.040 3.960 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.221 0.779 33 H 0.269 0.731 34 H 0.225 0.775 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 12.433 6.123 -6.075 15.132 hybrid contribution -0.446 -0.716 0.013 0.844 sum 11.987 5.407 -6.062 14.480 Atomic orbital electron populations 1.20984 0.86200 1.05133 1.05088 1.21960 0.98054 0.85833 0.85620 1.68316 1.10065 1.29532 1.16302 1.24942 0.86382 0.96021 0.88420 1.68026 1.42666 0.98679 1.17675 1.19369 0.85560 0.85867 0.88629 1.84707 1.72585 1.35989 1.34088 1.21907 0.94991 0.97355 1.11066 1.17466 0.78961 0.83300 0.84848 1.90891 1.52785 1.63761 1.30752 1.46107 1.59316 1.23566 1.07209 1.22107 0.96679 0.82130 0.98060 0.89781 1.21677 0.99156 0.97469 0.97077 1.22054 0.98321 0.95502 1.00748 1.20486 0.91248 0.91853 0.90544 0.95721 1.21806 1.01603 0.96232 0.99794 1.44015 1.47570 1.19132 1.19904 1.19165 1.15980 0.92217 1.10885 0.91139 1.25047 0.97895 0.96172 1.00029 1.69979 1.44303 1.02195 1.38058 0.86333 0.78825 0.77786 0.84089 1.21317 1.21784 1.20435 1.21105 0.84524 0.87719 1.02647 0.88478 0.89101 0.88916 0.77901 0.73066 0.77545 0.92240 0.93063 0.92620 0.92002 0.92756 0.91996 0.94333 0.93722 0.88538 0.96453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.85 36.01 0.35 -1.20 16 2 C 0.23 3.17 6.86 -81.86 -0.56 2.61 16 3 N -0.53 -6.59 10.36 -10.52 -0.11 -6.70 16 4 C 0.33 3.58 12.27 -92.09 -1.13 2.45 16 5 N -0.55 -6.81 10.45 -14.31 -0.15 -6.96 16 6 C 0.39 5.26 7.85 -16.18 -0.13 5.13 16 7 O -0.47 -5.63 13.10 -17.53 -0.23 -5.86 16 8 C -0.24 -3.55 5.67 -104.56 -0.59 -4.14 16 9 C 0.57 9.81 5.48 -12.47 -0.07 9.74 16 10 O -0.51 -11.37 16.77 5.29 0.09 -11.28 16 11 N -0.71 -10.66 5.08 -54.73 -0.28 -10.94 16 12 C 0.12 2.08 2.60 -67.81 -0.18 1.91 16 13 H 0.08 1.77 7.59 -51.93 -0.39 1.38 16 14 C -0.12 -1.71 5.36 -26.69 -0.14 -1.86 16 15 C -0.13 -2.03 5.37 -26.61 -0.14 -2.17 16 16 C 0.17 3.23 3.50 -67.60 -0.24 3.00 16 17 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 18 C -0.14 -2.48 7.94 37.16 0.30 -2.18 16 19 N -0.58 -13.92 2.99 -164.78 -0.49 -14.42 16 20 C -0.25 -6.73 8.61 -15.06 -0.13 -6.86 16 21 H 0.07 1.84 6.20 -52.49 -0.33 1.51 16 22 C 0.01 0.20 4.96 -17.43 -0.09 0.12 16 23 N -0.90 -25.62 11.14 55.49 0.62 -25.00 16 24 Si 0.90 21.99 29.58 -169.99 -5.03 16.96 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.17 3.81 4.86 -3.71 -0.02 3.79 16 29 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.38 7.18 -51.93 -0.37 1.01 16 32 H 0.20 1.35 8.06 -52.48 -0.42 0.92 16 33 H 0.41 2.67 9.06 45.56 0.41 3.08 16 34 H 0.39 4.53 8.59 -40.82 -0.35 4.18 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.05 1.01 7.40 -51.93 -0.38 0.62 16 40 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.10 2.61 6.06 -51.93 -0.31 2.29 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -33.96 361.34 -8.39 -42.35 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.49 Total: 6.08 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -2.76 Total: 10.33 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.41 Total: -64.02 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.14 Total: -17.14 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.96 -8.39 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071762321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.883 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds