Wall clock time and date at job start Tue Mar 31 2020 13:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38817 * 120.41796 * 2 1 4 4 C 1.38780 * 118.50576 * 180.02562 * 3 2 1 5 5 N 1.32117 * 119.16409 * 359.97438 * 4 3 2 6 6 C 1.32442 * 120.77525 * 359.97438 * 5 4 3 7 7 C 1.48536 * 119.19043 * 179.97438 * 6 5 4 8 8 O 1.21470 * 119.99895 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99676 * 0.03165 * 7 6 5 10 10 C 1.46496 * 119.99645 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47414 * 179.97438 * 10 9 7 12 12 H 1.09002 * 108.56860 * 57.93909 * 11 10 9 13 13 C 1.46917 * 108.62472 * 175.75623 * 11 10 9 14 14 N 1.50111 * 106.77746 * 177.91831 * 13 11 10 15 15 C 1.36944 * 120.63591 * 111.32429 * 14 13 11 16 16 H 1.07997 * 119.99656 * 155.70169 * 15 14 13 17 17 C 1.38813 * 119.99821 * 335.69658 * 15 14 13 18 18 N 1.31617 * 120.00082 * 340.69134 * 17 15 14 19 19 Si 1.86798 * 119.99986 * 160.68837 * 17 15 14 20 20 H 1.48495 * 109.47118 * 89.99845 * 19 17 15 21 21 H 1.48492 * 109.47211 * 210.00377 * 19 17 15 22 22 H 1.48501 * 109.47052 * 330.00067 * 19 17 15 23 23 C 1.43423 * 118.73036 * 291.34120 * 14 13 11 24 24 C 1.55327 * 116.23788 * 89.35758 * 23 14 13 25 25 C 1.55196 * 108.87263 * 319.46536 * 24 23 14 26 26 O 1.39636 * 110.57133 * 322.14459 * 25 24 23 27 27 N 1.32098 * 120.41667 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46942 * 269.97575 * 1 2 3 29 29 H 1.09000 * 109.47252 * 29.97817 * 1 2 3 30 30 H 1.09001 * 109.47235 * 149.97992 * 1 2 3 31 31 H 1.08009 * 120.74768 * 0.02562 * 3 2 1 32 32 H 1.08008 * 120.41416 * 180.02562 * 4 3 2 33 33 H 0.97000 * 120.00318 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47367 * 299.99318 * 10 9 7 35 35 H 1.09003 * 109.47767 * 59.99411 * 10 9 7 36 36 H 1.08999 * 109.98838 * 297.23380 * 13 11 10 37 37 H 1.09004 * 109.99086 * 58.60344 * 13 11 10 38 38 H 0.97001 * 120.00162 * 180.02562 * 18 17 15 39 39 H 1.09007 * 108.12488 * 327.60217 * 23 14 13 40 40 H 1.08998 * 107.96911 * 210.98902 * 23 14 13 41 41 H 1.09003 * 109.57469 * 199.65396 * 24 23 14 42 42 H 1.09004 * 109.57353 * 79.28395 * 24 23 14 43 43 H 1.09000 * 109.25909 * 201.85892 * 25 24 23 44 44 H 1.09003 * 109.25479 * 82.42595 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1508 -0.0005 5 7 4.2019 -0.0237 -0.0005 6 6 3.5006 -1.1472 0.0005 7 6 4.2170 -2.4484 -0.0001 8 8 3.5884 -3.4878 0.0004 9 7 5.5645 -2.4757 -0.0010 10 6 6.2710 -3.7590 -0.0010 11 6 7.7807 -3.5101 -0.0028 12 1 8.0349 -2.9120 0.8722 13 6 8.4696 -4.8036 0.1002 14 7 9.9418 -4.5163 0.0428 15 6 10.7326 -4.7020 1.1453 16 1 11.7911 -4.8801 1.0267 17 6 10.1735 -4.6612 2.4152 18 7 9.0054 -4.0841 2.6018 19 14 11.0790 -5.4254 3.8593 20 1 11.9608 -4.4077 4.4853 21 1 10.0949 -5.9106 4.8599 22 1 11.9013 -6.5656 3.3806 23 6 10.5044 -4.0430 -1.1887 24 6 10.5185 -2.5030 -1.3902 25 6 9.1796 -1.9162 -0.8689 26 8 8.1181 -2.7712 -1.1722 27 7 2.1758 -1.1392 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6890 2.1433 0.0004 32 1 4.1744 2.0635 -0.0001 33 1 6.0664 -1.6457 -0.0017 34 1 5.9969 -4.3248 0.8894 35 1 5.9955 -4.3256 -0.8906 36 1 8.2203 -5.2842 1.0462 37 1 8.1826 -5.4461 -0.7324 38 1 8.6149 -4.0553 3.4893 39 1 9.9432 -4.4875 -2.0108 40 1 11.5317 -4.4023 -1.2491 41 1 10.6290 -2.2744 -2.4503 42 1 11.3488 -2.0693 -0.8329 43 1 9.0056 -0.9471 -1.3365 44 1 9.2402 -1.7875 0.2118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073589562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:10 Heat of formation + Delta-G solvation = -16.099145 kcal Electronic energy + Delta-G solvation = -27358.609356 eV Core-core repulsion = 23504.713792 eV Total energy + Delta-G solvation = -3853.895564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.33741 -40.93330 -40.03620 -36.80660 -36.20204 -35.49192 -33.91789 -33.66873 -32.91067 -30.42306 -29.50703 -27.77122 -27.06281 -25.96420 -24.22244 -24.06793 -22.43474 -21.80553 -21.29045 -19.27248 -18.88815 -18.73981 -17.71020 -17.02572 -16.85296 -16.76053 -16.58081 -16.30527 -16.02653 -15.56863 -15.53947 -15.32958 -14.81242 -14.63221 -14.23088 -14.16464 -14.01618 -13.76125 -13.57863 -13.28156 -13.17620 -12.95494 -12.61714 -12.51601 -12.33361 -12.30948 -11.91922 -11.77759 -11.74971 -11.38967 -11.29586 -11.17100 -10.62619 -10.55276 -10.41382 -10.28447 -10.17609 -8.71269 -7.88686 -5.29329 -0.63816 0.04234 1.47453 1.51439 1.51998 1.59326 1.68343 2.52784 2.73992 2.86294 3.08782 3.15998 3.28757 3.50509 3.52163 3.82513 4.03385 4.12604 4.26894 4.31116 4.37475 4.39118 4.54872 4.58282 4.71664 4.72886 4.74527 4.78071 4.79853 4.92077 5.05853 5.07752 5.18804 5.19261 5.28869 5.35318 5.37269 5.40750 5.49544 5.69104 5.91540 6.28272 6.37637 6.51137 6.84379 7.01886 7.11473 7.83918 8.36978 9.17299 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.003174 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.725705 B = 8820.771214 C = 9406.671410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.148 3.852 3 C -0.182 4.182 4 C 0.138 3.862 5 N -0.512 5.512 6 C 0.266 3.734 7 C 0.573 3.427 8 O -0.555 6.555 9 N -0.682 5.682 10 C 0.130 3.870 11 C 0.081 3.919 12 H 0.085 0.915 13 C 0.145 3.855 14 N -0.601 5.601 15 C -0.262 4.262 16 H 0.064 0.936 17 C -0.037 4.037 18 N -0.918 5.918 19 Si 0.959 3.041 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.278 1.278 23 C 0.153 3.847 24 C -0.164 4.164 25 C 0.068 3.932 26 O -0.368 6.368 27 N -0.507 5.507 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.204 0.796 32 H 0.218 0.782 33 H 0.416 0.584 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.027 0.973 38 H 0.250 0.750 39 H 0.035 0.965 40 H 0.032 0.968 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.121 15.597 -6.085 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.002 3.998 3 C -0.204 4.204 4 C -0.026 4.026 5 N -0.230 5.230 6 C -0.004 4.004 7 C 0.356 3.644 8 O -0.431 6.431 9 N -0.333 5.333 10 C 0.006 3.994 11 C 0.022 3.978 12 H 0.103 0.897 13 C 0.020 3.980 14 N -0.323 5.323 15 C -0.392 4.392 16 H 0.082 0.918 17 C -0.234 4.234 18 N -0.564 5.564 19 Si 0.789 3.211 20 H -0.214 1.214 21 H -0.221 1.221 22 H -0.204 1.204 23 C 0.025 3.975 24 C -0.205 4.205 25 C -0.010 4.010 26 O -0.286 6.286 27 N -0.225 5.225 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.090 0.910 31 H 0.221 0.779 32 H 0.234 0.766 33 H 0.253 0.747 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.220 13.895 -6.130 20.135 hybrid contribution 0.623 0.438 1.233 1.449 sum -12.597 14.333 -4.897 19.701 Atomic orbital electron populations 1.20948 0.84728 1.05407 1.04940 1.22658 0.99693 0.87648 0.89752 1.23545 0.96115 1.01664 0.99051 1.24137 0.93562 0.95839 0.89088 1.68284 1.42186 0.99513 1.13052 1.22338 0.87853 0.92610 0.97594 1.17720 0.82476 0.86788 0.77422 1.90740 1.67645 1.33888 1.50818 1.45621 1.04944 1.10926 1.71776 1.21567 0.91310 0.84823 1.01697 1.21762 0.90911 0.97007 0.88134 0.89736 1.20662 0.83153 0.94407 0.99764 1.44241 1.04536 1.74424 1.09067 1.19400 0.92411 1.42261 0.85138 0.91790 1.25486 0.98483 1.00226 0.99159 1.69999 1.19661 1.45055 1.21679 0.85408 0.77615 0.78464 0.79642 1.21448 1.22075 1.20379 1.20509 0.96461 0.92651 0.87843 1.23495 0.97234 0.98969 1.00781 1.22401 0.86944 0.92576 0.99048 1.87513 1.51020 1.55478 1.34624 1.68030 1.08554 1.33215 1.12683 0.88336 0.86272 0.91003 0.77852 0.76589 0.74652 0.91276 0.91528 0.90201 0.95465 0.94028 0.94638 0.94929 0.90302 0.92648 0.89745 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.22 71.24 0.73 -0.37 16 2 C 0.15 2.82 6.82 42.66 0.29 3.11 16 3 C -0.18 -2.17 9.87 22.54 0.22 -1.95 16 4 C 0.14 2.17 11.30 84.78 0.96 3.13 16 5 N -0.51 -13.47 9.57 -189.10 -1.81 -15.29 16 6 C 0.27 8.67 7.60 137.68 1.05 9.71 16 7 C 0.57 22.20 7.85 86.99 0.68 22.88 16 8 O -0.55 -24.99 16.86 -3.62 -0.06 -25.05 16 9 N -0.68 -25.12 5.42 -465.30 -2.52 -27.65 16 10 C 0.13 5.19 5.24 86.38 0.45 5.64 16 11 C 0.08 3.42 1.95 28.71 0.06 3.48 16 12 H 0.08 4.06 5.23 -2.39 -0.01 4.04 16 13 C 0.14 6.77 4.71 83.79 0.39 7.16 16 14 N -0.60 -29.25 2.61 -706.01 -1.84 -31.09 16 15 C -0.26 -13.84 9.61 84.03 0.81 -13.04 16 16 H 0.06 3.37 7.87 -2.91 -0.02 3.35 16 17 C -0.04 -1.97 4.92 84.86 0.42 -1.55 16 18 N -0.92 -49.38 9.56 21.65 0.21 -49.17 16 19 Si 0.96 43.61 29.60 68.60 2.03 45.64 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 C 0.15 6.41 5.33 87.75 0.47 6.88 16 24 C -0.16 -5.89 6.75 32.15 0.22 -5.67 16 25 C 0.07 2.50 6.38 72.74 0.46 2.97 16 26 O -0.37 -14.52 9.54 -137.14 -1.31 -15.83 16 27 N -0.51 -15.38 10.07 -177.25 -1.78 -17.16 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.12 0.38 8.10 -2.39 -0.02 0.36 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.20 0.25 8.06 -2.91 -0.02 0.23 16 32 H 0.22 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.42 14.39 7.63 -92.71 -0.71 13.69 16 34 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.62 16 36 H 0.08 4.13 6.02 -2.39 -0.01 4.12 16 37 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 39 H 0.04 1.44 7.99 -2.38 -0.02 1.42 16 40 H 0.03 1.34 7.95 -2.39 -0.02 1.32 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.04 1.55 6.66 -2.39 -0.02 1.53 16 Total: -1.00 -71.05 360.12 0.43 -70.62 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.32 Total: 22.61 kcal Atomic # 6 Polarization: 35.17 SS G_CDS: 7.21 Total: 42.37 kcal Atomic # 7 Polarization: -132.61 SS G_CDS: -7.75 Total: -140.36 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.37 Total: -40.89 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -71.05 0.43 -70.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073589562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.521 kcal (2) G-P(sol) polarization free energy of solvation -71.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds