Wall clock time and date at job start Tue Mar 31 2020 12:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38573 * 119.96536 * 2 1 4 4 C 1.38822 * 118.06435 * 179.74553 * 3 2 1 5 5 C 1.39714 * 117.90020 * 0.53297 * 4 3 2 6 6 C 1.48159 * 120.18284 * 179.73656 * 5 4 3 7 7 O 1.21508 * 119.99851 * 359.72088 * 6 5 4 8 8 N 1.34780 * 119.99696 * 179.72428 * 6 5 4 9 9 C 1.46507 * 119.99731 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47202 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.46283 * 304.99132 * 10 9 8 12 12 C 1.54796 * 109.46909 * 185.00044 * 10 9 8 13 13 N 1.45126 * 109.52992 * 172.10535 * 12 10 9 14 14 C 1.36932 * 118.75419 * 269.29048 * 13 12 10 15 15 H 1.07999 * 119.99965 * 26.66452 * 14 13 12 16 16 C 1.38814 * 119.99858 * 206.66111 * 14 13 12 17 17 N 1.31622 * 119.99793 * 16.65807 * 16 14 13 18 18 Si 1.86798 * 120.00027 * 196.65245 * 16 14 13 19 19 H 1.48496 * 109.47263 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47245 * 300.00294 * 18 16 14 21 21 H 1.48505 * 109.47012 * 60.00303 * 18 16 14 22 22 C 1.47499 * 122.48329 * 89.57046 * 13 12 10 23 23 C 1.53949 * 110.82317 * 317.97222 * 22 13 12 24 24 C 1.51537 * 109.72755 * 320.31040 * 23 22 13 25 25 O 1.38016 * 109.46599 * 64.98326 * 10 9 8 26 26 N 1.32782 * 119.63749 * 359.45775 * 5 4 3 27 27 N 1.28349 * 122.02609 * 0.28253 * 26 5 4 28 28 H 1.08999 * 109.47352 * 269.97776 * 1 2 3 29 29 H 1.09005 * 109.47263 * 29.98012 * 1 2 3 30 30 H 1.09005 * 109.47062 * 149.97520 * 1 2 3 31 31 H 1.07995 * 120.96783 * 0.02562 * 3 2 1 32 32 H 1.08001 * 121.05005 * 180.28440 * 4 3 2 33 33 H 0.96992 * 120.00346 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.46771 * 59.99778 * 9 8 6 35 35 H 1.09004 * 109.46896 * 299.99937 * 9 8 6 36 36 H 1.09005 * 109.46492 * 52.08648 * 12 10 9 37 37 H 1.08999 * 109.46009 * 292.12417 * 12 10 9 38 38 H 0.97002 * 119.99641 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.17529 * 78.49713 * 22 13 12 40 40 H 1.09007 * 109.16444 * 197.69407 * 22 13 12 41 41 H 1.08996 * 109.46056 * 200.18150 * 23 22 13 42 42 H 1.09000 * 109.29615 * 80.33895 * 23 22 13 43 43 H 1.09003 * 109.58550 * 331.50860 * 24 23 22 44 44 H 1.09000 * 109.58890 * 211.07311 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1544 0.0054 5 6 4.1991 -0.1013 -0.0009 6 6 5.6767 -0.2093 -0.0014 7 8 6.3593 0.7959 -0.0014 8 7 6.2636 -1.4226 -0.0019 9 6 7.7248 -1.5295 -0.0030 10 6 8.1283 -3.0053 -0.0028 11 1 7.6562 -3.5107 0.8398 12 6 9.6668 -3.1195 0.1233 13 7 10.0363 -4.5103 0.3112 14 6 10.1311 -5.0002 1.5864 15 1 9.5524 -4.5530 2.3811 16 6 10.9709 -6.0717 1.8576 17 7 11.9080 -6.4077 0.9966 18 14 10.7712 -7.0366 3.4446 19 1 11.7831 -8.1222 3.4946 20 1 10.9627 -6.1282 4.6037 21 1 9.4091 -7.6261 3.4974 22 6 10.3194 -5.4145 -0.8193 23 6 9.3030 -5.2039 -1.9562 24 6 7.9209 -4.9883 -1.3733 25 8 7.7178 -3.5945 -1.1814 26 7 3.4496 -1.1974 -0.0009 27 7 2.1672 -1.1451 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6744 2.1444 0.0004 32 1 4.1740 2.0607 0.0103 33 1 5.7187 -2.2250 -0.0016 34 1 8.1252 -1.0435 0.8868 35 1 8.1240 -1.0434 -0.8933 36 1 10.0056 -2.5350 0.9788 37 1 10.1348 -2.7389 -0.7845 38 1 12.4951 -7.1562 1.1864 39 1 11.3246 -5.2177 -1.1920 40 1 10.2623 -6.4470 -0.4747 41 1 9.2921 -6.0827 -2.6009 42 1 9.5913 -4.3296 -2.5398 43 1 7.8435 -5.5042 -0.4162 44 1 7.1696 -5.3757 -2.0615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073599713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:55 Heat of formation + Delta-G solvation = 1.438687 kcal Electronic energy + Delta-G solvation = -26757.807249 eV Core-core repulsion = 22904.672182 eV Total energy + Delta-G solvation = -3853.135067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49905 -39.58633 -38.70473 -35.30643 -34.77434 -34.34636 -33.39404 -32.10630 -31.48287 -29.35262 -28.20510 -25.84177 -25.43583 -25.05334 -23.66578 -22.63274 -21.07512 -20.75241 -19.57859 -18.45335 -17.76772 -16.96741 -16.20692 -16.04566 -15.87177 -15.75224 -15.32436 -15.00985 -14.73437 -14.63844 -14.14450 -13.69309 -13.66109 -13.38600 -13.34010 -12.97902 -12.84168 -12.70305 -12.26415 -12.08762 -11.80639 -11.39109 -11.20672 -10.96227 -10.86888 -10.65948 -10.65294 -10.29981 -10.18142 -10.09886 -10.07091 -9.86417 -9.73979 -9.68883 -9.01546 -8.80559 -8.42662 -6.75671 -5.84500 -3.29121 0.13307 0.40218 2.47013 2.93073 3.35136 3.38529 3.41232 3.42374 3.54102 3.98344 4.15700 4.18628 4.33166 4.44944 4.56549 4.66663 4.98948 5.05216 5.18052 5.29503 5.35525 5.41157 5.53248 5.58313 5.61690 5.71591 5.77113 5.87022 5.97875 6.02580 6.17114 6.26307 6.35403 6.46043 6.56264 6.72442 6.74923 6.82542 7.34218 7.45583 7.62113 7.76635 8.04822 8.23388 8.25787 8.39172 9.16675 9.81516 10.27952 11.23076 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.002680 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.926059 B =10447.192695 C =10704.139872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.080 3.920 3 C -0.125 4.125 4 C -0.062 4.062 5 C 0.022 3.978 6 C 0.571 3.429 7 O -0.535 6.535 8 N -0.693 5.693 9 C 0.130 3.870 10 C 0.066 3.934 11 H 0.054 0.946 12 C 0.129 3.871 13 N -0.591 5.591 14 C -0.267 4.267 15 H 0.066 0.934 16 C 0.008 3.992 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.290 1.290 20 H -0.282 1.282 21 H -0.283 1.283 22 C 0.177 3.823 23 C -0.176 4.176 24 C 0.088 3.912 25 O -0.395 6.395 26 N -0.203 5.203 27 N -0.241 5.241 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.415 0.585 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.255 0.745 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.877 13.022 -3.997 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.063 4.063 3 C -0.153 4.153 4 C -0.091 4.091 5 C -0.125 4.125 6 C 0.354 3.646 7 O -0.412 6.412 8 N -0.343 5.343 9 C 0.006 3.994 10 C 0.004 3.996 11 H 0.072 0.928 12 C -0.001 4.001 13 N -0.312 5.312 14 C -0.397 4.397 15 H 0.084 0.916 16 C -0.191 4.191 17 N -0.545 5.545 18 Si 0.731 3.269 19 H -0.216 1.216 20 H -0.208 1.208 21 H -0.210 1.210 22 C 0.052 3.948 23 C -0.216 4.216 24 C 0.012 3.988 25 O -0.315 6.315 26 N -0.049 5.049 27 N -0.085 5.085 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.251 0.749 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.282 12.008 -4.134 23.089 hybrid contribution -0.006 0.408 1.022 1.101 sum -19.288 12.416 -3.112 23.149 Atomic orbital electron populations 1.20744 0.87039 1.04401 1.03952 1.23126 0.99420 0.90538 0.93186 1.22316 0.94252 1.00142 0.98634 1.22464 0.95044 0.99266 0.92369 1.22918 0.96669 0.92009 1.00877 1.17542 0.85046 0.84305 0.77738 1.90795 1.63480 1.36101 1.50796 1.45892 1.08716 1.08083 1.71651 1.21574 0.78317 0.96498 1.02993 1.22635 0.99166 0.90295 0.87509 0.92849 1.21403 0.91195 0.87793 0.99694 1.43826 1.79751 1.04422 1.03184 1.19169 1.19938 1.14264 0.86326 0.91632 1.25044 0.95388 1.00936 0.97756 1.70069 1.18374 1.29339 1.36701 0.86386 0.77370 0.79793 0.83313 1.21601 1.20814 1.20952 1.21059 0.93413 0.95376 0.84928 1.22829 0.97569 1.00874 1.00289 1.22010 0.95723 0.80717 1.00301 1.86076 1.82427 1.24126 1.38834 1.73253 0.99720 1.26126 1.05799 1.73127 1.00946 1.24529 1.09945 0.89439 0.89978 0.89579 0.82536 0.81892 0.74891 0.89738 0.90482 0.92575 0.93770 0.93501 0.95367 0.90830 0.92107 0.92391 0.91985 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.19 36.00 0.37 -0.11 16 2 C 0.08 0.68 6.87 -82.32 -0.57 0.11 16 3 C -0.12 -0.88 9.86 -39.24 -0.39 -1.26 16 4 C -0.06 -0.59 9.73 -38.81 -0.38 -0.97 16 5 C 0.02 0.28 6.83 -82.83 -0.57 -0.29 16 6 C 0.57 8.37 7.82 -12.18 -0.10 8.27 16 7 O -0.54 -8.90 16.39 5.36 0.09 -8.81 16 8 N -0.69 -10.17 5.48 -61.14 -0.34 -10.51 16 9 C 0.13 2.00 5.34 -4.04 -0.02 1.98 16 10 C 0.07 1.17 2.68 -25.79 -0.07 1.10 16 11 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 12 C 0.13 2.63 5.12 -3.83 -0.02 2.61 16 13 N -0.59 -14.29 2.21 -171.80 -0.38 -14.67 16 14 C -0.27 -7.10 9.45 -15.06 -0.14 -7.25 16 15 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 16 C 0.01 0.22 4.85 -17.43 -0.08 0.13 16 17 N -0.90 -25.65 11.10 55.49 0.62 -25.03 16 18 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.18 4.15 4.75 -3.00 -0.01 4.14 16 23 C -0.18 -3.33 5.79 -26.98 -0.16 -3.49 16 24 C 0.09 1.59 6.38 36.42 0.23 1.83 16 25 O -0.40 -7.16 9.38 -26.54 -0.25 -7.41 16 26 N -0.20 -2.73 10.75 33.32 0.36 -2.37 16 27 N -0.24 -2.92 11.43 33.63 0.38 -2.53 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.19 8.09 -51.93 -0.42 -0.23 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 32 H 0.16 1.31 7.72 -52.49 -0.41 0.91 16 33 H 0.41 5.96 7.81 -40.82 -0.32 5.64 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.14 7.98 -51.93 -0.41 0.73 16 37 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.03 0.72 8.03 -51.93 -0.42 0.30 16 40 H 0.07 1.90 6.43 -51.92 -0.33 1.57 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 43 H 0.06 1.24 7.41 -51.93 -0.38 0.86 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -31.90 364.14 -7.42 -39.32 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.46 Total: 3.36 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -1.90 Total: 6.81 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.64 Total: -55.11 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.16 Total: -16.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.90 -7.42 -39.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073599713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.763 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds