Wall clock time and date at job start Tue Mar 31 2020 12:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32165 * 120.53664 * 2 1 4 4 C 1.31853 * 120.97005 * 180.02562 * 3 2 1 5 5 N 1.31882 * 122.09492 * 359.97438 * 4 3 2 6 6 C 1.32136 * 120.96600 * 359.70606 * 5 4 3 7 7 C 1.39930 * 120.54019 * 180.02562 * 2 1 3 8 8 C 1.47829 * 120.93964 * 359.97194 * 7 2 1 9 9 O 1.21553 * 119.99806 * 354.26168 * 8 7 2 10 10 N 1.34775 * 119.99878 * 174.24762 * 8 7 2 11 11 C 1.46506 * 119.99831 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46975 * 180.02562 * 11 10 8 13 13 H 1.08996 * 108.45549 * 57.87520 * 12 11 10 14 14 C 1.47487 * 108.55272 * 175.84829 * 12 11 10 15 15 N 1.50110 * 106.48937 * 178.01140 * 14 12 11 16 16 C 1.36936 * 120.63959 * 111.37522 * 15 14 12 17 17 H 1.07997 * 120.00408 * 156.11084 * 16 15 14 18 18 C 1.38811 * 119.99599 * 336.10240 * 16 15 14 19 19 N 1.31621 * 120.00127 * 342.44202 * 18 16 15 20 20 Si 1.86800 * 119.99785 * 162.43575 * 18 16 15 21 21 H 1.48498 * 109.47118 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47133 * 300.00218 * 20 18 16 23 23 H 1.48498 * 109.46909 * 60.00286 * 20 18 16 24 24 C 1.43433 * 118.72482 * 291.09575 * 15 14 12 25 25 C 1.55332 * 116.23770 * 89.62794 * 24 15 14 26 26 C 1.55184 * 108.87549 * 319.46366 * 25 24 15 27 27 O 1.39649 * 110.56800 * 322.14531 * 26 25 24 28 28 H 1.09002 * 109.47112 * 263.36355 * 1 2 3 29 29 H 1.08991 * 109.47402 * 23.36939 * 1 2 3 30 30 H 1.09002 * 109.46540 * 143.37117 * 1 2 3 31 31 H 1.08000 * 118.95274 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.54056 * 180.31031 * 6 5 4 33 33 H 0.96997 * 120.00590 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.47147 * 60.00437 * 11 10 8 35 35 H 1.09003 * 109.46723 * 300.00454 * 11 10 8 36 36 H 1.08997 * 110.10923 * 58.78922 * 14 12 11 37 37 H 1.09006 * 110.14726 * 297.24451 * 14 12 11 38 38 H 0.97005 * 119.99702 * 179.97438 * 19 18 16 39 39 H 1.08998 * 108.12650 * 211.39119 * 24 15 14 40 40 H 1.08994 * 108.12412 * 328.08516 * 24 15 14 41 41 H 1.09003 * 109.56359 * 79.27933 * 25 24 15 42 42 H 1.09000 * 109.57013 * 199.64377 * 25 24 15 43 43 H 1.09003 * 109.25745 * 82.42449 * 26 25 24 44 44 H 1.08998 * 109.25549 * 201.90067 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 -0.0005 5 7 4.2061 0.0364 -0.0005 6 6 3.6165 -1.1461 0.0058 7 6 2.2180 -1.2052 -0.0005 8 6 1.5122 -2.5041 -0.0005 9 8 0.3018 -2.5380 0.1053 10 7 2.2108 -3.6506 -0.1180 11 6 1.5112 -4.9379 -0.1185 12 6 2.5288 -6.0712 -0.2630 13 1 3.2428 -6.0005 0.5575 14 6 1.8156 -7.3581 -0.1606 15 7 2.8451 -8.4327 -0.3572 16 6 3.2077 -9.2500 0.6799 17 1 3.6252 -10.2254 0.4783 18 6 3.0388 -8.8246 1.9904 19 7 2.8661 -7.5459 2.2502 20 14 3.0566 -10.0671 3.3852 21 1 2.8563 -9.3634 4.6775 22 1 1.9641 -11.0526 3.1842 23 1 4.3630 -10.7729 3.4027 24 6 3.4374 -8.5909 -1.6540 25 6 4.7212 -7.7606 -1.9285 26 6 4.5420 -6.3437 -1.3214 27 8 3.2289 -5.8998 -1.4908 28 1 -0.3633 -0.1188 1.0208 29 1 -0.3634 0.9433 -0.4076 30 1 -0.3632 -0.8248 -0.6132 31 1 4.0126 2.0973 -0.0001 32 1 4.2039 -2.0523 0.0107 33 1 3.1767 -3.6236 -0.2022 34 1 0.8102 -4.9701 -0.9525 35 1 0.9669 -5.0559 0.8185 36 1 1.0526 -7.4265 -0.9360 37 1 1.3578 -7.4563 0.8238 38 1 2.7477 -7.2488 3.1660 39 1 3.6796 -9.6449 -1.7898 40 1 2.6936 -8.3171 -2.4021 41 1 5.5783 -8.2502 -1.4662 42 1 4.8807 -7.6797 -3.0037 43 1 4.7761 -6.3762 -0.2573 44 1 5.2219 -5.6513 -1.8180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073541279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:58 Heat of formation + Delta-G solvation = 2.994981 kcal Electronic energy + Delta-G solvation = -27650.443786 eV Core-core repulsion = 23797.376206 eV Total energy + Delta-G solvation = -3853.067581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.44779 -39.53399 -38.70269 -35.24238 -34.95900 -34.25577 -32.97742 -32.13756 -31.17389 -29.12744 -28.36556 -26.02071 -25.38747 -24.82922 -23.16287 -22.54187 -20.96125 -20.60491 -19.65959 -18.00097 -17.84638 -17.10229 -16.88626 -16.13407 -15.59366 -15.49774 -14.93598 -14.76979 -14.49469 -14.26449 -14.09811 -13.88798 -13.42548 -13.26421 -13.08665 -13.04308 -12.62417 -12.39936 -12.30775 -12.00135 -11.77992 -11.44400 -11.28990 -10.89658 -10.80120 -10.77605 -10.54432 -10.22959 -10.01699 -9.83658 -9.76552 -9.69210 -9.57708 -9.52776 -8.89109 -8.81333 -8.55974 -6.87616 -5.96672 -3.36076 0.26022 0.78555 2.82720 3.18790 3.30754 3.37388 3.39266 3.60531 3.78959 3.83766 4.14809 4.39168 4.55943 4.60528 4.79360 5.03712 5.18328 5.23694 5.30915 5.55450 5.63328 5.65733 5.75651 5.85154 5.89495 5.91228 6.05946 6.18603 6.25271 6.33075 6.39100 6.45349 6.60697 6.63109 6.66437 6.74688 6.82166 6.89908 7.04608 7.29514 7.56989 7.66155 7.76822 8.05155 8.22407 8.27344 9.02455 9.70190 10.23682 11.12275 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016807 B = 0.003361 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.600881 B = 8329.293492 C = 8822.192637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.233 3.767 3 N -0.528 5.528 4 C 0.313 3.687 5 N -0.528 5.528 6 C 0.187 3.813 7 C -0.240 4.240 8 C 0.563 3.437 9 O -0.532 6.532 10 N -0.704 5.704 11 C 0.121 3.879 12 C 0.061 3.939 13 H 0.106 0.894 14 C 0.142 3.858 15 N -0.588 5.588 16 C -0.248 4.248 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.910 5.910 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.161 3.839 25 C -0.172 4.172 26 C 0.066 3.934 27 O -0.370 6.370 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.200 0.800 32 H 0.172 0.828 33 H 0.399 0.601 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.019 0.981 37 H 0.109 0.891 38 H 0.256 0.744 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.681 12.690 -4.944 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.086 3.914 3 N -0.242 5.242 4 C 0.026 3.974 5 N -0.242 5.242 6 C 0.020 3.980 7 C -0.247 4.247 8 C 0.348 3.652 9 O -0.411 6.411 10 N -0.354 5.354 11 C -0.003 4.003 12 C 0.003 3.997 13 H 0.123 0.877 14 C 0.018 3.982 15 N -0.309 5.309 16 C -0.377 4.377 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.556 5.556 20 Si 0.736 3.264 21 H -0.216 1.216 22 H -0.211 1.211 23 H -0.210 1.210 24 C 0.032 3.968 25 C -0.213 4.213 26 C -0.011 4.011 27 O -0.289 6.289 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.217 0.783 32 H 0.189 0.811 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.162 13.620 -4.872 14.466 hybrid contribution 0.602 -1.441 0.951 1.828 sum 0.764 12.179 -3.922 12.817 Atomic orbital electron populations 1.21095 0.86519 1.04367 1.04860 1.22017 0.98225 0.86484 0.84634 1.68415 1.10268 1.29793 1.15748 1.25200 0.86828 0.97267 0.88079 1.68454 1.41513 0.98941 1.15284 1.23526 0.90981 0.96719 0.86799 1.21724 0.96248 0.96565 1.10195 1.17706 0.86972 0.83106 0.77436 1.90730 1.13234 1.86969 1.50180 1.45858 1.10904 1.06025 1.72622 1.21802 0.95533 0.80590 1.02335 1.22330 0.96241 0.94423 0.86752 0.87692 1.20906 0.90108 0.85763 1.01473 1.44090 1.41838 1.37876 1.07052 1.19248 1.37795 0.95629 0.85061 0.91299 1.24886 1.01511 0.95710 0.97455 1.69837 1.54098 1.12532 1.19146 0.86308 0.78072 0.80690 0.81343 1.21616 1.21074 1.21033 1.20372 0.92252 0.96284 0.87933 1.23579 1.01478 0.97423 0.98838 1.22358 0.83905 0.94188 1.00688 1.87519 1.23292 1.83116 1.34968 0.89079 0.90735 0.87380 0.78329 0.81095 0.76663 0.91561 0.89895 0.96264 0.87361 0.93405 0.94866 0.94997 0.92463 0.93135 0.91918 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 8.98 36.01 0.32 -0.94 16 2 C 0.23 2.94 6.87 -81.82 -0.56 2.38 16 3 N -0.53 -6.30 10.36 -10.48 -0.11 -6.41 16 4 C 0.31 3.27 12.27 -92.03 -1.13 2.14 16 5 N -0.53 -6.11 10.42 -14.24 -0.15 -6.26 16 6 C 0.19 2.15 10.80 -16.77 -0.18 1.97 16 7 C -0.24 -3.09 5.91 -104.69 -0.62 -3.71 16 8 C 0.56 8.35 7.73 -12.34 -0.10 8.25 16 9 O -0.53 -9.04 13.53 5.32 0.07 -8.97 16 10 N -0.70 -10.33 5.39 -61.25 -0.33 -10.66 16 11 C 0.12 2.06 5.24 -4.04 -0.02 2.04 16 12 C 0.06 1.17 1.94 -29.39 -0.06 1.11 16 13 H 0.11 2.26 5.33 -51.93 -0.28 1.98 16 14 C 0.14 3.08 4.74 -4.68 -0.02 3.06 16 15 N -0.59 -13.63 2.61 -174.20 -0.45 -14.08 16 16 C -0.25 -6.28 9.64 -15.06 -0.15 -6.43 16 17 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 18 C 0.00 0.05 4.97 -17.43 -0.09 -0.04 16 19 N -0.91 -22.96 9.47 55.49 0.53 -22.43 16 20 Si 0.91 20.44 29.59 -169.99 -5.03 15.41 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.16 3.27 5.33 -4.43 -0.02 3.25 16 25 C -0.17 -3.08 6.75 -24.34 -0.16 -3.24 16 26 C 0.07 1.17 6.38 38.31 0.24 1.42 16 27 O -0.37 -6.81 9.53 -31.96 -0.30 -7.12 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.11 1.36 5.97 -51.93 -0.31 1.05 16 31 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.17 1.60 6.58 -52.49 -0.35 1.26 16 33 H 0.40 5.19 6.50 -40.82 -0.27 4.92 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 2.58 5.92 -51.93 -0.31 2.28 16 38 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 39 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 40 H 0.03 0.64 7.97 -51.93 -0.41 0.22 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.24 6.66 -51.93 -0.35 0.89 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -28.10 352.03 -9.04 -37.14 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.03 Total: 6.82 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -2.54 Total: 11.25 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.52 Total: -59.84 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.23 Total: -16.09 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.10 -9.04 -37.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073541279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.134 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds