Wall clock time and date at job start Tue Mar 31 2020 12:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31932 * 120.16463 * 2 1 4 4 N 1.28283 * 122.31846 * 179.97438 * 3 2 1 5 5 C 1.31914 * 122.52065 * 0.02562 * 4 3 2 6 6 C 1.38508 * 119.96824 * 359.97438 * 5 4 3 7 7 C 1.39719 * 120.17702 * 179.97438 * 2 1 3 8 8 C 1.48133 * 121.14638 * 0.02562 * 7 2 1 9 9 O 1.21523 * 119.99761 * 6.34423 * 8 7 2 10 10 N 1.34775 * 120.00496 * 186.33884 * 8 7 2 11 11 C 1.46500 * 120.00191 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46936 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.46965 * 305.00628 * 12 11 10 14 14 C 1.54806 * 109.47029 * 185.01076 * 12 11 10 15 15 N 1.45122 * 109.53942 * 172.11081 * 14 12 11 16 16 C 1.36934 * 118.75503 * 269.28539 * 15 14 12 17 17 H 1.07999 * 120.00223 * 26.85934 * 16 15 14 18 18 C 1.38812 * 119.99644 * 206.84943 * 16 15 14 19 19 N 1.31618 * 120.00130 * 15.99728 * 18 16 15 20 20 Si 1.86806 * 119.99727 * 196.00178 * 18 16 15 21 21 H 1.48500 * 109.47220 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47036 * 119.99961 * 20 18 16 23 23 H 1.48499 * 109.46846 * 240.00010 * 20 18 16 24 24 C 1.47508 * 122.48394 * 89.29153 * 15 14 12 25 25 C 1.53578 * 111.02324 * 318.37143 * 24 15 14 26 26 C 1.51532 * 109.58487 * 320.01951 * 25 24 15 27 27 O 1.38014 * 109.46985 * 65.00052 * 12 11 10 28 28 H 1.09001 * 109.47455 * 96.91178 * 1 2 3 29 29 H 1.09002 * 109.46366 * 216.90913 * 1 2 3 30 30 H 1.08991 * 109.47557 * 336.90896 * 1 2 3 31 31 H 1.08001 * 120.01339 * 180.02562 * 5 4 3 32 32 H 1.07995 * 121.08698 * 179.72029 * 6 5 4 33 33 H 0.97001 * 119.99899 * 0.02562 * 10 8 7 34 34 H 1.08994 * 109.47153 * 299.99834 * 11 10 8 35 35 H 1.08997 * 109.46974 * 60.00177 * 11 10 8 36 36 H 1.09001 * 109.46021 * 292.13598 * 14 12 11 37 37 H 1.09001 * 109.46069 * 52.08500 * 14 12 11 38 38 H 0.97003 * 119.99765 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.16538 * 197.97436 * 24 15 14 40 40 H 1.09002 * 109.12563 * 78.73758 * 24 15 14 41 41 H 1.09004 * 109.44971 * 199.98769 * 25 24 15 42 42 H 1.09003 * 109.45056 * 80.05934 * 25 24 15 43 43 H 1.09003 * 109.58586 * 331.62542 * 26 25 24 44 44 H 1.08996 * 109.59300 * 211.18692 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1699 1.1407 0.0000 4 7 3.4519 1.1889 0.0005 5 6 4.2023 0.1040 0.0005 6 6 3.6092 -1.1476 0.0006 7 6 2.2093 -1.2078 0.0005 8 6 1.4985 -2.5075 0.0006 9 8 0.2893 -2.5386 -0.1162 10 7 2.1927 -3.6554 0.1299 11 6 1.4897 -4.9407 0.1294 12 6 2.5028 -6.0761 0.2888 13 1 3.2632 -5.9962 -0.4880 14 6 1.7765 -7.4373 0.1617 15 7 2.7552 -8.5082 0.1256 16 6 3.2378 -8.9190 -1.0883 17 1 3.2592 -8.2321 -1.9214 18 6 3.6995 -10.2183 -1.2479 19 7 3.3946 -11.1391 -0.3582 20 14 4.7539 -10.6598 -2.7254 21 1 4.9512 -9.4549 -3.5706 22 1 6.0725 -11.1604 -2.2607 23 1 4.0756 -11.7154 -3.5197 24 6 3.2498 -9.1710 1.3471 25 6 3.5089 -8.1478 2.4627 26 6 4.1356 -6.9007 1.8725 27 8 3.1013 -5.9879 1.5292 28 1 -0.3634 -0.1237 -1.0202 29 1 -0.3632 -0.8218 0.6172 30 1 -0.3634 0.9452 0.4030 31 1 5.2788 0.1918 0.0014 32 1 4.2061 -2.0476 -0.0039 33 1 3.1579 -3.6306 0.2234 34 1 0.7805 -4.9673 0.9566 35 1 0.9543 -5.0615 -0.8123 36 1 1.1159 -7.5777 1.0173 37 1 1.1890 -7.4511 -0.7563 38 1 3.7170 -12.0471 -0.4700 39 1 4.1780 -9.6948 1.1192 40 1 2.5066 -9.8917 1.6882 41 1 4.1850 -8.5792 3.2010 42 1 2.5656 -7.8876 2.9430 43 1 4.7019 -7.1640 0.9792 44 1 4.7987 -6.4425 2.6063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073678947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:04 Heat of formation + Delta-G solvation = 6.008567 kcal Electronic energy + Delta-G solvation = -27084.727233 eV Core-core repulsion = 23231.790331 eV Total energy + Delta-G solvation = -3852.936902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58796 -39.74942 -38.87094 -35.51237 -34.97308 -33.98582 -33.63002 -32.16536 -31.57738 -29.10987 -28.23179 -26.27079 -25.59909 -25.03857 -23.40818 -22.77867 -21.18667 -20.82943 -19.66965 -18.38698 -17.95963 -17.06564 -16.34768 -16.06416 -15.97964 -15.78290 -15.59217 -15.23556 -14.76788 -14.71844 -14.24412 -13.81469 -13.70467 -13.52032 -13.17205 -13.04314 -12.82254 -12.49709 -12.33178 -12.19455 -11.51904 -11.33459 -11.29180 -11.09040 -10.97249 -10.73705 -10.61239 -10.59967 -10.32116 -10.07055 -9.97492 -9.87861 -9.80465 -9.71860 -9.18513 -8.94863 -8.53322 -6.84980 -5.93411 -3.39168 -0.00737 0.51617 2.52845 2.81635 3.26255 3.29016 3.35069 3.36231 3.67716 3.98604 3.99906 4.05205 4.29446 4.36370 4.44340 4.90836 5.04630 5.09562 5.23529 5.26356 5.40113 5.47222 5.49165 5.57757 5.61997 5.73503 5.77880 5.83856 5.86973 6.03826 6.05892 6.14773 6.23754 6.31897 6.43648 6.59980 6.63759 6.71327 7.24440 7.24736 7.53241 7.67841 7.90102 8.07166 8.29911 8.32247 9.07433 9.71958 10.18263 11.14137 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.002804 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.382611 B = 9982.714115 C =10178.019626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.124 3.876 3 N -0.248 5.248 4 N -0.225 5.225 5 C 0.028 3.972 6 C -0.080 4.080 7 C -0.131 4.131 8 C 0.558 3.442 9 O -0.522 6.522 10 N -0.707 5.707 11 C 0.132 3.868 12 C 0.065 3.935 13 H 0.053 0.947 14 C 0.128 3.872 15 N -0.591 5.591 16 C -0.269 4.269 17 H 0.067 0.933 18 C 0.009 3.991 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.177 3.823 25 C -0.177 4.177 26 C 0.088 3.912 27 O -0.397 6.397 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.179 0.821 32 H 0.156 0.844 33 H 0.402 0.598 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.255 0.745 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.109 16.461 3.187 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.020 4.020 3 N -0.091 5.091 4 N -0.067 5.067 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.145 4.145 8 C 0.342 3.658 9 O -0.399 6.399 10 N -0.358 5.358 11 C 0.008 3.992 12 C 0.003 3.997 13 H 0.070 0.930 14 C -0.001 4.001 15 N -0.312 5.312 16 C -0.398 4.398 17 H 0.084 0.916 18 C -0.191 4.191 19 N -0.543 5.543 20 Si 0.731 3.269 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.052 3.948 25 C -0.216 4.216 26 C 0.012 3.988 27 O -0.316 6.316 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.174 0.826 33 H 0.238 0.762 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.151 17.964 3.241 18.254 hybrid contribution 1.495 -2.328 -0.887 2.905 sum 1.645 15.636 2.354 15.897 Atomic orbital electron populations 1.20980 0.86173 1.04424 1.04770 1.23179 0.99774 0.88523 0.90546 1.73103 1.01479 1.24070 1.10424 1.72867 0.99710 1.27882 1.06200 1.24305 1.02840 0.89194 0.97281 1.22734 0.94144 1.00588 0.93510 1.21159 0.94536 0.95878 1.02973 1.17856 0.87014 0.83154 0.77733 1.90764 1.13119 1.86826 1.49196 1.45912 1.11316 1.05911 1.72659 1.21551 0.94892 0.79831 1.02890 1.22654 0.94961 0.96156 0.85924 0.92964 1.21395 0.91431 0.87218 1.00076 1.43831 1.45530 1.38551 1.03269 1.19230 1.36991 0.94133 0.89486 0.91567 1.25066 1.00784 0.95355 0.97854 1.70078 1.46021 1.01650 1.36574 0.86254 0.80193 0.78207 0.82276 1.20228 1.21464 1.21568 1.20989 0.99584 0.90872 0.83380 1.22766 1.00635 0.97975 1.00191 1.22026 0.88567 0.89104 0.99097 1.86067 1.53412 1.57383 1.34780 0.89279 0.87695 0.90584 0.80366 0.82636 0.76247 0.90413 0.89674 0.93734 0.92523 0.93528 0.90812 0.95347 0.92043 0.92321 0.91987 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 8.94 36.01 0.32 -0.76 16 2 C 0.12 1.44 6.91 -82.00 -0.57 0.88 16 3 N -0.25 -3.13 11.42 33.81 0.39 -2.74 16 4 N -0.22 -2.62 11.48 30.53 0.35 -2.27 16 5 C 0.03 0.23 11.30 -17.42 -0.20 0.03 16 6 C -0.08 -0.65 9.68 -38.78 -0.38 -1.02 16 7 C -0.13 -1.41 5.92 -104.58 -0.62 -2.03 16 8 C 0.56 6.82 7.73 -12.20 -0.09 6.72 16 9 O -0.52 -7.61 13.55 5.35 0.07 -7.54 16 10 N -0.71 -8.10 5.45 -61.16 -0.33 -8.44 16 11 C 0.13 1.75 5.34 -4.04 -0.02 1.73 16 12 C 0.07 1.02 2.68 -25.78 -0.07 0.95 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.13 2.45 5.12 -3.83 -0.02 2.43 16 15 N -0.59 -13.53 2.22 -172.02 -0.38 -13.91 16 16 C -0.27 -6.82 9.45 -15.06 -0.14 -6.96 16 17 H 0.07 1.65 7.88 -52.49 -0.41 1.24 16 18 C 0.01 0.23 4.87 -17.43 -0.08 0.15 16 19 N -0.90 -24.81 11.08 55.49 0.62 -24.19 16 20 Si 0.90 20.56 29.58 -169.99 -5.03 15.53 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.18 3.93 4.70 -3.19 -0.02 3.92 16 25 C -0.18 -3.09 5.78 -27.17 -0.16 -3.25 16 26 C 0.09 1.41 6.38 36.42 0.23 1.65 16 27 O -0.40 -6.31 9.38 -26.53 -0.25 -6.56 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.17 5.99 -51.93 -0.31 0.86 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.16 0.80 6.66 -52.49 -0.35 0.45 16 33 H 0.40 3.84 6.69 -40.82 -0.27 3.57 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.85 8.11 -51.93 -0.42 0.42 16 37 H 0.06 1.08 7.98 -51.93 -0.41 0.67 16 38 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.07 1.82 6.44 -51.93 -0.33 1.49 16 40 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.03 8.01 -51.93 -0.42 0.61 16 43 H 0.06 1.12 7.40 -51.93 -0.38 0.73 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -30.58 356.85 -7.25 -37.83 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.25 Total: 2.49 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -1.81 Total: 4.43 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.64 Total: -51.56 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.18 Total: -14.10 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.58 -7.25 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073678947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.840 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds