Wall clock time and date at job start Tue Mar 31 2020 13:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32210 * 120.50754 * 2 1 4 4 C 1.31909 * 121.14024 * 180.30913 * 3 2 1 5 5 N 1.31756 * 122.19776 * 359.70375 * 4 3 2 6 6 C 1.32744 * 120.87015 * 359.97438 * 5 4 3 7 7 O 1.35279 * 120.61867 * 180.02562 * 6 5 4 8 8 C 1.39766 * 120.50828 * 179.73420 * 2 1 3 9 9 C 1.47533 * 120.97941 * 359.97438 * 8 2 1 10 10 O 1.21588 * 120.00183 * 269.71916 * 9 8 2 11 11 N 1.34777 * 119.99987 * 89.72746 * 9 8 2 12 12 C 1.46498 * 120.00356 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49462 * 324.71219 * 12 11 9 14 14 C 1.53045 * 109.49653 * 204.65656 * 12 11 9 15 15 C 1.53039 * 109.53405 * 178.67857 * 14 12 11 16 16 C 1.53196 * 109.31339 * 61.36696 * 15 14 12 17 17 H 1.08992 * 109.58664 * 65.29154 * 16 15 14 18 18 C 1.53000 * 109.58517 * 185.57636 * 16 15 14 19 19 N 1.46926 * 108.77346 * 305.36034 * 16 15 14 20 20 C 1.36938 * 120.63078 * 233.61398 * 19 16 15 21 21 H 1.08002 * 119.99893 * 29.01572 * 20 19 16 22 22 C 1.38811 * 119.99777 * 209.01927 * 20 19 16 23 23 N 1.31611 * 120.00227 * 15.01369 * 22 20 19 24 24 Si 1.86808 * 119.99893 * 195.01522 * 22 20 19 25 25 H 1.48497 * 109.47209 * 89.99796 * 24 22 20 26 26 H 1.48497 * 109.47031 * 210.00062 * 24 22 20 27 27 H 1.48498 * 109.46894 * 330.00004 * 24 22 20 28 28 C 1.46930 * 118.76596 * 53.58559 * 19 16 15 29 29 H 1.08998 * 109.46994 * 270.26438 * 1 2 3 30 30 H 1.08995 * 109.47007 * 30.26285 * 1 2 3 31 31 H 1.08999 * 109.46752 * 150.27054 * 1 2 3 32 32 H 1.08008 * 118.90617 * 179.67730 * 4 3 2 33 33 H 0.96693 * 114.00392 * 269.98048 * 7 6 5 34 34 H 0.97001 * 119.99777 * 359.71790 * 11 9 8 35 35 H 1.08999 * 109.45735 * 298.69444 * 14 12 11 36 36 H 1.09000 * 109.46063 * 58.67303 * 14 12 11 37 37 H 1.09004 * 109.49547 * 181.31082 * 15 14 12 38 38 H 1.08999 * 109.50275 * 301.41187 * 15 14 12 39 39 H 1.09005 * 109.47578 * 59.99361 * 18 16 15 40 40 H 1.08996 * 109.47167 * 179.97438 * 18 16 15 41 41 H 1.09006 * 109.47352 * 299.99718 * 18 16 15 42 42 H 0.97001 * 120.00356 * 180.02562 * 23 22 20 43 43 H 1.08993 * 109.61808 * 186.63949 * 28 19 16 44 44 H 1.08998 * 109.55703 * 66.21570 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1536 -0.0061 5 7 4.2116 0.0465 -0.0067 6 6 3.6234 -1.1435 -0.0006 7 8 4.3619 -2.2770 -0.0007 8 6 2.2166 -1.2041 0.0056 9 6 1.5124 -2.5005 0.0122 10 8 1.2271 -3.0321 1.0678 11 7 1.1854 -3.0957 -1.1520 12 6 0.4856 -4.3827 -1.1456 13 1 0.8369 -4.9836 -0.3068 14 6 0.7646 -5.1224 -2.4560 15 6 0.0608 -6.4812 -2.4365 16 6 -1.4512 -6.2669 -2.3148 17 1 -1.8226 -5.7672 -3.2094 18 6 -2.1496 -7.6188 -2.1550 19 7 -1.7171 -5.4327 -1.1349 20 6 -2.5964 -5.8479 -0.1707 21 1 -2.7429 -6.9028 0.0084 22 6 -3.2993 -4.9128 0.5766 23 7 -3.3556 -3.6597 0.1781 24 14 -4.1655 -5.4330 2.1478 25 1 -3.2367 -5.2858 3.2971 26 1 -5.3586 -4.5754 2.3626 27 1 -4.5896 -6.8515 2.0328 28 6 -1.0215 -4.1447 -1.0083 29 1 -0.3633 0.0047 1.0276 30 1 -0.3633 0.8876 -0.5179 31 1 -0.3633 -0.8924 -0.5096 32 1 4.0088 2.1049 -0.0112 33 1 4.5723 -2.6093 -0.8840 34 1 1.4094 -2.6697 -1.9942 35 1 0.3913 -4.5321 -3.2928 36 1 1.8386 -5.2716 -2.5672 37 1 0.2789 -7.0172 -3.3602 38 1 0.4155 -7.0626 -1.5855 39 1 -1.7805 -8.1147 -1.2572 40 1 -3.2250 -7.4642 -2.0681 41 1 -1.9408 -8.2408 -3.0255 42 1 -3.8465 -3.0062 0.7004 43 1 -1.2351 -3.7078 -0.0329 44 1 -1.3579 -3.4695 -1.7950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071762321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:00 Heat of formation + Delta-G solvation = -33.982126 kcal Electronic energy + Delta-G solvation = -28043.757165 eV Core-core repulsion = 24189.086136 eV Total energy + Delta-G solvation = -3854.671029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.56520 -40.76687 -39.21168 -38.90040 -36.06245 -35.36842 -34.65065 -33.31496 -32.02421 -31.67021 -29.82359 -27.80136 -26.99258 -25.90770 -24.05235 -23.95753 -22.56097 -21.73680 -20.98780 -20.06812 -19.24406 -18.81817 -18.32632 -17.61137 -17.27348 -16.83252 -16.21103 -15.85927 -15.65433 -15.42680 -15.28860 -15.15304 -14.92262 -14.48574 -14.40727 -14.11555 -13.96649 -13.77182 -13.51719 -13.17590 -13.08313 -12.74880 -12.73460 -12.57647 -12.50630 -12.25712 -12.10724 -11.96547 -11.65960 -11.51465 -11.45978 -11.14953 -10.98936 -10.70708 -10.56128 -10.52022 -10.17196 -8.60467 -7.83778 -5.28969 -0.56987 -0.32155 1.33357 1.41644 1.46576 1.51105 1.95475 2.15589 2.39591 2.51127 2.84157 3.09599 3.31926 3.47185 3.74241 3.76177 3.96394 4.05944 4.10554 4.19994 4.26323 4.39713 4.45449 4.59479 4.62161 4.72522 4.80586 4.88120 4.89686 5.01915 5.08281 5.12884 5.19316 5.28446 5.33262 5.41914 5.55767 5.62018 5.63661 5.72804 5.80960 6.32714 6.39615 6.48029 6.81132 7.10724 7.19667 7.92057 8.40327 9.21181 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.004312 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.022246 B = 6492.190256 C = 7679.810471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.231 3.769 3 N -0.531 5.531 4 C 0.340 3.660 5 N -0.550 5.550 6 C 0.403 3.597 7 O -0.477 6.477 8 C -0.264 4.264 9 C 0.579 3.421 10 O -0.570 6.570 11 N -0.692 5.692 12 C 0.130 3.870 13 H 0.052 0.948 14 C -0.107 4.107 15 C -0.119 4.119 16 C 0.154 3.846 17 H 0.024 0.976 18 C -0.130 4.130 19 N -0.603 5.603 20 C -0.251 4.251 21 H 0.073 0.927 22 C -0.048 4.048 23 N -0.929 5.929 24 Si 0.950 3.050 25 H -0.298 1.298 26 H -0.293 1.293 27 H -0.264 1.264 28 C 0.178 3.822 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.249 0.751 33 H 0.432 0.568 34 H 0.413 0.587 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.245 0.755 43 H 0.047 0.953 44 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.637 5.608 -9.603 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.085 3.915 3 N -0.247 5.247 4 C 0.054 3.946 5 N -0.275 5.275 6 C 0.215 3.785 7 O -0.288 6.288 8 C -0.273 4.273 9 C 0.363 3.637 10 O -0.448 6.448 11 N -0.343 5.343 12 C 0.024 3.976 13 H 0.071 0.929 14 C -0.145 4.145 15 C -0.158 4.158 16 C 0.049 3.951 17 H 0.041 0.959 18 C -0.188 4.188 19 N -0.327 5.327 20 C -0.382 4.382 21 H 0.091 0.909 22 C -0.244 4.244 23 N -0.575 5.575 24 Si 0.780 3.220 25 H -0.226 1.226 26 H -0.220 1.220 27 H -0.188 1.188 28 C 0.051 3.949 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.265 0.735 33 H 0.297 0.703 34 H 0.249 0.751 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 14.781 6.111 -8.237 17.991 hybrid contribution -1.104 -0.702 0.597 1.438 sum 13.677 5.409 -7.640 16.574 Atomic orbital electron populations 1.20904 0.86657 1.05087 1.04374 1.21925 0.97989 0.86135 0.85467 1.68402 1.10947 1.28507 1.16888 1.25885 0.85856 0.97157 0.85707 1.68192 1.42494 0.98601 1.18258 1.19406 0.85026 0.86600 0.87478 1.84654 1.72184 1.35734 1.36256 1.21655 0.95631 0.95945 1.14078 1.17828 0.77963 0.83733 0.84181 1.90858 1.55355 1.65635 1.32947 1.45852 1.57983 1.22608 1.07876 1.21637 0.93387 0.83226 0.99326 0.92949 1.21655 1.01492 0.96449 0.94877 1.21960 0.95105 0.96402 1.02344 1.20799 0.94237 0.91599 0.88513 0.95857 1.21742 0.99779 0.96050 1.01209 1.44305 1.47499 1.19723 1.21167 1.19466 1.15275 0.92279 1.11134 0.90946 1.25692 0.99558 0.96478 1.02659 1.70116 1.45623 1.02862 1.38907 0.85509 0.77522 0.78125 0.80847 1.22613 1.21992 1.18833 1.20800 0.87700 0.87147 0.99278 0.89633 0.86908 0.91096 0.73523 0.70340 0.75060 0.90637 0.89308 0.88571 0.93000 0.93686 0.94389 0.90329 0.94556 0.93493 0.97926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.12 9.85 71.24 0.70 -2.42 16 2 C 0.23 6.25 6.86 42.87 0.29 6.54 16 3 N -0.53 -12.33 10.36 -187.20 -1.94 -14.27 16 4 C 0.34 6.37 12.27 180.86 2.22 8.59 16 5 N -0.55 -12.36 10.45 -312.03 -3.26 -15.62 16 6 C 0.40 10.18 7.85 85.19 0.67 10.85 16 7 O -0.48 -10.72 13.10 -85.65 -1.12 -11.84 16 8 C -0.26 -7.60 5.67 -19.83 -0.11 -7.72 16 9 C 0.58 20.40 5.48 86.69 0.47 20.87 16 10 O -0.57 -26.98 16.77 -3.99 -0.07 -27.05 16 11 N -0.69 -20.67 5.08 -445.34 -2.26 -22.93 16 12 C 0.13 4.73 2.60 45.07 0.12 4.84 16 13 H 0.05 2.27 7.59 -2.39 -0.02 2.26 16 14 C -0.11 -2.85 5.36 30.62 0.16 -2.68 16 15 C -0.12 -3.45 5.37 30.67 0.16 -3.28 16 16 C 0.15 5.83 3.50 44.98 0.16 5.99 16 17 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 18 C -0.13 -4.54 7.94 71.98 0.57 -3.97 16 19 N -0.60 -29.43 2.99 -675.24 -2.02 -31.45 16 20 C -0.25 -13.76 8.61 84.03 0.72 -13.04 16 21 H 0.07 3.86 6.20 -2.91 -0.02 3.84 16 22 C -0.05 -2.77 4.96 84.86 0.42 -2.34 16 23 N -0.93 -55.60 11.14 21.65 0.24 -55.36 16 24 Si 0.95 46.90 29.58 68.60 2.03 48.93 16 25 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 26 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 27 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 28 C 0.18 8.44 4.86 86.36 0.42 8.86 16 29 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.25 7.18 -2.39 -0.02 2.24 16 32 H 0.25 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.43 4.59 9.06 -74.06 -0.67 3.92 16 34 H 0.41 8.92 8.59 -92.71 -0.80 8.12 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.63 7.40 -2.38 -0.02 1.61 16 40 H 0.04 1.47 7.66 -2.39 -0.02 1.45 16 41 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.05 2.71 6.06 -2.39 -0.01 2.69 16 44 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -79.02 361.34 -1.83 -80.86 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -0.42 Total: 17.65 kcal Atomic # 6 Polarization: 24.10 SS G_CDS: 6.98 Total: 31.08 kcal Atomic # 7 Polarization: -130.39 SS G_CDS: -9.24 Total: -139.63 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.19 Total: -38.89 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -79.02 -1.83 -80.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071762321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.876 kcal (2) G-P(sol) polarization free energy of solvation -79.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds