Wall clock time and date at job start Tue Mar 31 2020 12:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38573 * 119.96536 * 2 1 4 4 C 1.38822 * 118.06435 * 179.74553 * 3 2 1 5 5 C 1.39714 * 117.90020 * 0.53297 * 4 3 2 6 6 C 1.48159 * 120.18284 * 179.73656 * 5 4 3 7 7 O 1.21508 * 119.99851 * 359.72088 * 6 5 4 8 8 N 1.34780 * 119.99696 * 179.72428 * 6 5 4 9 9 C 1.46507 * 119.99731 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47202 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.46283 * 304.99132 * 10 9 8 12 12 C 1.54796 * 109.46909 * 185.00044 * 10 9 8 13 13 N 1.45126 * 109.52992 * 172.10535 * 12 10 9 14 14 C 1.36932 * 118.75419 * 269.29048 * 13 12 10 15 15 H 1.07999 * 119.99965 * 26.66452 * 14 13 12 16 16 C 1.38814 * 119.99858 * 206.66111 * 14 13 12 17 17 N 1.31622 * 119.99793 * 16.65807 * 16 14 13 18 18 Si 1.86798 * 120.00027 * 196.65245 * 16 14 13 19 19 H 1.48496 * 109.47263 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47245 * 300.00294 * 18 16 14 21 21 H 1.48505 * 109.47012 * 60.00303 * 18 16 14 22 22 C 1.47499 * 122.48329 * 89.57046 * 13 12 10 23 23 C 1.53949 * 110.82317 * 317.97222 * 22 13 12 24 24 C 1.51537 * 109.72755 * 320.31040 * 23 22 13 25 25 O 1.38016 * 109.46599 * 64.98326 * 10 9 8 26 26 N 1.32782 * 119.63749 * 359.45775 * 5 4 3 27 27 N 1.28349 * 122.02609 * 0.28253 * 26 5 4 28 28 H 1.08999 * 109.47352 * 269.97776 * 1 2 3 29 29 H 1.09005 * 109.47263 * 29.98012 * 1 2 3 30 30 H 1.09005 * 109.47062 * 149.97520 * 1 2 3 31 31 H 1.07995 * 120.96783 * 0.02562 * 3 2 1 32 32 H 1.08001 * 121.05005 * 180.28440 * 4 3 2 33 33 H 0.96992 * 120.00346 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.46771 * 59.99778 * 9 8 6 35 35 H 1.09004 * 109.46896 * 299.99937 * 9 8 6 36 36 H 1.09005 * 109.46492 * 52.08648 * 12 10 9 37 37 H 1.08999 * 109.46009 * 292.12417 * 12 10 9 38 38 H 0.97002 * 119.99641 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.17529 * 78.49713 * 22 13 12 40 40 H 1.09007 * 109.16444 * 197.69407 * 22 13 12 41 41 H 1.08996 * 109.46056 * 200.18150 * 23 22 13 42 42 H 1.09000 * 109.29615 * 80.33895 * 23 22 13 43 43 H 1.09003 * 109.58550 * 331.50860 * 24 23 22 44 44 H 1.09000 * 109.58890 * 211.07311 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1544 0.0054 5 6 4.1991 -0.1013 -0.0009 6 6 5.6767 -0.2093 -0.0014 7 8 6.3593 0.7959 -0.0014 8 7 6.2636 -1.4226 -0.0019 9 6 7.7248 -1.5295 -0.0030 10 6 8.1283 -3.0053 -0.0028 11 1 7.6562 -3.5107 0.8398 12 6 9.6668 -3.1195 0.1233 13 7 10.0363 -4.5103 0.3112 14 6 10.1311 -5.0002 1.5864 15 1 9.5524 -4.5530 2.3811 16 6 10.9709 -6.0717 1.8576 17 7 11.9080 -6.4077 0.9966 18 14 10.7712 -7.0366 3.4446 19 1 11.7831 -8.1222 3.4946 20 1 10.9627 -6.1282 4.6037 21 1 9.4091 -7.6261 3.4974 22 6 10.3194 -5.4145 -0.8193 23 6 9.3030 -5.2039 -1.9562 24 6 7.9209 -4.9883 -1.3733 25 8 7.7178 -3.5945 -1.1814 26 7 3.4496 -1.1974 -0.0009 27 7 2.1672 -1.1451 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6744 2.1444 0.0004 32 1 4.1740 2.0607 0.0103 33 1 5.7187 -2.2250 -0.0016 34 1 8.1252 -1.0435 0.8868 35 1 8.1240 -1.0434 -0.8933 36 1 10.0056 -2.5350 0.9788 37 1 10.1348 -2.7389 -0.7845 38 1 12.4951 -7.1562 1.1864 39 1 11.3246 -5.2177 -1.1920 40 1 10.2623 -6.4470 -0.4747 41 1 9.2921 -6.0827 -2.6009 42 1 9.5913 -4.3296 -2.5398 43 1 7.8435 -5.5042 -0.4162 44 1 7.1696 -5.3757 -2.0615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073599713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:54 Heat of formation + Delta-G solvation = -20.789207 kcal Electronic energy + Delta-G solvation = -26758.771123 eV Core-core repulsion = 22904.672182 eV Total energy + Delta-G solvation = -3854.098941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30038 -40.85641 -40.10425 -37.02422 -36.10095 -35.08969 -34.16209 -33.62615 -33.40722 -30.49726 -29.28861 -27.34421 -27.07136 -26.11742 -24.73259 -23.88211 -22.33605 -22.09309 -21.34395 -19.50854 -18.88713 -18.54305 -17.66026 -17.25471 -16.95007 -16.73085 -16.60401 -16.44952 -16.11671 -15.74705 -15.52285 -15.29877 -14.76331 -14.53468 -14.35425 -14.18708 -13.89936 -13.71715 -13.57382 -13.20260 -13.13978 -13.02461 -12.75196 -12.59597 -12.52294 -12.43258 -12.11269 -11.77684 -11.49380 -11.35372 -11.35133 -11.30678 -10.84672 -10.82997 -10.54931 -10.29333 -10.21065 -8.73559 -7.90748 -5.37793 -0.64392 -0.28519 1.45220 1.47064 1.50584 1.53778 1.86677 2.48457 2.52565 2.70598 2.77091 3.23918 3.31506 3.50785 3.55615 3.69846 3.85650 3.99110 4.02857 4.12087 4.19327 4.33818 4.50992 4.55812 4.56929 4.62723 4.68857 4.73543 4.78029 4.80576 4.89394 4.96770 5.02871 5.12460 5.16510 5.21438 5.27043 5.31747 5.45306 5.60287 5.73058 6.30232 6.34995 6.72557 6.91564 7.13082 7.47117 7.85300 8.26731 9.14873 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.002680 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.926059 B =10447.192695 C =10704.139872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.080 3.920 3 C -0.103 4.103 4 C -0.069 4.069 5 C 0.000 4.000 6 C 0.573 3.427 7 O -0.560 6.560 8 N -0.694 5.694 9 C 0.140 3.860 10 C 0.084 3.916 11 H 0.042 0.958 12 C 0.125 3.875 13 N -0.605 5.605 14 C -0.272 4.272 15 H 0.066 0.934 16 C -0.044 4.044 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.294 1.294 20 H -0.276 1.276 21 H -0.278 1.278 22 C 0.185 3.815 23 C -0.163 4.163 24 C 0.091 3.909 25 O -0.394 6.394 26 N -0.231 5.231 27 N -0.276 5.276 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.206 0.794 32 H 0.176 0.824 33 H 0.416 0.584 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.250 0.750 39 H -0.003 1.003 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.952 14.736 -4.166 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.063 4.063 3 C -0.131 4.131 4 C -0.097 4.097 5 C -0.147 4.147 6 C 0.357 3.643 7 O -0.438 6.438 8 N -0.344 5.344 9 C 0.016 3.984 10 C 0.022 3.978 11 H 0.060 0.940 12 C -0.003 4.003 13 N -0.327 5.327 14 C -0.402 4.402 15 H 0.084 0.916 16 C -0.240 4.240 17 N -0.578 5.578 18 Si 0.792 3.208 19 H -0.220 1.220 20 H -0.202 1.202 21 H -0.204 1.204 22 C 0.060 3.940 23 C -0.202 4.202 24 C 0.015 3.985 25 O -0.313 6.313 26 N -0.077 5.077 27 N -0.120 5.120 28 H 0.120 0.880 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.223 0.777 32 H 0.193 0.807 33 H 0.253 0.747 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.394 13.737 -4.308 26.623 hybrid contribution 0.847 -0.033 1.053 1.352 sum -21.547 13.704 -3.255 25.742 Atomic orbital electron populations 1.20922 0.84124 1.05746 1.05172 1.23821 1.01253 0.90097 0.91124 1.22834 0.93089 1.01560 0.95647 1.22709 0.96446 0.98369 0.92204 1.22710 0.95300 0.93465 1.03186 1.17829 0.86109 0.83621 0.76715 1.90768 1.64387 1.36662 1.51983 1.45823 1.08169 1.08497 1.71880 1.21376 0.79186 0.94586 1.03274 1.22326 0.96669 0.91611 0.87170 0.94013 1.21546 0.93114 0.85952 0.99691 1.44029 1.80056 1.05927 1.02717 1.19456 1.19204 1.14192 0.87382 0.91591 1.25758 0.95386 1.02054 1.00767 1.70223 1.19361 1.29758 1.38469 0.85407 0.77152 0.78272 0.80007 1.22022 1.20218 1.20381 1.20845 0.93419 0.93696 0.86015 1.22675 0.96653 1.02195 0.98649 1.22068 0.96064 0.80457 0.99905 1.86103 1.82156 1.24261 1.38742 1.73156 1.00634 1.26922 1.06967 1.73048 1.00474 1.26805 1.11673 0.88032 0.86773 0.90125 0.77713 0.80673 0.74724 0.89259 0.90464 0.92769 0.93532 0.94053 0.98510 0.93761 0.89662 0.91945 0.94238 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.19 71.24 0.73 0.15 16 2 C 0.08 1.14 6.87 42.59 0.29 1.43 16 3 C -0.10 -1.07 9.86 22.49 0.22 -0.85 16 4 C -0.07 -1.17 9.73 22.77 0.22 -0.94 16 5 C 0.00 0.01 6.83 41.99 0.29 0.29 16 6 C 0.57 16.69 7.82 86.88 0.68 17.37 16 7 O -0.56 -18.44 16.39 -3.74 -0.06 -18.51 16 8 N -0.69 -20.27 5.48 -465.65 -2.55 -22.82 16 9 C 0.14 4.27 5.34 86.38 0.46 4.74 16 10 C 0.08 2.97 2.68 31.21 0.08 3.05 16 11 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 12 C 0.12 5.17 5.12 87.25 0.45 5.62 16 13 N -0.61 -29.94 2.21 -697.45 -1.54 -31.48 16 14 C -0.27 -14.74 9.45 84.03 0.79 -13.95 16 15 H 0.07 3.49 7.88 -2.91 -0.02 3.47 16 16 C -0.04 -2.42 4.85 84.86 0.41 -2.01 16 17 N -0.93 -54.77 11.10 21.65 0.24 -54.53 16 18 Si 0.96 44.68 29.59 68.60 2.03 46.71 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 C 0.19 8.92 4.75 86.51 0.41 9.33 16 23 C -0.16 -6.02 5.79 30.44 0.18 -5.85 16 24 C 0.09 3.17 6.38 71.50 0.46 3.62 16 25 O -0.39 -13.87 9.38 -117.87 -1.11 -14.98 16 26 N -0.23 -6.16 10.75 -48.49 -0.52 -6.68 16 27 N -0.28 -6.41 11.43 -47.53 -0.54 -6.96 16 28 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.11 -0.06 8.09 -2.38 -0.02 -0.07 16 30 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.21 0.08 8.06 -2.91 -0.02 0.05 16 32 H 0.18 2.45 7.72 -2.91 -0.02 2.43 16 33 H 0.42 11.99 7.81 -92.71 -0.72 11.26 16 34 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 35 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.05 2.24 7.98 -2.38 -0.02 2.22 16 37 H 0.05 1.89 8.11 -2.39 -0.02 1.87 16 38 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.00 -0.17 8.03 -2.39 -0.02 -0.19 16 40 H 0.04 2.37 6.43 -2.38 -0.02 2.35 16 41 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.06 2.27 8.01 -2.39 -0.02 2.25 16 43 H 0.04 1.57 7.41 -2.39 -0.02 1.55 16 44 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -71.81 364.14 1.90 -69.91 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.29 Total: 17.31 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 5.67 Total: 22.01 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -4.92 Total: -122.47 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -1.17 Total: -33.48 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -71.81 1.90 -69.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073599713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.120 kcal (2) G-P(sol) polarization free energy of solvation -71.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds