Wall clock time and date at job start Tue Mar 31 2020 12:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31932 * 120.16463 * 2 1 4 4 N 1.28283 * 122.31846 * 179.97438 * 3 2 1 5 5 C 1.31914 * 122.52065 * 0.02562 * 4 3 2 6 6 C 1.38508 * 119.96824 * 359.97438 * 5 4 3 7 7 C 1.39719 * 120.17702 * 179.97438 * 2 1 3 8 8 C 1.48133 * 121.14638 * 0.02562 * 7 2 1 9 9 O 1.21523 * 119.99761 * 6.34423 * 8 7 2 10 10 N 1.34775 * 120.00496 * 186.33884 * 8 7 2 11 11 C 1.46500 * 120.00191 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46936 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.46965 * 305.00628 * 12 11 10 14 14 C 1.54806 * 109.47029 * 185.01076 * 12 11 10 15 15 N 1.45122 * 109.53942 * 172.11081 * 14 12 11 16 16 C 1.36934 * 118.75503 * 269.28539 * 15 14 12 17 17 H 1.07999 * 120.00223 * 26.85934 * 16 15 14 18 18 C 1.38812 * 119.99644 * 206.84943 * 16 15 14 19 19 N 1.31618 * 120.00130 * 15.99728 * 18 16 15 20 20 Si 1.86806 * 119.99727 * 196.00178 * 18 16 15 21 21 H 1.48500 * 109.47220 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47036 * 119.99961 * 20 18 16 23 23 H 1.48499 * 109.46846 * 240.00010 * 20 18 16 24 24 C 1.47508 * 122.48394 * 89.29153 * 15 14 12 25 25 C 1.53578 * 111.02324 * 318.37143 * 24 15 14 26 26 C 1.51532 * 109.58487 * 320.01951 * 25 24 15 27 27 O 1.38014 * 109.46985 * 65.00052 * 12 11 10 28 28 H 1.09001 * 109.47455 * 96.91178 * 1 2 3 29 29 H 1.09002 * 109.46366 * 216.90913 * 1 2 3 30 30 H 1.08991 * 109.47557 * 336.90896 * 1 2 3 31 31 H 1.08001 * 120.01339 * 180.02562 * 5 4 3 32 32 H 1.07995 * 121.08698 * 179.72029 * 6 5 4 33 33 H 0.97001 * 119.99899 * 0.02562 * 10 8 7 34 34 H 1.08994 * 109.47153 * 299.99834 * 11 10 8 35 35 H 1.08997 * 109.46974 * 60.00177 * 11 10 8 36 36 H 1.09001 * 109.46021 * 292.13598 * 14 12 11 37 37 H 1.09001 * 109.46069 * 52.08500 * 14 12 11 38 38 H 0.97003 * 119.99765 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.16538 * 197.97436 * 24 15 14 40 40 H 1.09002 * 109.12563 * 78.73758 * 24 15 14 41 41 H 1.09004 * 109.44971 * 199.98769 * 25 24 15 42 42 H 1.09003 * 109.45056 * 80.05934 * 25 24 15 43 43 H 1.09003 * 109.58586 * 331.62542 * 26 25 24 44 44 H 1.08996 * 109.59300 * 211.18692 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1699 1.1407 0.0000 4 7 3.4519 1.1889 0.0005 5 6 4.2023 0.1040 0.0005 6 6 3.6092 -1.1476 0.0006 7 6 2.2093 -1.2078 0.0005 8 6 1.4985 -2.5075 0.0006 9 8 0.2893 -2.5386 -0.1162 10 7 2.1927 -3.6554 0.1299 11 6 1.4897 -4.9407 0.1294 12 6 2.5028 -6.0761 0.2888 13 1 3.2632 -5.9962 -0.4880 14 6 1.7765 -7.4373 0.1617 15 7 2.7552 -8.5082 0.1256 16 6 3.2378 -8.9190 -1.0883 17 1 3.2592 -8.2321 -1.9214 18 6 3.6995 -10.2183 -1.2479 19 7 3.3946 -11.1391 -0.3582 20 14 4.7539 -10.6598 -2.7254 21 1 4.9512 -9.4549 -3.5706 22 1 6.0725 -11.1604 -2.2607 23 1 4.0756 -11.7154 -3.5197 24 6 3.2498 -9.1710 1.3471 25 6 3.5089 -8.1478 2.4627 26 6 4.1356 -6.9007 1.8725 27 8 3.1013 -5.9879 1.5292 28 1 -0.3634 -0.1237 -1.0202 29 1 -0.3632 -0.8218 0.6172 30 1 -0.3634 0.9452 0.4030 31 1 5.2788 0.1918 0.0014 32 1 4.2061 -2.0476 -0.0039 33 1 3.1579 -3.6306 0.2234 34 1 0.7805 -4.9673 0.9566 35 1 0.9543 -5.0615 -0.8123 36 1 1.1159 -7.5777 1.0173 37 1 1.1890 -7.4511 -0.7563 38 1 3.7170 -12.0471 -0.4700 39 1 4.1780 -9.6948 1.1192 40 1 2.5066 -9.8917 1.6882 41 1 4.1850 -8.5792 3.2010 42 1 2.5656 -7.8876 2.9430 43 1 4.7019 -7.1640 0.9792 44 1 4.7987 -6.4425 2.6063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073678947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:03 Heat of formation + Delta-G solvation = -14.732625 kcal Electronic energy + Delta-G solvation = -27085.626639 eV Core-core repulsion = 23231.790331 eV Total energy + Delta-G solvation = -3853.836308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.38501 -40.84861 -40.11177 -37.03040 -36.19418 -34.80832 -34.49257 -33.55153 -33.32124 -30.36050 -29.21652 -27.52787 -27.11743 -26.30784 -24.48673 -23.90910 -22.32923 -22.01155 -21.31349 -19.27355 -18.90816 -18.70767 -17.63647 -17.16053 -16.98064 -16.77289 -16.63386 -16.50056 -16.22566 -15.72084 -15.51165 -15.40474 -14.77384 -14.62662 -14.35917 -14.29026 -13.90368 -13.72608 -13.59856 -13.25670 -13.13057 -12.97686 -12.79831 -12.48587 -12.39365 -12.09043 -12.04886 -11.76906 -11.48739 -11.46075 -11.37161 -11.31144 -10.86526 -10.60942 -10.54560 -10.27948 -10.16914 -8.72019 -7.89943 -5.37627 -0.78012 -0.19550 1.44779 1.48068 1.56971 1.63626 1.86194 2.49101 2.50348 2.75670 2.93972 3.24864 3.27381 3.31130 3.54151 3.61558 3.73252 4.06027 4.14089 4.22961 4.24766 4.36148 4.43595 4.49880 4.53825 4.59309 4.67733 4.69547 4.75667 4.84111 4.91968 4.92144 5.07508 5.14848 5.18943 5.21224 5.27316 5.36164 5.47033 5.62128 5.74836 6.34002 6.36537 6.74435 6.99312 7.14185 7.55989 7.86413 8.27797 9.15919 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.002804 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.382611 B = 9982.714115 C =10178.019626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.112 3.888 3 N -0.276 5.276 4 N -0.254 5.254 5 C 0.036 3.964 6 C -0.061 4.061 7 C -0.145 4.145 8 C 0.561 3.439 9 O -0.550 6.550 10 N -0.698 5.698 11 C 0.142 3.858 12 C 0.085 3.915 13 H 0.050 0.950 14 C 0.122 3.878 15 N -0.605 5.605 16 C -0.268 4.268 17 H 0.070 0.930 18 C -0.045 4.045 19 N -0.935 5.935 20 Si 0.962 3.038 21 H -0.264 1.264 22 H -0.290 1.290 23 H -0.297 1.297 24 C 0.185 3.815 25 C -0.165 4.165 26 C 0.092 3.908 27 O -0.392 6.392 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.220 0.780 32 H 0.192 0.808 33 H 0.414 0.586 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.249 0.751 39 H 0.044 0.956 40 H -0.008 1.008 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 18.093 3.281 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.033 4.033 3 N -0.118 5.118 4 N -0.094 5.094 5 C -0.128 4.128 6 C -0.090 4.090 7 C -0.160 4.160 8 C 0.347 3.653 9 O -0.429 6.429 10 N -0.350 5.350 11 C 0.018 3.982 12 C 0.023 3.977 13 H 0.068 0.932 14 C -0.006 4.006 15 N -0.327 5.327 16 C -0.398 4.398 17 H 0.088 0.912 18 C -0.241 4.241 19 N -0.580 5.580 20 Si 0.791 3.209 21 H -0.188 1.188 22 H -0.217 1.217 23 H -0.224 1.224 24 C 0.060 3.940 25 C -0.204 4.204 26 C 0.016 3.984 27 O -0.311 6.311 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.237 0.763 32 H 0.209 0.791 33 H 0.252 0.748 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.010 0.990 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.003 19.659 3.338 20.041 hybrid contribution 0.916 -2.837 -0.896 3.113 sum 2.919 16.822 2.443 17.247 Atomic orbital electron populations 1.20914 0.86014 1.04395 1.04562 1.23306 1.00181 0.88871 0.90955 1.73057 1.02276 1.24653 1.11796 1.72774 0.99614 1.29767 1.07281 1.24956 1.04432 0.88281 0.95145 1.23146 0.93072 1.01977 0.90848 1.21056 0.95781 0.94578 1.04562 1.18009 0.86687 0.83615 0.76963 1.90759 1.14462 1.87237 1.50432 1.45702 1.11833 1.04966 1.72463 1.21294 0.94045 0.79945 1.02875 1.22303 0.94685 0.94680 0.85991 0.93218 1.21577 0.91180 0.88025 0.99835 1.44034 1.46517 1.39390 1.02786 1.19539 1.35805 0.94024 0.90412 0.91221 1.25773 1.02409 0.95504 1.00409 1.70235 1.47634 1.01673 1.38488 0.85288 0.78276 0.77888 0.79460 1.18838 1.21671 1.22399 1.20760 0.96897 0.91656 0.84692 1.22623 1.01519 0.97541 0.98683 1.22076 0.88502 0.88697 0.99122 1.86102 1.53315 1.57006 1.34634 0.89323 0.88741 0.89759 0.76324 0.79126 0.74842 0.90841 0.89534 0.93927 0.92947 0.94170 0.93789 0.99017 0.89837 0.92123 0.93917 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 8.94 71.24 0.64 -1.43 16 2 C 0.11 2.51 6.91 42.90 0.30 2.81 16 3 N -0.28 -6.74 11.42 -46.95 -0.54 -7.28 16 4 N -0.25 -5.46 11.48 -57.33 -0.66 -6.12 16 5 C 0.04 0.48 11.30 84.74 0.96 1.43 16 6 C -0.06 -0.76 9.68 22.79 0.22 -0.54 16 7 C -0.15 -2.83 5.92 -19.84 -0.12 -2.95 16 8 C 0.56 12.67 7.73 86.87 0.67 13.34 16 9 O -0.55 -15.59 13.55 -3.79 -0.05 -15.64 16 10 N -0.70 -14.04 5.45 -465.70 -2.54 -16.58 16 11 C 0.14 3.50 5.34 86.38 0.46 3.96 16 12 C 0.09 2.49 2.68 31.21 0.08 2.58 16 13 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 14 C 0.12 4.58 5.12 87.25 0.45 5.02 16 15 N -0.61 -27.83 2.22 -698.15 -1.55 -29.38 16 16 C -0.27 -13.59 9.45 84.03 0.79 -12.79 16 17 H 0.07 3.43 7.88 -2.91 -0.02 3.40 16 18 C -0.05 -2.39 4.87 84.86 0.41 -1.97 16 19 N -0.93 -53.05 11.08 21.65 0.24 -52.81 16 20 Si 0.96 42.53 29.58 68.60 2.03 44.56 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 24 C 0.18 8.37 4.70 86.38 0.41 8.78 16 25 C -0.16 -5.51 5.78 30.31 0.18 -5.33 16 26 C 0.09 2.68 6.38 71.50 0.46 3.13 16 27 O -0.39 -11.25 9.38 -117.85 -1.11 -12.36 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 2.13 5.99 -2.39 -0.01 2.12 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.22 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.19 0.95 6.66 -2.91 -0.02 0.93 16 33 H 0.41 6.27 6.69 -92.71 -0.62 5.65 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.04 1.60 8.11 -2.39 -0.02 1.58 16 37 H 0.05 1.99 7.98 -2.39 -0.02 1.97 16 38 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.04 2.23 6.44 -2.39 -0.02 2.22 16 40 H -0.01 -0.43 8.03 -2.39 -0.02 -0.45 16 41 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.06 2.02 8.01 -2.39 -0.02 2.00 16 43 H 0.04 1.44 7.40 -2.39 -0.02 1.42 16 44 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -68.41 356.85 2.13 -66.28 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.40 Total: 13.29 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 5.90 Total: 16.04 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -5.04 Total: -112.17 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -1.16 Total: -27.99 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -68.41 2.13 -66.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073678947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.544 kcal (2) G-P(sol) polarization free energy of solvation -68.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds