Wall clock time and date at job start Tue Mar 31 2020 12:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32165 * 120.53664 * 2 1 4 4 C 1.31853 * 120.97005 * 180.02562 * 3 2 1 5 5 N 1.31882 * 122.09492 * 359.97438 * 4 3 2 6 6 C 1.32136 * 120.96600 * 359.70606 * 5 4 3 7 7 C 1.39930 * 120.54019 * 180.02562 * 2 1 3 8 8 C 1.47829 * 120.93964 * 359.97194 * 7 2 1 9 9 O 1.21553 * 119.99806 * 354.26168 * 8 7 2 10 10 N 1.34775 * 119.99878 * 174.24762 * 8 7 2 11 11 C 1.46506 * 119.99831 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46975 * 180.02562 * 11 10 8 13 13 H 1.08996 * 108.45549 * 57.87520 * 12 11 10 14 14 C 1.47487 * 108.55272 * 175.84829 * 12 11 10 15 15 N 1.50110 * 106.48937 * 178.01140 * 14 12 11 16 16 C 1.36936 * 120.63959 * 111.37522 * 15 14 12 17 17 H 1.07997 * 120.00408 * 156.11084 * 16 15 14 18 18 C 1.38811 * 119.99599 * 336.10240 * 16 15 14 19 19 N 1.31621 * 120.00127 * 342.44202 * 18 16 15 20 20 Si 1.86800 * 119.99785 * 162.43575 * 18 16 15 21 21 H 1.48498 * 109.47118 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47133 * 300.00218 * 20 18 16 23 23 H 1.48498 * 109.46909 * 60.00286 * 20 18 16 24 24 C 1.43433 * 118.72482 * 291.09575 * 15 14 12 25 25 C 1.55332 * 116.23770 * 89.62794 * 24 15 14 26 26 C 1.55184 * 108.87549 * 319.46366 * 25 24 15 27 27 O 1.39649 * 110.56800 * 322.14531 * 26 25 24 28 28 H 1.09002 * 109.47112 * 263.36355 * 1 2 3 29 29 H 1.08991 * 109.47402 * 23.36939 * 1 2 3 30 30 H 1.09002 * 109.46540 * 143.37117 * 1 2 3 31 31 H 1.08000 * 118.95274 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.54056 * 180.31031 * 6 5 4 33 33 H 0.96997 * 120.00590 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.47147 * 60.00437 * 11 10 8 35 35 H 1.09003 * 109.46723 * 300.00454 * 11 10 8 36 36 H 1.08997 * 110.10923 * 58.78922 * 14 12 11 37 37 H 1.09006 * 110.14726 * 297.24451 * 14 12 11 38 38 H 0.97005 * 119.99702 * 179.97438 * 19 18 16 39 39 H 1.08998 * 108.12650 * 211.39119 * 24 15 14 40 40 H 1.08994 * 108.12412 * 328.08516 * 24 15 14 41 41 H 1.09003 * 109.56359 * 79.27933 * 25 24 15 42 42 H 1.09000 * 109.57013 * 199.64377 * 25 24 15 43 43 H 1.09003 * 109.25745 * 82.42449 * 26 25 24 44 44 H 1.08998 * 109.25549 * 201.90067 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 -0.0005 5 7 4.2061 0.0364 -0.0005 6 6 3.6165 -1.1461 0.0058 7 6 2.2180 -1.2052 -0.0005 8 6 1.5122 -2.5041 -0.0005 9 8 0.3018 -2.5380 0.1053 10 7 2.2108 -3.6506 -0.1180 11 6 1.5112 -4.9379 -0.1185 12 6 2.5288 -6.0712 -0.2630 13 1 3.2428 -6.0005 0.5575 14 6 1.8156 -7.3581 -0.1606 15 7 2.8451 -8.4327 -0.3572 16 6 3.2077 -9.2500 0.6799 17 1 3.6252 -10.2254 0.4783 18 6 3.0388 -8.8246 1.9904 19 7 2.8661 -7.5459 2.2502 20 14 3.0566 -10.0671 3.3852 21 1 2.8563 -9.3634 4.6775 22 1 1.9641 -11.0526 3.1842 23 1 4.3630 -10.7729 3.4027 24 6 3.4374 -8.5909 -1.6540 25 6 4.7212 -7.7606 -1.9285 26 6 4.5420 -6.3437 -1.3214 27 8 3.2289 -5.8998 -1.4908 28 1 -0.3633 -0.1188 1.0208 29 1 -0.3634 0.9433 -0.4076 30 1 -0.3632 -0.8248 -0.6132 31 1 4.0126 2.0973 -0.0001 32 1 4.2039 -2.0523 0.0107 33 1 3.1767 -3.6236 -0.2022 34 1 0.8102 -4.9701 -0.9525 35 1 0.9669 -5.0559 0.8185 36 1 1.0526 -7.4265 -0.9360 37 1 1.3578 -7.4563 0.8238 38 1 2.7477 -7.2488 3.1660 39 1 3.6796 -9.6449 -1.7898 40 1 2.6936 -8.3171 -2.4021 41 1 5.5783 -8.2502 -1.4662 42 1 4.8807 -7.6797 -3.0037 43 1 4.7761 -6.3762 -0.2573 44 1 5.2219 -5.6513 -1.8180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073541279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:57 Heat of formation + Delta-G solvation = -14.148273 kcal Electronic energy + Delta-G solvation = -27651.187174 eV Core-core repulsion = 23797.376206 eV Total energy + Delta-G solvation = -3853.810968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.38688 -40.89428 -40.04088 -36.81452 -36.27944 -35.31026 -34.10369 -33.63543 -32.79275 -30.45791 -29.57723 -27.34967 -27.04897 -26.02203 -24.37045 -23.82370 -22.40807 -21.88353 -21.28989 -19.11405 -18.99287 -18.62751 -17.83157 -17.65923 -16.86327 -16.72751 -16.50695 -16.24335 -15.89489 -15.57507 -15.51515 -15.00302 -14.80424 -14.62495 -14.19958 -14.16186 -14.00211 -13.81263 -13.55688 -13.27504 -13.23576 -12.94587 -12.73627 -12.59679 -12.49065 -12.30354 -11.92052 -11.75761 -11.68680 -11.37521 -11.18735 -10.87697 -10.79318 -10.55092 -10.43007 -10.26069 -10.08355 -8.70206 -7.87884 -5.28807 -0.66141 -0.12561 1.49218 1.53083 1.57497 1.73327 2.00802 2.53225 2.67057 2.94122 3.02555 3.13151 3.25805 3.29573 3.51091 3.59014 3.77299 4.14888 4.26604 4.29361 4.38765 4.42129 4.44091 4.57527 4.67412 4.76217 4.78344 4.79668 4.80602 4.93264 5.05017 5.09761 5.19862 5.20154 5.29083 5.35575 5.39722 5.43850 5.53896 5.68624 5.76658 6.36947 6.41904 6.53081 6.89134 7.06040 7.13074 7.84871 8.36784 9.17619 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016807 B = 0.003361 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.600881 B = 8329.293492 C = 8822.192637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.226 3.774 3 N -0.537 5.537 4 C 0.318 3.682 5 N -0.537 5.537 6 C 0.193 3.807 7 C -0.255 4.255 8 C 0.565 3.435 9 O -0.558 6.558 10 N -0.699 5.699 11 C 0.134 3.866 12 C 0.080 3.920 13 H 0.084 0.916 14 C 0.143 3.857 15 N -0.603 5.603 16 C -0.263 4.263 17 H 0.062 0.938 18 C -0.035 4.035 19 N -0.917 5.917 20 Si 0.958 3.042 21 H -0.294 1.294 22 H -0.286 1.286 23 H -0.282 1.282 24 C 0.154 3.846 25 C -0.165 4.165 26 C 0.067 3.933 27 O -0.367 6.367 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.237 0.763 32 H 0.190 0.810 33 H 0.408 0.592 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.083 0.917 38 H 0.251 0.749 39 H 0.029 0.971 40 H 0.035 0.965 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.038 0.962 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 14.019 -5.684 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.080 3.920 3 N -0.252 5.252 4 C 0.032 3.968 5 N -0.251 5.251 6 C 0.026 3.974 7 C -0.262 4.262 8 C 0.352 3.648 9 O -0.438 6.438 10 N -0.350 5.350 11 C 0.010 3.990 12 C 0.021 3.979 13 H 0.102 0.898 14 C 0.019 3.981 15 N -0.324 5.324 16 C -0.393 4.393 17 H 0.080 0.920 18 C -0.231 4.231 19 N -0.563 5.563 20 Si 0.787 3.213 21 H -0.220 1.220 22 H -0.213 1.213 23 H -0.208 1.208 24 C 0.026 3.974 25 C -0.206 4.206 26 C -0.011 4.011 27 O -0.286 6.286 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.253 0.747 32 H 0.207 0.793 33 H 0.244 0.756 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.363 14.960 -5.637 16.045 hybrid contribution 0.256 -1.838 1.134 2.174 sum 1.618 13.123 -4.503 13.968 Atomic orbital electron populations 1.21035 0.86112 1.04605 1.04625 1.22221 0.98794 0.86746 0.84283 1.68505 1.11004 1.29242 1.16406 1.25995 0.86507 0.98382 0.85921 1.68568 1.41570 0.99156 1.15849 1.23820 0.90496 0.97609 0.85469 1.21533 0.96845 0.95445 1.12399 1.17955 0.86700 0.83621 0.76539 1.90721 1.14422 1.87393 1.51300 1.45696 1.11299 1.05225 1.72752 1.21454 0.94871 0.81160 1.01531 1.21874 0.95753 0.93886 0.86394 0.89849 1.20835 0.90273 0.86868 1.00169 1.44215 1.42531 1.38185 1.07473 1.19380 1.38030 0.95875 0.86013 0.92011 1.25419 1.01766 0.96986 0.98906 1.69963 1.54257 1.13202 1.18879 0.85496 0.77778 0.78939 0.79041 1.22026 1.21302 1.20808 1.20484 0.93502 0.96722 0.86692 1.23497 0.99645 0.96949 1.00538 1.22415 0.84009 0.94981 0.99657 1.87520 1.23733 1.82995 1.34331 0.89106 0.89127 0.88809 0.74677 0.79317 0.75578 0.91668 0.91322 0.95772 0.89865 0.93961 0.95243 0.94690 0.92809 0.90420 0.94352 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 8.98 71.24 0.64 -1.72 16 2 C 0.23 5.44 6.87 42.92 0.29 5.74 16 3 N -0.54 -11.76 10.36 -187.06 -1.94 -13.69 16 4 C 0.32 5.79 12.27 180.84 2.22 8.01 16 5 N -0.54 -11.14 10.42 -198.97 -2.07 -13.22 16 6 C 0.19 4.09 10.80 85.07 0.92 5.01 16 7 C -0.25 -6.30 5.91 -19.91 -0.12 -6.41 16 8 C 0.57 16.56 7.73 86.78 0.67 17.23 16 9 O -0.56 -19.09 13.53 -3.88 -0.05 -19.14 16 10 N -0.70 -20.12 5.39 -465.98 -2.51 -22.63 16 11 C 0.13 4.59 5.24 86.38 0.45 5.04 16 12 C 0.08 3.04 1.94 28.87 0.06 3.10 16 13 H 0.08 3.62 5.33 -2.39 -0.01 3.61 16 14 C 0.14 6.28 4.74 83.95 0.40 6.68 16 15 N -0.60 -28.07 2.61 -705.06 -1.84 -29.90 16 16 C -0.26 -13.46 9.64 84.03 0.81 -12.65 16 17 H 0.06 3.18 7.86 -2.91 -0.02 3.15 16 18 C -0.03 -1.75 4.97 84.86 0.42 -1.33 16 19 N -0.92 -46.93 9.47 21.65 0.21 -46.72 16 20 Si 0.96 42.31 29.59 68.60 2.03 44.34 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 24 C 0.15 6.16 5.33 87.75 0.47 6.63 16 25 C -0.17 -5.60 6.75 32.14 0.22 -5.38 16 26 C 0.07 2.23 6.38 72.73 0.46 2.70 16 27 O -0.37 -12.96 9.53 -137.28 -1.31 -14.27 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 2.37 5.97 -2.39 -0.01 2.35 16 31 H 0.24 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.19 3.14 6.58 -2.91 -0.02 3.12 16 33 H 0.41 10.13 6.50 -92.71 -0.60 9.52 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.53 16 36 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 4.09 5.92 -2.38 -0.01 4.07 16 38 H 0.25 12.76 8.31 -92.70 -0.77 11.99 16 39 H 0.03 1.18 7.96 -2.39 -0.02 1.16 16 40 H 0.03 1.36 7.97 -2.39 -0.02 1.34 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.04 1.48 6.66 -2.39 -0.02 1.47 16 44 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -59.68 352.03 0.86 -58.83 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.43 Total: 23.78 kcal Atomic # 6 Polarization: 24.73 SS G_CDS: 7.91 Total: 32.64 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -8.16 Total: -126.17 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.36 Total: -33.41 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -59.68 0.86 -58.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073541279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.679 kcal (2) G-P(sol) polarization free energy of solvation -59.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds