Wall clock time and date at job start Tue Mar 31 2020 13:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38817 * 120.41796 * 2 1 4 4 C 1.38780 * 118.50576 * 180.02562 * 3 2 1 5 5 N 1.32117 * 119.16409 * 359.97438 * 4 3 2 6 6 C 1.32442 * 120.77525 * 359.97438 * 5 4 3 7 7 C 1.48536 * 119.19043 * 179.97438 * 6 5 4 8 8 O 1.21470 * 119.99895 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99676 * 0.03165 * 7 6 5 10 10 C 1.46496 * 119.99645 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47414 * 179.97438 * 10 9 7 12 12 H 1.09002 * 108.56860 * 57.93909 * 11 10 9 13 13 C 1.46917 * 108.62472 * 175.75623 * 11 10 9 14 14 N 1.50111 * 106.77746 * 177.91831 * 13 11 10 15 15 C 1.36944 * 120.63591 * 111.32429 * 14 13 11 16 16 H 1.07997 * 119.99656 * 155.70169 * 15 14 13 17 17 C 1.38813 * 119.99821 * 335.69658 * 15 14 13 18 18 N 1.31617 * 120.00082 * 340.69134 * 17 15 14 19 19 Si 1.86798 * 119.99986 * 160.68837 * 17 15 14 20 20 H 1.48495 * 109.47118 * 89.99845 * 19 17 15 21 21 H 1.48492 * 109.47211 * 210.00377 * 19 17 15 22 22 H 1.48501 * 109.47052 * 330.00067 * 19 17 15 23 23 C 1.43423 * 118.73036 * 291.34120 * 14 13 11 24 24 C 1.55327 * 116.23788 * 89.35758 * 23 14 13 25 25 C 1.55196 * 108.87263 * 319.46536 * 24 23 14 26 26 O 1.39636 * 110.57133 * 322.14459 * 25 24 23 27 27 N 1.32098 * 120.41667 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46942 * 269.97575 * 1 2 3 29 29 H 1.09000 * 109.47252 * 29.97817 * 1 2 3 30 30 H 1.09001 * 109.47235 * 149.97992 * 1 2 3 31 31 H 1.08009 * 120.74768 * 0.02562 * 3 2 1 32 32 H 1.08008 * 120.41416 * 180.02562 * 4 3 2 33 33 H 0.97000 * 120.00318 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47367 * 299.99318 * 10 9 7 35 35 H 1.09003 * 109.47767 * 59.99411 * 10 9 7 36 36 H 1.08999 * 109.98838 * 297.23380 * 13 11 10 37 37 H 1.09004 * 109.99086 * 58.60344 * 13 11 10 38 38 H 0.97001 * 120.00162 * 180.02562 * 18 17 15 39 39 H 1.09007 * 108.12488 * 327.60217 * 23 14 13 40 40 H 1.08998 * 107.96911 * 210.98902 * 23 14 13 41 41 H 1.09003 * 109.57469 * 199.65396 * 24 23 14 42 42 H 1.09004 * 109.57353 * 79.28395 * 24 23 14 43 43 H 1.09000 * 109.25909 * 201.85892 * 25 24 23 44 44 H 1.09003 * 109.25479 * 82.42595 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1508 -0.0005 5 7 4.2019 -0.0237 -0.0005 6 6 3.5006 -1.1472 0.0005 7 6 4.2170 -2.4484 -0.0001 8 8 3.5884 -3.4878 0.0004 9 7 5.5645 -2.4757 -0.0010 10 6 6.2710 -3.7590 -0.0010 11 6 7.7807 -3.5101 -0.0028 12 1 8.0349 -2.9120 0.8722 13 6 8.4696 -4.8036 0.1002 14 7 9.9418 -4.5163 0.0428 15 6 10.7326 -4.7020 1.1453 16 1 11.7911 -4.8801 1.0267 17 6 10.1735 -4.6612 2.4152 18 7 9.0054 -4.0841 2.6018 19 14 11.0790 -5.4254 3.8593 20 1 11.9608 -4.4077 4.4853 21 1 10.0949 -5.9106 4.8599 22 1 11.9013 -6.5656 3.3806 23 6 10.5044 -4.0430 -1.1887 24 6 10.5185 -2.5030 -1.3902 25 6 9.1796 -1.9162 -0.8689 26 8 8.1181 -2.7712 -1.1722 27 7 2.1758 -1.1392 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6890 2.1433 0.0004 32 1 4.1744 2.0635 -0.0001 33 1 6.0664 -1.6457 -0.0017 34 1 5.9969 -4.3248 0.8894 35 1 5.9955 -4.3256 -0.8906 36 1 8.2203 -5.2842 1.0462 37 1 8.1826 -5.4461 -0.7324 38 1 8.6149 -4.0553 3.4893 39 1 9.9432 -4.4875 -2.0108 40 1 11.5317 -4.4023 -1.2491 41 1 10.6290 -2.2744 -2.4503 42 1 11.3488 -2.0693 -0.8329 43 1 9.0056 -0.9471 -1.3365 44 1 9.2402 -1.7875 0.2118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073589562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:11 Heat of formation + Delta-G solvation = 5.533657 kcal Electronic energy + Delta-G solvation = -27357.671288 eV Core-core repulsion = 23504.713792 eV Total energy + Delta-G solvation = -3852.957496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.39846 -39.39400 -38.52854 -35.06462 -34.88498 -34.36668 -32.85903 -32.11998 -31.14203 -29.04900 -28.51481 -26.34972 -25.30899 -24.57977 -23.36031 -22.51115 -20.78202 -20.46411 -19.57850 -17.98797 -17.87465 -16.98987 -16.10541 -16.05442 -15.65724 -15.45562 -15.02687 -14.84343 -14.53660 -14.26009 -14.07615 -13.82620 -13.59664 -13.30178 -13.08479 -12.96625 -12.67818 -12.50964 -12.22901 -11.93454 -11.42520 -11.39737 -11.20987 -10.84979 -10.83397 -10.72519 -10.48139 -10.14978 -9.99060 -9.87400 -9.83508 -9.64494 -9.52041 -9.48252 -8.77734 -8.68677 -8.48842 -6.80587 -5.90856 -3.29283 0.29397 0.81675 2.71770 2.91409 3.33848 3.42376 3.44841 3.75638 3.76380 4.09522 4.23094 4.44971 4.63405 4.72758 4.73511 5.02922 5.12156 5.18236 5.25531 5.29895 5.42176 5.58246 5.73161 5.85074 5.94510 6.00820 6.03925 6.16020 6.35326 6.41854 6.47886 6.55942 6.69562 6.70675 6.72898 6.82927 6.91305 6.97574 7.13884 7.34076 7.56881 7.73326 7.91709 8.16218 8.33503 8.38574 9.08352 9.76627 10.30945 11.18297 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.003174 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.725705 B = 8820.771214 C = 9406.671410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.169 3.831 3 C -0.216 4.216 4 C 0.149 3.851 5 N -0.496 5.496 6 C 0.297 3.703 7 C 0.576 3.424 8 O -0.514 6.514 9 N -0.687 5.687 10 C 0.120 3.880 11 C 0.060 3.940 12 H 0.108 0.892 13 C 0.143 3.857 14 N -0.587 5.587 15 C -0.249 4.249 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.907 5.907 19 Si 0.903 3.097 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.160 3.840 24 C -0.172 4.172 25 C 0.068 3.932 26 O -0.369 6.369 27 N -0.471 5.471 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.152 0.848 32 H 0.176 0.824 33 H 0.412 0.588 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.020 0.980 38 H 0.255 0.745 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.357 12.563 -5.347 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.022 3.978 3 C -0.238 4.238 4 C -0.017 4.017 5 N -0.213 5.213 6 C 0.026 3.974 7 C 0.356 3.644 8 O -0.387 6.387 9 N -0.339 5.339 10 C -0.004 4.004 11 C 0.002 3.998 12 H 0.126 0.874 13 C 0.018 3.982 14 N -0.308 5.308 15 C -0.378 4.378 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.553 5.553 19 Si 0.733 3.267 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.206 1.206 23 C 0.032 3.968 24 C -0.213 4.213 25 C -0.010 4.010 26 O -0.287 6.287 27 N -0.187 5.187 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.170 0.830 32 H 0.193 0.807 33 H 0.248 0.752 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.039 0.961 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.467 10.822 -5.370 17.360 hybrid contribution 0.436 1.259 1.050 1.696 sum -12.031 12.081 -4.320 17.589 Atomic orbital electron populations 1.20810 0.87330 1.04294 1.03942 1.21888 0.97965 0.87861 0.90056 1.22990 0.96686 1.00625 1.03514 1.23315 0.92174 0.96100 0.90131 1.68351 1.41591 0.98836 1.12568 1.23072 0.87344 0.93203 0.93736 1.17250 0.82634 0.85737 0.78734 1.90789 1.66931 1.32023 1.48949 1.45755 1.04829 1.11438 1.71847 1.21841 0.92068 0.84105 1.02371 1.22210 0.90445 0.98448 0.88729 0.87400 1.20747 0.83160 0.93396 1.00864 1.44117 1.04279 1.73664 1.08718 1.19245 0.92286 1.42038 0.84215 0.91321 1.24897 0.97613 0.99708 0.97354 1.69860 1.18904 1.44673 1.21818 0.86279 0.78808 0.79323 0.82253 1.21570 1.21533 1.20596 1.20382 0.96651 0.90809 0.89005 1.23586 0.97476 1.01262 0.98997 1.22343 0.87046 0.91335 1.00309 1.87517 1.50603 1.55409 1.35210 1.68123 1.08711 1.30350 1.11533 0.89435 0.89938 0.89574 0.83050 0.80706 0.75218 0.89910 0.91499 0.87752 0.96146 0.93449 0.94982 0.94898 0.93204 0.92509 0.93044 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.22 36.01 0.37 -0.34 16 2 C 0.17 1.79 6.82 -82.26 -0.56 1.23 16 3 C -0.22 -1.74 9.87 -39.17 -0.39 -2.13 16 4 C 0.15 1.41 11.30 -17.23 -0.19 1.21 16 5 N -0.50 -6.77 9.57 -11.12 -0.11 -6.88 16 6 C 0.30 4.76 7.60 -157.08 -1.19 3.57 16 7 C 0.58 10.65 7.85 -12.01 -0.09 10.56 16 8 O -0.51 -10.93 16.86 5.39 0.09 -10.84 16 9 N -0.69 -12.21 5.42 -61.03 -0.33 -12.54 16 10 C 0.12 2.28 5.24 -4.04 -0.02 2.26 16 11 C 0.06 1.25 1.95 -29.64 -0.06 1.19 16 12 H 0.11 2.50 5.23 -51.93 -0.27 2.23 16 13 C 0.14 3.25 4.71 -4.94 -0.02 3.23 16 14 N -0.59 -14.12 2.61 -174.50 -0.46 -14.57 16 15 C -0.25 -6.47 9.61 -15.06 -0.14 -6.62 16 16 H 0.07 1.79 7.87 -52.49 -0.41 1.38 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 18 N -0.91 -23.76 9.56 55.49 0.53 -23.23 16 19 Si 0.90 20.92 29.60 -169.99 -5.03 15.89 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.16 3.40 5.33 -4.44 -0.02 3.38 16 24 C -0.17 -3.23 6.75 -24.33 -0.16 -3.40 16 25 C 0.07 1.28 6.38 38.32 0.24 1.53 16 26 O -0.37 -7.37 9.54 -31.92 -0.30 -7.68 16 27 N -0.47 -7.11 10.07 -7.38 -0.07 -7.19 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 32 H 0.18 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.41 6.96 7.63 -40.82 -0.31 6.64 16 34 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.10 2.59 6.02 -51.93 -0.31 2.28 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 39 H 0.03 0.66 7.99 -51.93 -0.41 0.25 16 40 H 0.03 0.69 7.95 -51.93 -0.41 0.27 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.34 6.66 -51.93 -0.35 1.00 16 LS Contribution 360.12 15.07 5.43 5.43 Total: -1.00 -31.08 360.12 -8.86 -39.94 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.27 Total: 6.04 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: -2.34 Total: 15.64 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.44 Total: -64.41 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.21 Total: -18.52 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.08 -8.86 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073589562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.473 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds