Wall clock time and date at job start Tue Mar 31 2020 13:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32209 * 120.50950 * 2 1 4 4 C 1.31917 * 121.14469 * 180.02562 * 3 2 1 5 5 N 1.31752 * 122.18918 * 359.97438 * 4 3 2 6 6 C 1.32748 * 120.87521 * 359.77054 * 5 4 3 7 7 O 1.35279 * 120.61808 * 180.23549 * 6 5 4 8 8 C 1.39762 * 120.50647 * 180.02562 * 2 1 3 9 9 C 1.47540 * 120.98188 * 359.95315 * 8 2 1 10 10 O 1.21592 * 119.99738 * 90.00454 * 9 8 2 11 11 N 1.34769 * 120.00015 * 270.00241 * 9 8 2 12 12 C 1.46507 * 119.99929 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.49598 * 34.92859 * 12 11 9 14 14 C 1.53037 * 109.49816 * 154.99966 * 12 11 9 15 15 C 1.53041 * 109.53612 * 181.31221 * 14 12 11 16 16 C 1.53193 * 109.31300 * 298.63310 * 15 14 12 17 17 H 1.08999 * 109.58326 * 294.84905 * 16 15 14 18 18 C 1.53006 * 109.58433 * 174.56357 * 16 15 14 19 19 N 1.46917 * 108.77325 * 54.63612 * 16 15 14 20 20 C 1.36945 * 120.63269 * 126.36835 * 19 16 15 21 21 H 1.07999 * 119.99653 * 330.19743 * 20 19 16 22 22 C 1.38810 * 120.00178 * 150.19385 * 20 19 16 23 23 N 1.31620 * 119.99942 * 344.48884 * 22 20 19 24 24 Si 1.86795 * 119.99872 * 164.48482 * 22 20 19 25 25 H 1.48497 * 109.47152 * 60.00445 * 24 22 20 26 26 H 1.48507 * 109.47028 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47373 * 300.00024 * 24 22 20 28 28 C 1.46924 * 118.74011 * 306.38942 * 19 16 15 29 29 H 1.08997 * 109.47306 * 269.97519 * 1 2 3 30 30 H 1.08996 * 109.47028 * 29.97511 * 1 2 3 31 31 H 1.09000 * 109.47301 * 149.97767 * 1 2 3 32 32 H 1.07995 * 118.90012 * 180.02562 * 4 3 2 33 33 H 0.96701 * 114.00471 * 270.24924 * 7 6 5 34 34 H 0.97002 * 120.00293 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46406 * 61.29493 * 14 12 11 36 36 H 1.09001 * 109.45933 * 301.33105 * 14 12 11 37 37 H 1.09004 * 109.49258 * 178.68277 * 15 14 12 38 38 H 1.08997 * 109.49680 * 58.58637 * 15 14 12 39 39 H 1.09000 * 109.47021 * 60.28316 * 18 16 15 40 40 H 1.08996 * 109.46860 * 180.28361 * 18 16 15 41 41 H 1.08996 * 109.46920 * 300.28384 * 18 16 15 42 42 H 0.97005 * 119.99905 * 180.02562 * 23 22 20 43 43 H 1.09006 * 109.58907 * 293.81968 * 28 19 16 44 44 H 1.09004 * 109.70724 * 173.46839 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1390 0.0000 4 6 3.4973 1.1537 -0.0005 5 7 4.2115 0.0465 -0.0005 6 6 3.6233 -1.1435 0.0045 7 8 4.3617 -2.2770 0.0092 8 6 2.2165 -1.2042 -0.0005 9 6 1.5122 -2.5006 -0.0001 10 8 1.2214 -3.0348 -1.0529 11 7 1.1913 -3.0928 1.1673 12 6 0.4925 -4.3804 1.1677 13 1 0.8356 -4.9808 0.3252 14 6 0.7853 -5.1201 2.4751 15 6 0.0822 -6.4794 2.4626 16 6 -1.4311 -6.2661 2.3562 17 1 -1.7933 -5.7644 3.2536 18 6 -2.1304 -7.6187 2.2069 19 7 -1.7094 -5.4319 1.1793 20 6 -2.5979 -5.8477 0.2237 21 1 -2.7359 -6.9024 0.0371 22 6 -3.3212 -4.9135 -0.5050 23 7 -3.3930 -3.6668 -0.0890 24 14 -4.1923 -5.4256 -2.0760 25 1 -5.1845 -6.4868 -1.7684 26 1 -4.8881 -4.2515 -2.6615 27 1 -3.1966 -5.9454 -3.0473 28 6 -1.0161 -4.1433 1.0467 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 4.0087 2.1049 -0.0001 33 1 4.5796 -2.6083 -0.8728 34 1 1.4237 -2.6668 2.0072 35 1 0.4202 -4.5301 3.3158 36 1 1.8605 -5.2683 2.5754 37 1 0.3102 -7.0153 3.3840 38 1 0.4287 -7.0603 1.6079 39 1 -1.9162 -8.2367 3.0789 40 1 -3.2064 -7.4644 2.1263 41 1 -1.7668 -8.1185 1.3091 42 1 -3.8988 -3.0140 -0.5980 43 1 -1.3446 -3.4685 1.8372 44 1 -1.2401 -3.7037 0.0747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071762322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:04 Heat of formation + Delta-G solvation = -7.930989 kcal Electronic energy + Delta-G solvation = -28025.867394 eV Core-core repulsion = 24172.326028 eV Total energy + Delta-G solvation = -3853.541366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51652 -39.35346 -37.95476 -37.59423 -34.46939 -34.32163 -32.85316 -32.17681 -30.59068 -29.87855 -28.71245 -26.25685 -25.34863 -24.61488 -22.97571 -22.32100 -21.15581 -20.23782 -19.36280 -19.09618 -18.18986 -17.53571 -16.57781 -16.41275 -15.75393 -15.32655 -15.01884 -14.40857 -14.17109 -14.06791 -13.81299 -13.63808 -13.41438 -13.36599 -12.92005 -12.83842 -12.63435 -12.43884 -12.12921 -11.92111 -11.49187 -11.40767 -11.14766 -10.92540 -10.71852 -10.56979 -10.52924 -10.43686 -10.29513 -10.04216 -9.92767 -9.62872 -9.54894 -9.50314 -9.45785 -8.64175 -8.44306 -6.63304 -5.77286 -3.21536 0.41578 0.69653 2.66090 3.04401 3.25162 3.41128 3.46734 3.49103 3.50606 3.80211 4.06167 4.50560 4.63269 4.80485 5.00220 5.18691 5.30773 5.34448 5.45833 5.54228 5.55662 5.65238 5.66314 5.82163 5.93398 6.08319 6.17101 6.24318 6.26712 6.36931 6.42230 6.45308 6.59967 6.61905 6.69876 6.83279 7.02021 7.07247 7.10328 7.26029 7.66476 7.74786 7.76893 7.84643 8.40264 8.48242 9.22049 9.85942 10.41604 11.31135 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.004303 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.538955 B = 6505.501708 C = 7684.196433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.231 3.769 3 N -0.526 5.526 4 C 0.330 3.670 5 N -0.546 5.546 6 C 0.394 3.606 7 O -0.470 6.470 8 C -0.244 4.244 9 C 0.574 3.426 10 O -0.520 6.520 11 N -0.704 5.704 12 C 0.116 3.884 13 H 0.084 0.916 14 C -0.117 4.117 15 C -0.126 4.126 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.136 4.136 19 N -0.582 5.582 20 C -0.254 4.254 21 H 0.070 0.930 22 C 0.008 3.992 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.169 3.831 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.204 0.796 33 H 0.414 0.586 34 H 0.394 0.606 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.038 0.962 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.253 0.747 43 H 0.018 0.982 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.472 5.645 3.995 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 N -0.243 5.243 4 C 0.042 3.958 5 N -0.271 5.271 6 C 0.206 3.794 7 O -0.279 6.279 8 C -0.254 4.254 9 C 0.357 3.643 10 O -0.396 6.396 11 N -0.353 5.353 12 C 0.011 3.989 13 H 0.102 0.898 14 C -0.155 4.155 15 C -0.166 4.166 16 C 0.059 3.941 17 H 0.043 0.957 18 C -0.194 4.194 19 N -0.306 5.306 20 C -0.383 4.383 21 H 0.087 0.913 22 C -0.191 4.191 23 N -0.544 5.544 24 Si 0.730 3.270 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.042 3.958 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.221 0.779 33 H 0.275 0.725 34 H 0.227 0.773 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.571 6.175 3.738 14.496 hybrid contribution -0.437 -0.709 -0.847 1.188 sum 12.133 5.467 2.891 13.618 Atomic orbital electron populations 1.20992 0.86211 1.05514 1.04808 1.21956 0.98060 0.85834 0.85599 1.68322 1.10064 1.29567 1.16302 1.24938 0.86385 0.96025 0.88406 1.68031 1.42713 0.98693 1.17646 1.19383 0.85574 0.85886 0.88515 1.84609 1.72517 1.36014 1.34736 1.21952 0.94941 0.97415 1.11052 1.17452 0.78769 0.83292 0.84829 1.90883 1.53618 1.64085 1.30974 1.46065 1.58434 1.23431 1.07367 1.22104 0.96551 0.82141 0.98124 0.89816 1.21683 0.99282 0.97425 0.97099 1.22051 0.98262 0.95510 1.00752 1.20490 0.91213 0.91849 0.90589 0.95727 1.21797 1.01596 0.96230 0.99767 1.43993 1.46990 1.19061 1.20537 1.19095 1.15183 0.92250 1.11806 0.91288 1.25061 0.97729 0.96287 1.00001 1.69989 1.43504 1.02679 1.38274 0.86416 0.79333 0.77376 0.83924 1.20912 1.21657 1.20943 1.21059 0.84577 0.87725 1.02418 0.88544 0.89100 0.88731 0.77921 0.72509 0.77338 0.92240 0.92946 0.92618 0.92032 0.94326 0.91984 0.92794 0.93681 0.96399 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.85 36.01 0.35 -1.21 16 2 C 0.23 3.16 6.86 -81.86 -0.56 2.60 16 3 N -0.53 -6.59 10.36 -10.53 -0.11 -6.70 16 4 C 0.33 3.57 12.27 -92.08 -1.13 2.44 16 5 N -0.55 -6.79 10.45 -14.32 -0.15 -6.94 16 6 C 0.39 5.24 7.85 -16.18 -0.13 5.11 16 7 O -0.47 -5.61 13.10 -17.53 -0.23 -5.84 16 8 C -0.24 -3.54 5.67 -104.56 -0.59 -4.13 16 9 C 0.57 9.80 5.48 -12.47 -0.07 9.74 16 10 O -0.52 -11.06 16.77 5.28 0.09 -10.97 16 11 N -0.70 -11.23 5.08 -54.73 -0.28 -11.51 16 12 C 0.12 2.16 2.61 -67.81 -0.18 1.98 16 13 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 14 C -0.12 -1.84 5.35 -26.69 -0.14 -1.98 16 15 C -0.13 -2.08 5.37 -26.61 -0.14 -2.23 16 16 C 0.17 3.29 3.49 -67.60 -0.24 3.05 16 17 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 18 C -0.14 -2.50 7.96 37.16 0.30 -2.20 16 19 N -0.58 -14.03 2.99 -164.77 -0.49 -14.52 16 20 C -0.25 -6.77 8.58 -15.06 -0.13 -6.89 16 21 H 0.07 1.80 6.24 -52.49 -0.33 1.47 16 22 C 0.01 0.23 4.94 -17.43 -0.09 0.14 16 23 N -0.90 -25.59 11.23 55.49 0.62 -24.97 16 24 Si 0.90 21.87 29.58 -169.99 -5.03 16.84 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 C 0.17 3.90 4.86 -3.71 -0.02 3.88 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.52 7.18 -51.93 -0.37 1.14 16 32 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.41 3.26 9.06 45.56 0.41 3.67 16 34 H 0.39 5.26 8.59 -40.82 -0.35 4.91 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 41 H 0.05 1.01 7.42 -51.93 -0.39 0.62 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 2.52 6.15 -51.93 -0.32 2.20 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -32.78 361.53 -8.38 -41.17 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.50 Total: 7.69 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -2.76 Total: 10.29 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -0.41 Total: -64.64 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.14 Total: -16.80 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.78 -8.38 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071762322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.238 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds