Wall clock time and date at job start Tue Mar 31 2020 13:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32209 * 120.50950 * 2 1 4 4 C 1.31917 * 121.14469 * 180.02562 * 3 2 1 5 5 N 1.31752 * 122.18918 * 359.97438 * 4 3 2 6 6 C 1.32748 * 120.87521 * 359.77054 * 5 4 3 7 7 O 1.35279 * 120.61808 * 180.23549 * 6 5 4 8 8 C 1.39762 * 120.50647 * 180.02562 * 2 1 3 9 9 C 1.47540 * 120.98188 * 359.95315 * 8 2 1 10 10 O 1.21592 * 119.99738 * 90.00454 * 9 8 2 11 11 N 1.34769 * 120.00015 * 270.00241 * 9 8 2 12 12 C 1.46507 * 119.99929 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.49598 * 34.92859 * 12 11 9 14 14 C 1.53037 * 109.49816 * 154.99966 * 12 11 9 15 15 C 1.53041 * 109.53612 * 181.31221 * 14 12 11 16 16 C 1.53193 * 109.31300 * 298.63310 * 15 14 12 17 17 H 1.08999 * 109.58326 * 294.84905 * 16 15 14 18 18 C 1.53006 * 109.58433 * 174.56357 * 16 15 14 19 19 N 1.46917 * 108.77325 * 54.63612 * 16 15 14 20 20 C 1.36945 * 120.63269 * 126.36835 * 19 16 15 21 21 H 1.07999 * 119.99653 * 330.19743 * 20 19 16 22 22 C 1.38810 * 120.00178 * 150.19385 * 20 19 16 23 23 N 1.31620 * 119.99942 * 344.48884 * 22 20 19 24 24 Si 1.86795 * 119.99872 * 164.48482 * 22 20 19 25 25 H 1.48497 * 109.47152 * 60.00445 * 24 22 20 26 26 H 1.48507 * 109.47028 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47373 * 300.00024 * 24 22 20 28 28 C 1.46924 * 118.74011 * 306.38942 * 19 16 15 29 29 H 1.08997 * 109.47306 * 269.97519 * 1 2 3 30 30 H 1.08996 * 109.47028 * 29.97511 * 1 2 3 31 31 H 1.09000 * 109.47301 * 149.97767 * 1 2 3 32 32 H 1.07995 * 118.90012 * 180.02562 * 4 3 2 33 33 H 0.96701 * 114.00471 * 270.24924 * 7 6 5 34 34 H 0.97002 * 120.00293 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46406 * 61.29493 * 14 12 11 36 36 H 1.09001 * 109.45933 * 301.33105 * 14 12 11 37 37 H 1.09004 * 109.49258 * 178.68277 * 15 14 12 38 38 H 1.08997 * 109.49680 * 58.58637 * 15 14 12 39 39 H 1.09000 * 109.47021 * 60.28316 * 18 16 15 40 40 H 1.08996 * 109.46860 * 180.28361 * 18 16 15 41 41 H 1.08996 * 109.46920 * 300.28384 * 18 16 15 42 42 H 0.97005 * 119.99905 * 180.02562 * 23 22 20 43 43 H 1.09006 * 109.58907 * 293.81968 * 28 19 16 44 44 H 1.09004 * 109.70724 * 173.46839 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1390 0.0000 4 6 3.4973 1.1537 -0.0005 5 7 4.2115 0.0465 -0.0005 6 6 3.6233 -1.1435 0.0045 7 8 4.3617 -2.2770 0.0092 8 6 2.2165 -1.2042 -0.0005 9 6 1.5122 -2.5006 -0.0001 10 8 1.2214 -3.0348 -1.0529 11 7 1.1913 -3.0928 1.1673 12 6 0.4925 -4.3804 1.1677 13 1 0.8356 -4.9808 0.3252 14 6 0.7853 -5.1201 2.4751 15 6 0.0822 -6.4794 2.4626 16 6 -1.4311 -6.2661 2.3562 17 1 -1.7933 -5.7644 3.2536 18 6 -2.1304 -7.6187 2.2069 19 7 -1.7094 -5.4319 1.1793 20 6 -2.5979 -5.8477 0.2237 21 1 -2.7359 -6.9024 0.0371 22 6 -3.3212 -4.9135 -0.5050 23 7 -3.3930 -3.6668 -0.0890 24 14 -4.1923 -5.4256 -2.0760 25 1 -5.1845 -6.4868 -1.7684 26 1 -4.8881 -4.2515 -2.6615 27 1 -3.1966 -5.9454 -3.0473 28 6 -1.0161 -4.1433 1.0467 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 4.0087 2.1049 -0.0001 33 1 4.5796 -2.6083 -0.8728 34 1 1.4237 -2.6668 2.0072 35 1 0.4202 -4.5301 3.3158 36 1 1.8605 -5.2683 2.5754 37 1 0.3102 -7.0153 3.3840 38 1 0.4287 -7.0603 1.6079 39 1 -1.9162 -8.2367 3.0789 40 1 -3.2064 -7.4644 2.1263 41 1 -1.7668 -8.1185 1.3091 42 1 -3.8988 -3.0140 -0.5980 43 1 -1.3446 -3.4685 1.8372 44 1 -1.2401 -3.7037 0.0747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071762322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:03 Heat of formation + Delta-G solvation = -33.983212 kcal Electronic energy + Delta-G solvation = -28026.997103 eV Core-core repulsion = 24172.326028 eV Total energy + Delta-G solvation = -3854.671076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.56011 -40.76332 -39.21603 -38.86561 -36.05097 -35.35742 -34.64727 -33.30656 -32.02842 -31.68360 -29.81841 -27.80111 -26.97672 -25.91484 -24.04551 -23.96013 -22.56541 -21.72197 -20.99595 -20.04856 -19.22099 -18.85337 -18.32546 -17.58315 -17.22122 -16.90025 -16.17515 -15.86616 -15.69411 -15.40805 -15.29735 -15.15139 -14.92767 -14.49085 -14.40773 -14.12547 -13.94295 -13.77434 -13.49706 -13.19110 -13.08127 -12.75998 -12.70760 -12.56765 -12.50177 -12.28349 -12.12786 -11.98900 -11.66680 -11.51486 -11.46729 -11.15318 -10.99924 -10.68493 -10.56616 -10.51151 -10.16753 -8.59409 -7.83656 -5.29281 -0.57713 -0.32475 1.32548 1.43012 1.47657 1.51498 1.98820 2.09935 2.46823 2.52104 2.84585 3.09208 3.31742 3.43720 3.72298 3.76132 3.94262 4.05080 4.08828 4.19836 4.25024 4.39006 4.48557 4.57727 4.60757 4.71540 4.79859 4.87640 4.88553 5.01326 5.07076 5.12652 5.18223 5.27486 5.31670 5.40352 5.55411 5.61316 5.62361 5.73006 5.78862 6.25529 6.38489 6.47446 6.80881 7.07800 7.19522 7.91500 8.41327 9.21684 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.004303 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.538955 B = 6505.501708 C = 7684.196433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.231 3.769 3 N -0.531 5.531 4 C 0.340 3.660 5 N -0.550 5.550 6 C 0.403 3.597 7 O -0.476 6.476 8 C -0.263 4.263 9 C 0.580 3.420 10 O -0.570 6.570 11 N -0.693 5.693 12 C 0.131 3.869 13 H 0.056 0.944 14 C -0.109 4.109 15 C -0.118 4.118 16 C 0.154 3.846 17 H 0.022 0.978 18 C -0.129 4.129 19 N -0.602 5.602 20 C -0.254 4.254 21 H 0.072 0.928 22 C -0.047 4.047 23 N -0.929 5.929 24 Si 0.952 3.048 25 H -0.270 1.270 26 H -0.296 1.296 27 H -0.287 1.287 28 C 0.181 3.819 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.249 0.751 33 H 0.430 0.570 34 H 0.410 0.590 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.246 0.754 43 H 0.001 0.999 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.630 5.692 5.544 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.085 3.915 3 N -0.248 5.248 4 C 0.054 3.946 5 N -0.275 5.275 6 C 0.214 3.786 7 O -0.287 6.287 8 C -0.273 4.273 9 C 0.364 3.636 10 O -0.449 6.449 11 N -0.342 5.342 12 C 0.025 3.975 13 H 0.074 0.926 14 C -0.147 4.147 15 C -0.157 4.157 16 C 0.049 3.951 17 H 0.040 0.960 18 C -0.187 4.187 19 N -0.326 5.326 20 C -0.385 4.385 21 H 0.090 0.910 22 C -0.242 4.242 23 N -0.575 5.575 24 Si 0.781 3.219 25 H -0.196 1.196 26 H -0.222 1.222 27 H -0.214 1.214 28 C 0.054 3.946 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.265 0.735 33 H 0.294 0.706 34 H 0.246 0.754 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.761 6.209 5.326 16.876 hybrid contribution -1.053 -0.699 -1.288 1.805 sum 13.708 5.510 4.037 15.315 Atomic orbital electron populations 1.20903 0.86625 1.04432 1.05077 1.21929 0.98017 0.86121 0.85426 1.68406 1.10943 1.28532 1.16880 1.25880 0.85860 0.97156 0.85710 1.68195 1.42556 0.98613 1.18186 1.19417 0.85063 0.86621 0.87452 1.84555 1.72127 1.35747 1.36251 1.21685 0.95566 0.96005 1.14001 1.17801 0.77865 0.83778 0.84107 1.90851 1.55614 1.65674 1.32719 1.45889 1.57572 1.22681 1.08065 1.21642 0.93463 0.83164 0.99221 0.92614 1.21657 1.01175 0.96688 0.95154 1.21954 0.95192 0.96176 1.02367 1.20789 0.94038 0.91719 0.88586 0.96043 1.21729 0.99785 0.95921 1.01250 1.44282 1.46940 1.19607 1.21778 1.19406 1.14616 0.92373 1.12055 0.91023 1.25722 0.99301 0.96554 1.02667 1.70129 1.44770 1.03387 1.39172 0.85568 0.78445 0.76988 0.80877 1.19591 1.22203 1.21379 1.20748 0.87555 0.87153 0.99118 0.87660 0.87624 0.92241 0.73547 0.70557 0.75438 0.90896 0.89890 0.88705 0.92821 0.90383 0.94332 0.93544 0.94490 0.98056 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.11 9.85 71.24 0.70 -2.40 16 2 C 0.23 6.23 6.86 42.87 0.29 6.52 16 3 N -0.53 -12.29 10.36 -187.21 -1.94 -14.23 16 4 C 0.34 6.36 12.27 180.86 2.22 8.58 16 5 N -0.55 -12.34 10.45 -312.04 -3.26 -15.60 16 6 C 0.40 10.13 7.85 85.18 0.67 10.80 16 7 O -0.48 -10.62 13.10 -85.64 -1.12 -11.75 16 8 C -0.26 -7.56 5.67 -19.83 -0.11 -7.67 16 9 C 0.58 20.38 5.48 86.70 0.48 20.86 16 10 O -0.57 -25.57 16.77 -4.01 -0.07 -25.64 16 11 N -0.69 -22.19 5.08 -445.33 -2.26 -24.45 16 12 C 0.13 4.92 2.61 45.07 0.12 5.04 16 13 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 14 C -0.11 -3.15 5.35 30.62 0.16 -2.99 16 15 C -0.12 -3.56 5.37 30.67 0.16 -3.40 16 16 C 0.15 5.96 3.49 44.98 0.16 6.12 16 17 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 18 C -0.13 -4.57 7.96 71.98 0.57 -3.99 16 19 N -0.60 -29.64 2.99 -675.22 -2.02 -31.66 16 20 C -0.25 -13.93 8.58 84.03 0.72 -13.21 16 21 H 0.07 3.81 6.24 -2.91 -0.02 3.79 16 22 C -0.05 -2.66 4.94 84.86 0.42 -2.24 16 23 N -0.93 -55.42 11.23 21.65 0.24 -55.18 16 24 Si 0.95 46.46 29.58 68.60 2.03 48.49 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 C 0.18 8.70 4.86 86.36 0.42 9.12 16 29 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.06 2.07 7.18 -2.39 -0.02 2.05 16 32 H 0.25 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.43 6.25 9.06 -74.06 -0.67 5.58 16 34 H 0.41 10.52 8.59 -92.71 -0.80 9.72 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.04 1.51 7.66 -2.39 -0.02 1.49 16 41 H 0.05 1.68 7.42 -2.39 -0.02 1.66 16 42 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 43 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 44 H 0.05 2.68 6.15 -2.38 -0.01 2.66 16 Total: -1.00 -74.92 361.53 -1.83 -76.75 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.42 Total: 22.12 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 6.98 Total: 31.13 kcal Atomic # 7 Polarization: -131.88 SS G_CDS: -9.23 Total: -141.11 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.19 Total: -37.38 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -74.92 -1.83 -76.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071762322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.767 kcal (2) G-P(sol) polarization free energy of solvation -74.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds