Wall clock time and date at job start Tue Mar 31 2020 13:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38806 * 120.42394 * 2 1 4 4 C 1.39497 * 118.25858 * 180.02562 * 3 2 1 5 5 C 1.48455 * 120.54774 * 179.97438 * 4 3 2 6 6 O 1.21480 * 119.99891 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00264 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00527 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47565 * 179.97438 * 8 7 5 10 10 H 1.09000 * 108.56983 * 62.05194 * 9 8 7 11 11 C 1.46924 * 108.62023 * 180.02562 * 9 8 7 12 12 N 1.50112 * 106.77412 * 177.92239 * 11 9 8 13 13 C 1.36938 * 120.63810 * 111.37104 * 12 11 9 14 14 H 1.08003 * 120.00167 * 155.67298 * 13 12 11 15 15 C 1.38807 * 119.99836 * 335.67328 * 13 12 11 16 16 N 1.31616 * 120.00114 * 340.63038 * 15 13 12 17 17 Si 1.86798 * 120.00003 * 160.62345 * 15 13 12 18 18 H 1.48507 * 109.47441 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46997 * 120.00082 * 17 15 13 20 20 H 1.48500 * 109.47522 * 240.00383 * 17 15 13 21 21 C 1.43432 * 118.72958 * 291.34535 * 12 11 9 22 22 C 1.55327 * 116.23739 * 89.35504 * 21 12 11 23 23 C 1.55191 * 108.87588 * 319.46754 * 22 21 12 24 24 O 1.39647 * 110.56485 * 322.14207 * 23 22 21 25 25 N 1.33100 * 118.90201 * 359.97438 * 4 3 2 26 26 C 1.31549 * 120.73971 * 0.02562 * 25 4 3 27 27 N 1.31910 * 121.91845 * 0.02562 * 26 25 4 28 28 H 1.09000 * 109.47125 * 90.00109 * 1 2 3 29 29 H 1.08996 * 109.47119 * 209.99929 * 1 2 3 30 30 H 1.09004 * 109.47363 * 329.99890 * 1 2 3 31 31 H 1.07998 * 120.87080 * 0.02562 * 3 2 1 32 32 H 0.97003 * 120.00043 * 359.97438 * 7 5 4 33 33 H 1.09003 * 109.46846 * 299.99983 * 8 7 5 34 34 H 1.09005 * 109.47312 * 59.99340 * 8 7 5 35 35 H 1.09002 * 109.98719 * 297.23431 * 11 9 8 36 36 H 1.09004 * 109.99002 * 58.60423 * 11 9 8 37 37 H 0.97005 * 119.99982 * 180.02562 * 16 15 13 38 38 H 1.08991 * 108.12531 * 211.11492 * 21 12 11 39 39 H 1.08990 * 108.12440 * 327.81522 * 21 12 11 40 40 H 1.09006 * 109.57193 * 79.28100 * 22 21 12 41 41 H 1.09000 * 109.57187 * 199.64675 * 22 21 12 42 42 H 1.08992 * 109.26229 * 82.42396 * 23 22 21 43 43 H 1.08998 * 109.25543 * 201.90409 * 23 22 21 44 44 H 1.08003 * 119.04339 * 179.72037 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1442 -0.0005 5 6 4.4062 2.3933 -0.0011 6 8 3.8493 3.4729 -0.0007 7 7 5.7524 2.3296 -0.0022 8 6 6.5442 3.5621 -0.0022 9 6 8.0335 3.2117 -0.0029 10 1 8.2601 2.6610 -0.9158 11 6 8.8090 4.4596 -0.0023 12 7 10.2576 4.0694 0.0492 13 6 11.0763 4.2822 -1.0277 14 1 12.1425 4.3792 -0.8847 15 6 10.5360 4.3733 -2.3030 16 7 9.3356 3.8909 -2.5452 17 14 11.5125 5.1808 -3.6755 18 1 12.8234 5.6376 -3.1480 19 1 11.7338 4.2002 -4.7686 20 1 10.7569 6.3460 -4.2014 21 6 10.7680 3.4698 1.2481 22 6 10.6756 1.9217 1.3347 23 6 9.3088 1.4671 0.7571 24 8 8.3024 2.3678 1.1119 25 7 4.2027 -0.0445 -0.0005 26 6 3.4954 -1.1537 -0.0005 27 7 2.1764 -1.1397 -0.0010 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6912 2.1442 0.0004 32 1 6.1972 1.4675 -0.0022 33 1 6.3075 4.1459 -0.8918 34 1 6.3088 4.1452 0.8882 35 1 8.6073 5.0241 -0.9126 36 1 8.5527 5.0572 0.8726 37 1 8.9582 3.9542 -3.4365 38 1 11.8154 3.7533 1.3496 39 1 10.2225 3.8869 2.0945 40 1 11.4836 1.4747 0.7553 41 1 10.7542 1.6089 2.3759 42 1 9.3773 1.4143 -0.3294 43 1 9.0626 0.4807 1.1501 44 1 4.0097 -2.1034 -0.0051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073575963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:04 Heat of formation + Delta-G solvation = -0.098205 kcal Electronic energy + Delta-G solvation = -27323.718012 eV Core-core repulsion = 23470.516300 eV Total energy + Delta-G solvation = -3853.201711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.39584 -39.50863 -38.65748 -35.08174 -34.86537 -34.47191 -32.83652 -32.13878 -31.15612 -28.96434 -28.67686 -26.22831 -25.33311 -24.47840 -23.77832 -22.44704 -20.82680 -20.40253 -19.60709 -18.30093 -17.55806 -16.97406 -16.07531 -15.75399 -15.68246 -15.57712 -15.37378 -14.87346 -14.68651 -14.37618 -14.14829 -13.86843 -13.50719 -13.32931 -13.15751 -13.02054 -12.71975 -12.59309 -12.30505 -11.96982 -11.43299 -11.24460 -11.17060 -10.87544 -10.77571 -10.73493 -10.48042 -10.38903 -10.13073 -9.97014 -9.84083 -9.68749 -9.55944 -9.45874 -8.82717 -8.76014 -8.52183 -6.83660 -5.93691 -3.32136 0.34596 0.67111 2.76568 3.09291 3.31831 3.41214 3.42822 3.66572 3.71835 3.80954 4.33678 4.42746 4.65744 4.68807 4.75940 5.06911 5.16320 5.21858 5.27119 5.28151 5.44615 5.55770 5.69946 5.82450 5.91449 5.94315 6.06117 6.12395 6.31768 6.38912 6.43737 6.48505 6.61805 6.67019 6.70102 6.79976 6.87184 6.94709 7.10303 7.30207 7.61395 7.71366 7.81359 8.11674 8.26348 8.30885 9.05608 9.73809 10.27991 11.15534 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.003117 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.551728 B = 8981.159419 C = 9574.737617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.173 3.827 3 C -0.172 4.172 4 C 0.142 3.858 5 C 0.561 3.439 6 O -0.534 6.534 7 N -0.684 5.684 8 C 0.117 3.883 9 C 0.061 3.939 10 H 0.108 0.892 11 C 0.143 3.857 12 N -0.587 5.587 13 C -0.248 4.248 14 H 0.070 0.930 15 C 0.001 3.999 16 N -0.907 5.907 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.160 3.840 22 C -0.172 4.172 23 C 0.067 3.933 24 O -0.369 6.369 25 N -0.498 5.498 26 C 0.298 3.702 27 N -0.513 5.513 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.413 0.587 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.020 0.980 37 H 0.255 0.745 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.284 -8.405 5.143 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.026 3.974 3 C -0.195 4.195 4 C -0.006 4.006 5 C 0.344 3.656 6 O -0.411 6.411 7 N -0.334 5.334 8 C -0.006 4.006 9 C 0.002 3.998 10 H 0.125 0.875 11 C 0.018 3.982 12 N -0.308 5.308 13 C -0.377 4.377 14 H 0.088 0.912 15 C -0.196 4.196 16 N -0.553 5.553 17 Si 0.734 3.266 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.215 1.215 21 C 0.032 3.968 22 C -0.213 4.213 23 C -0.010 4.010 24 O -0.288 6.288 25 N -0.215 5.215 26 C 0.010 3.990 27 N -0.228 5.228 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.177 0.823 32 H 0.249 0.751 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.038 0.962 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -13.283 -8.379 5.170 16.534 hybrid contribution 0.528 0.466 -1.025 1.244 sum -12.754 -7.913 4.145 15.572 Atomic orbital electron populations 1.20810 0.87276 1.04323 1.03960 1.21831 0.97895 0.87803 0.89904 1.22821 0.94722 1.01348 1.00648 1.21793 0.92121 0.92759 0.93882 1.17787 0.82833 0.86815 0.78212 1.90780 1.71422 1.28148 1.50744 1.45810 1.04996 1.11738 1.70819 1.21869 0.90816 0.85618 1.02347 1.22218 0.90801 0.96531 0.90269 0.87456 1.20747 0.83160 0.93826 1.00434 1.44119 1.06549 1.67321 1.12792 1.19305 0.90781 1.42592 0.85015 0.91225 1.24900 0.97272 1.00386 0.97058 1.69875 1.17378 1.47117 1.20934 0.86200 0.79447 0.79073 0.81894 1.20382 1.21855 1.21527 1.20376 0.96935 0.90036 0.89495 1.23585 0.97353 1.01333 0.99056 1.22352 0.87842 0.90882 0.99971 1.87510 1.55191 1.47995 1.38094 1.68379 1.41900 0.98565 1.12674 1.24989 0.86472 0.96824 0.90705 1.68214 1.10585 1.30471 1.13560 0.89400 0.89705 0.89793 0.82271 0.75078 0.89898 0.91539 0.87762 0.96179 0.93514 0.94852 0.95015 0.92483 0.93177 0.91857 0.92972 0.78072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.22 36.01 0.37 -0.30 16 2 C 0.17 1.77 6.83 -82.23 -0.56 1.20 16 3 C -0.17 -2.02 9.41 -38.90 -0.37 -2.39 16 4 C 0.14 2.01 6.79 -82.64 -0.56 1.44 16 5 C 0.56 9.33 7.83 -12.05 -0.09 9.24 16 6 O -0.53 -10.02 16.43 5.38 0.09 -9.93 16 7 N -0.68 -11.55 5.39 -61.06 -0.33 -11.88 16 8 C 0.12 2.16 5.26 -4.04 -0.02 2.14 16 9 C 0.06 1.23 2.01 -29.64 -0.06 1.17 16 10 H 0.11 2.46 5.24 -51.93 -0.27 2.19 16 11 C 0.14 3.21 4.71 -4.93 -0.02 3.18 16 12 N -0.59 -13.98 2.61 -174.50 -0.46 -14.44 16 13 C -0.25 -6.40 9.62 -15.06 -0.14 -6.55 16 14 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 15 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 16 N -0.91 -23.58 9.57 55.49 0.53 -23.05 16 17 Si 0.90 20.79 29.60 -169.99 -5.03 15.76 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 C 0.16 3.37 5.33 -4.43 -0.02 3.35 16 22 C -0.17 -3.21 6.75 -24.34 -0.16 -3.37 16 23 C 0.07 1.27 6.38 38.32 0.24 1.51 16 24 O -0.37 -7.26 9.34 -31.95 -0.30 -7.56 16 25 N -0.50 -6.61 9.70 -11.14 -0.11 -6.72 16 26 C 0.30 3.28 12.27 -92.26 -1.13 2.15 16 27 N -0.51 -5.69 10.36 -10.81 -0.11 -5.80 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.16 1.67 7.74 -52.49 -0.41 1.27 16 32 H 0.41 6.76 7.57 -40.82 -0.31 6.45 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.10 2.55 6.03 -51.93 -0.31 2.24 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.25 6.53 8.31 -40.82 -0.34 6.20 16 38 H 0.03 0.69 7.96 -51.93 -0.41 0.28 16 39 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.34 6.66 -51.93 -0.35 0.99 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.20 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -29.14 359.29 -9.17 -38.31 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.25 Total: 7.16 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: -2.63 Total: 12.72 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.47 Total: -61.88 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.21 Total: -17.49 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.14 -9.17 -38.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073575963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.212 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds