Wall clock time and date at job start Tue Mar 31 2020 13:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38806 * 120.42394 * 2 1 4 4 C 1.39497 * 118.25858 * 180.02562 * 3 2 1 5 5 C 1.48455 * 120.54774 * 179.97438 * 4 3 2 6 6 O 1.21480 * 119.99891 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00264 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00527 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47565 * 179.97438 * 8 7 5 10 10 H 1.09000 * 108.56983 * 62.05194 * 9 8 7 11 11 C 1.46924 * 108.62023 * 180.02562 * 9 8 7 12 12 N 1.50112 * 106.77412 * 177.92239 * 11 9 8 13 13 C 1.36938 * 120.63810 * 111.37104 * 12 11 9 14 14 H 1.08003 * 120.00167 * 155.67298 * 13 12 11 15 15 C 1.38807 * 119.99836 * 335.67328 * 13 12 11 16 16 N 1.31616 * 120.00114 * 340.63038 * 15 13 12 17 17 Si 1.86798 * 120.00003 * 160.62345 * 15 13 12 18 18 H 1.48507 * 109.47441 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46997 * 120.00082 * 17 15 13 20 20 H 1.48500 * 109.47522 * 240.00383 * 17 15 13 21 21 C 1.43432 * 118.72958 * 291.34535 * 12 11 9 22 22 C 1.55327 * 116.23739 * 89.35504 * 21 12 11 23 23 C 1.55191 * 108.87588 * 319.46754 * 22 21 12 24 24 O 1.39647 * 110.56485 * 322.14207 * 23 22 21 25 25 N 1.33100 * 118.90201 * 359.97438 * 4 3 2 26 26 C 1.31549 * 120.73971 * 0.02562 * 25 4 3 27 27 N 1.31910 * 121.91845 * 0.02562 * 26 25 4 28 28 H 1.09000 * 109.47125 * 90.00109 * 1 2 3 29 29 H 1.08996 * 109.47119 * 209.99929 * 1 2 3 30 30 H 1.09004 * 109.47363 * 329.99890 * 1 2 3 31 31 H 1.07998 * 120.87080 * 0.02562 * 3 2 1 32 32 H 0.97003 * 120.00043 * 359.97438 * 7 5 4 33 33 H 1.09003 * 109.46846 * 299.99983 * 8 7 5 34 34 H 1.09005 * 109.47312 * 59.99340 * 8 7 5 35 35 H 1.09002 * 109.98719 * 297.23431 * 11 9 8 36 36 H 1.09004 * 109.99002 * 58.60423 * 11 9 8 37 37 H 0.97005 * 119.99982 * 180.02562 * 16 15 13 38 38 H 1.08991 * 108.12531 * 211.11492 * 21 12 11 39 39 H 1.08990 * 108.12440 * 327.81522 * 21 12 11 40 40 H 1.09006 * 109.57193 * 79.28100 * 22 21 12 41 41 H 1.09000 * 109.57187 * 199.64675 * 22 21 12 42 42 H 1.08992 * 109.26229 * 82.42396 * 23 22 21 43 43 H 1.08998 * 109.25543 * 201.90409 * 23 22 21 44 44 H 1.08003 * 119.04339 * 179.72037 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1442 -0.0005 5 6 4.4062 2.3933 -0.0011 6 8 3.8493 3.4729 -0.0007 7 7 5.7524 2.3296 -0.0022 8 6 6.5442 3.5621 -0.0022 9 6 8.0335 3.2117 -0.0029 10 1 8.2601 2.6610 -0.9158 11 6 8.8090 4.4596 -0.0023 12 7 10.2576 4.0694 0.0492 13 6 11.0763 4.2822 -1.0277 14 1 12.1425 4.3792 -0.8847 15 6 10.5360 4.3733 -2.3030 16 7 9.3356 3.8909 -2.5452 17 14 11.5125 5.1808 -3.6755 18 1 12.8234 5.6376 -3.1480 19 1 11.7338 4.2002 -4.7686 20 1 10.7569 6.3460 -4.2014 21 6 10.7680 3.4698 1.2481 22 6 10.6756 1.9217 1.3347 23 6 9.3088 1.4671 0.7571 24 8 8.3024 2.3678 1.1119 25 7 4.2027 -0.0445 -0.0005 26 6 3.4954 -1.1537 -0.0005 27 7 2.1764 -1.1397 -0.0010 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6912 2.1442 0.0004 32 1 6.1972 1.4675 -0.0022 33 1 6.3075 4.1459 -0.8918 34 1 6.3088 4.1452 0.8882 35 1 8.6073 5.0241 -0.9126 36 1 8.5527 5.0572 0.8726 37 1 8.9582 3.9542 -3.4365 38 1 11.8154 3.7533 1.3496 39 1 10.2225 3.8869 2.0945 40 1 11.4836 1.4747 0.7553 41 1 10.7542 1.6089 2.3759 42 1 9.3773 1.4143 -0.3294 43 1 9.0626 0.4807 1.1501 44 1 4.0097 -2.1034 -0.0051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073575963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:04 Heat of formation + Delta-G solvation = -18.365631 kcal Electronic energy + Delta-G solvation = -27324.510147 eV Core-core repulsion = 23470.516300 eV Total energy + Delta-G solvation = -3853.993847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.33517 -40.96895 -40.11677 -36.81944 -36.16541 -35.54758 -33.88988 -33.67168 -32.90715 -30.37358 -29.62943 -27.68718 -27.07462 -25.71092 -24.76604 -23.99214 -22.42978 -21.65967 -21.29514 -19.43726 -18.97858 -18.37840 -17.70569 -17.02660 -16.75549 -16.67383 -16.54467 -16.50338 -16.15552 -15.68805 -15.62903 -15.50337 -14.83681 -14.63238 -14.24682 -14.14807 -14.02269 -13.79226 -13.58090 -13.29754 -13.20251 -12.96721 -12.65192 -12.51983 -12.26644 -12.04229 -11.92990 -11.83246 -11.64401 -11.61379 -11.38634 -11.19791 -10.71156 -10.57041 -10.46737 -10.28619 -10.19162 -8.72222 -7.89795 -5.30341 -0.65444 -0.15915 1.46547 1.51599 1.58645 1.59184 1.85810 2.51987 2.70528 2.81593 3.01150 3.09235 3.27577 3.38842 3.50694 3.72785 3.91183 4.10798 4.25537 4.34407 4.37208 4.38123 4.48441 4.54847 4.71950 4.73916 4.75525 4.78868 4.81374 4.91615 5.01970 5.06991 5.17898 5.18205 5.27196 5.33595 5.34032 5.40143 5.48645 5.68547 5.73476 6.33175 6.37517 6.49526 6.85774 6.96940 7.10821 7.83031 8.35808 9.16345 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.003117 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.551728 B = 8981.159419 C = 9574.737617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.179 3.821 3 C -0.173 4.173 4 C 0.120 3.880 5 C 0.561 3.439 6 O -0.561 6.561 7 N -0.684 5.684 8 C 0.129 3.871 9 C 0.079 3.921 10 H 0.083 0.917 11 C 0.145 3.855 12 N -0.602 5.602 13 C -0.261 4.261 14 H 0.064 0.936 15 C -0.037 4.037 16 N -0.918 5.918 17 Si 0.959 3.041 18 H -0.275 1.275 19 H -0.295 1.295 20 H -0.292 1.292 21 C 0.154 3.846 22 C -0.164 4.164 23 C 0.068 3.932 24 O -0.367 6.367 25 N -0.517 5.517 26 C 0.297 3.703 27 N -0.518 5.518 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.168 0.832 32 H 0.416 0.584 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.028 0.972 37 H 0.250 0.750 38 H 0.032 0.968 39 H 0.036 0.964 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.084 0.916 44 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.403 -9.836 5.866 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.031 3.969 3 C -0.196 4.196 4 C -0.026 4.026 5 C 0.345 3.655 6 O -0.439 6.439 7 N -0.333 5.333 8 C 0.004 3.996 9 C 0.020 3.980 10 H 0.100 0.900 11 C 0.020 3.980 12 N -0.323 5.323 13 C -0.391 4.391 14 H 0.082 0.918 15 C -0.234 4.234 16 N -0.564 5.564 17 Si 0.789 3.211 18 H -0.200 1.200 19 H -0.222 1.222 20 H -0.219 1.219 21 C 0.026 3.974 22 C -0.205 4.205 23 C -0.009 4.009 24 O -0.286 6.286 25 N -0.234 5.234 26 C 0.009 3.991 27 N -0.233 5.233 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.186 0.814 32 H 0.253 0.747 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.102 0.898 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -14.389 -9.831 5.915 18.403 hybrid contribution 0.843 0.866 -1.207 1.708 sum -13.545 -8.965 4.708 16.912 Atomic orbital electron populations 1.20965 0.84282 1.05654 1.05245 1.22454 0.99675 0.86854 0.87941 1.22997 0.93782 1.02550 1.00295 1.21478 0.92751 0.92079 0.96326 1.18169 0.82583 0.87621 0.77087 1.90751 1.71814 1.29490 1.51887 1.45716 1.05281 1.11159 1.71136 1.21574 0.89946 0.86235 1.01805 1.21778 0.91514 0.95250 0.89432 0.89969 1.20671 0.83148 0.94674 0.99468 1.44248 1.06850 1.68152 1.13047 1.19435 0.90873 1.42875 0.85893 0.91850 1.25477 0.98247 1.00973 0.98655 1.70008 1.18137 1.47440 1.20820 0.85343 0.78439 0.77847 0.79512 1.19950 1.22191 1.21904 1.20496 0.96780 0.91725 0.88428 1.23499 0.97100 0.99163 1.00765 1.22393 0.87888 0.92141 0.98494 1.87506 1.55482 1.47993 1.37609 1.68342 1.42595 0.98781 1.13680 1.25640 0.86744 0.97192 0.89514 1.68346 1.10626 1.30735 1.13602 0.87894 0.88830 0.88021 0.81411 0.74735 0.91118 0.91409 0.90183 0.95413 0.94020 0.94954 0.94602 0.92733 0.90312 0.94625 0.89794 0.75041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.22 71.24 0.73 -0.27 16 2 C 0.18 3.26 6.83 42.64 0.29 3.55 16 3 C -0.17 -3.85 9.41 22.71 0.21 -3.64 16 4 C 0.12 3.33 6.79 41.98 0.29 3.61 16 5 C 0.56 18.83 7.83 86.97 0.68 19.52 16 6 O -0.56 -21.31 16.43 -3.65 -0.06 -21.37 16 7 N -0.68 -23.34 5.39 -465.39 -2.51 -25.85 16 8 C 0.13 4.84 5.26 86.38 0.45 5.30 16 9 C 0.08 3.26 2.01 28.71 0.06 3.32 16 10 H 0.08 3.88 5.24 -2.39 -0.01 3.87 16 11 C 0.15 6.62 4.71 83.79 0.39 7.02 16 12 N -0.60 -28.88 2.61 -706.01 -1.84 -30.72 16 13 C -0.26 -13.65 9.62 84.03 0.81 -12.84 16 14 H 0.06 3.33 7.88 -2.91 -0.02 3.30 16 15 C -0.04 -1.95 4.92 84.86 0.42 -1.53 16 16 N -0.92 -48.77 9.57 21.65 0.21 -48.56 16 17 Si 0.96 43.23 29.60 68.60 2.03 45.26 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 C 0.15 6.35 5.33 87.75 0.47 6.82 16 22 C -0.16 -5.86 6.75 32.15 0.22 -5.64 16 23 C 0.07 2.50 6.38 72.73 0.46 2.96 16 24 O -0.37 -14.16 9.34 -137.26 -1.28 -15.44 16 25 N -0.52 -13.25 9.70 -189.17 -1.84 -15.08 16 26 C 0.30 5.99 12.27 180.92 2.22 8.21 16 27 N -0.52 -10.35 10.36 -188.10 -1.95 -12.30 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.64 8.10 -2.38 -0.02 0.62 16 31 H 0.17 3.34 7.74 -2.91 -0.02 3.32 16 32 H 0.42 13.67 7.57 -92.71 -0.70 12.97 16 33 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 35 H 0.08 4.05 6.03 -2.39 -0.01 4.04 16 36 H 0.03 1.20 8.14 -2.38 -0.02 1.19 16 37 H 0.25 13.12 8.31 -92.70 -0.77 12.35 16 38 H 0.03 1.32 7.96 -2.39 -0.02 1.30 16 39 H 0.04 1.43 7.98 -2.39 -0.02 1.41 16 40 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.04 1.51 6.66 -2.39 -0.02 1.49 16 43 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.23 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -62.70 359.29 0.78 -61.92 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.32 Total: 25.76 kcal Atomic # 6 Polarization: 28.68 SS G_CDS: 7.70 Total: 36.38 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -7.93 Total: -132.51 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.34 Total: -36.81 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -62.70 0.78 -61.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073575963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.554 kcal (2) G-P(sol) polarization free energy of solvation -62.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds