Wall clock time and date at job start Tue Mar 31 2020 12:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31924 * 120.17410 * 2 1 4 4 N 1.28279 * 122.32733 * 180.26923 * 3 2 1 5 5 C 1.31916 * 122.51361 * 359.73317 * 4 3 2 6 6 C 1.38504 * 119.97370 * 359.97438 * 5 4 3 7 7 C 1.39731 * 120.17366 * 179.73546 * 2 1 3 8 8 C 1.48132 * 121.14174 * 0.02562 * 7 2 1 9 9 O 1.21509 * 120.00197 * 353.88059 * 8 7 2 10 10 N 1.34782 * 119.99880 * 173.87594 * 8 7 2 11 11 C 1.46499 * 119.99910 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46886 * 180.02562 * 11 10 8 13 13 H 1.08996 * 108.45213 * 57.87750 * 12 11 10 14 14 C 1.47478 * 108.54983 * 175.84787 * 12 11 10 15 15 N 1.50116 * 106.49021 * 178.00897 * 14 12 11 16 16 C 1.36940 * 120.63572 * 111.37100 * 15 14 12 17 17 H 1.08000 * 119.99629 * 155.11996 * 16 15 14 18 18 C 1.38809 * 119.99856 * 335.11774 * 16 15 14 19 19 N 1.31618 * 120.00313 * 343.66582 * 18 16 15 20 20 Si 1.86796 * 119.99635 * 163.66846 * 18 16 15 21 21 H 1.48495 * 109.47254 * 269.99858 * 20 18 16 22 22 H 1.48505 * 109.47477 * 30.00030 * 20 18 16 23 23 H 1.48504 * 109.46928 * 149.99931 * 20 18 16 24 24 C 1.43422 * 118.72741 * 291.10114 * 15 14 12 25 25 C 1.55333 * 116.24247 * 89.62219 * 24 15 14 26 26 C 1.55194 * 108.87326 * 319.46556 * 25 24 15 27 27 O 1.39640 * 110.56522 * 322.14451 * 26 25 24 28 28 H 1.09001 * 109.47330 * 263.73861 * 1 2 3 29 29 H 1.08995 * 109.47192 * 23.73930 * 1 2 3 30 30 H 1.08998 * 109.46924 * 143.73837 * 1 2 3 31 31 H 1.08006 * 120.01200 * 180.02562 * 5 4 3 32 32 H 1.07993 * 121.09148 * 179.97438 * 6 5 4 33 33 H 0.97003 * 119.99626 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47177 * 60.00412 * 11 10 8 35 35 H 1.08996 * 109.47096 * 300.00124 * 11 10 8 36 36 H 1.08999 * 110.11426 * 58.79423 * 14 12 11 37 37 H 1.09001 * 110.15229 * 297.24402 * 14 12 11 38 38 H 0.96996 * 120.00483 * 179.97438 * 19 18 16 39 39 H 1.09000 * 108.13011 * 211.37832 * 24 15 14 40 40 H 1.09003 * 108.13072 * 328.07752 * 24 15 14 41 41 H 1.09003 * 109.56522 * 79.27767 * 25 24 15 42 42 H 1.09002 * 109.57286 * 199.64634 * 25 24 15 43 43 H 1.09006 * 109.25642 * 82.41931 * 26 25 24 44 44 H 1.08992 * 109.25720 * 201.89767 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4519 1.1887 -0.0051 5 6 4.2023 0.1037 -0.0055 6 6 3.6091 -1.1478 0.0002 7 6 2.2093 -1.2080 0.0056 8 6 1.4983 -2.5075 0.0110 9 8 0.2887 -2.5378 0.1229 10 7 2.1930 -3.6563 -0.1082 11 6 1.4898 -4.9414 -0.1034 12 6 2.5035 -6.0779 -0.2511 13 1 3.2216 -6.0081 0.5658 14 6 1.7871 -7.3625 -0.1433 15 7 2.8126 -8.4404 -0.3434 16 6 3.1779 -9.2572 0.6932 17 1 3.5766 -10.2404 0.4913 18 6 3.0358 -8.8214 2.0034 19 7 2.8632 -7.5413 2.2562 20 14 3.0896 -10.0517 3.4079 21 1 1.7172 -10.5461 3.6858 22 1 3.9607 -11.1942 3.0322 23 1 3.6338 -9.3929 4.6225 24 6 3.3981 -8.6022 -1.6427 25 6 4.6829 -7.7760 -1.9248 26 6 4.5107 -6.3576 -1.3189 27 8 3.1981 -5.9103 -1.4826 28 1 -0.3634 -0.1121 1.0215 29 1 -0.3633 0.9407 -0.4137 30 1 -0.3633 -0.8286 -0.6078 31 1 5.2788 0.1914 -0.0095 32 1 4.2059 -2.0479 -0.0005 33 1 3.1587 -3.6320 -0.1972 34 1 0.7846 -4.9729 -0.9340 35 1 0.9498 -5.0566 0.8364 36 1 1.0202 -7.4299 -0.9149 37 1 1.3338 -7.4580 0.8434 38 1 2.7635 -7.2367 3.1717 39 1 3.6367 -9.6571 -1.7782 40 1 2.6514 -8.3274 -2.3878 41 1 5.5409 -8.2674 -1.4659 42 1 4.8374 -7.6972 -3.0009 43 1 4.7498 -6.3893 -0.2559 44 1 5.1901 -5.6680 -1.8197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073678948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:07 Heat of formation + Delta-G solvation = 12.842041 kcal Electronic energy + Delta-G solvation = -27642.675620 eV Core-core repulsion = 23790.035040 eV Total energy + Delta-G solvation = -3852.640580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.45807 -39.63828 -38.79850 -35.21840 -34.91345 -33.84987 -33.50950 -32.19893 -31.21404 -28.96485 -28.26786 -26.29879 -25.43448 -24.94209 -23.25453 -22.63013 -21.02435 -20.70725 -19.70167 -18.21980 -17.84201 -17.06621 -16.19873 -15.92606 -15.75207 -15.65849 -15.18206 -14.98579 -14.72269 -14.38460 -14.15614 -13.92583 -13.52666 -13.37655 -13.10767 -12.96102 -12.66434 -12.40912 -12.30971 -12.03879 -11.47746 -11.33519 -11.21177 -10.94432 -10.83608 -10.55180 -10.47829 -10.47355 -10.24693 -10.05945 -9.95137 -9.78784 -9.65847 -9.55337 -8.95913 -8.88406 -8.60576 -6.90338 -6.00275 -3.41236 0.12617 0.63043 2.70016 3.04208 3.27642 3.35624 3.36324 3.42685 3.79009 4.12499 4.16282 4.35500 4.44319 4.51958 4.64453 5.01990 5.13340 5.20350 5.22688 5.36513 5.57881 5.60293 5.70986 5.73023 5.80456 5.85429 5.89094 6.00784 6.15520 6.20289 6.28513 6.34659 6.40154 6.56472 6.58472 6.70052 6.77304 6.86220 7.00368 7.25448 7.47739 7.63169 8.00178 8.11586 8.24194 8.43205 8.98985 9.66242 10.19967 11.08618 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.003347 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.307631 B = 8364.531696 C = 8843.933859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.123 3.877 3 N -0.249 5.249 4 N -0.227 5.227 5 C 0.027 3.973 6 C -0.081 4.081 7 C -0.128 4.128 8 C 0.555 3.445 9 O -0.525 6.525 10 N -0.701 5.701 11 C 0.120 3.880 12 C 0.061 3.939 13 H 0.106 0.894 14 C 0.143 3.857 15 N -0.588 5.588 16 C -0.247 4.247 17 H 0.070 0.930 18 C 0.002 3.998 19 N -0.911 5.911 20 Si 0.907 3.093 21 H -0.287 1.287 22 H -0.280 1.280 23 H -0.291 1.291 24 C 0.160 3.840 25 C -0.172 4.172 26 C 0.067 3.933 27 O -0.371 6.371 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.179 0.821 32 H 0.156 0.844 33 H 0.400 0.600 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.019 0.981 37 H 0.108 0.892 38 H 0.255 0.745 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.062 0.938 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 10.237 -5.009 11.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.021 4.021 3 N -0.092 5.092 4 N -0.068 5.068 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.143 4.143 8 C 0.340 3.660 9 O -0.402 6.402 10 N -0.351 5.351 11 C -0.004 4.004 12 C 0.003 3.997 13 H 0.124 0.876 14 C 0.018 3.982 15 N -0.309 5.309 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.195 4.195 19 N -0.557 5.557 20 Si 0.737 3.263 21 H -0.214 1.214 22 H -0.206 1.206 23 H -0.218 1.218 24 C 0.031 3.969 25 C -0.213 4.213 26 C -0.011 4.011 27 O -0.289 6.289 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.124 0.876 31 H 0.196 0.804 32 H 0.173 0.827 33 H 0.235 0.765 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.037 0.963 37 H 0.126 0.874 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.892 11.939 -4.934 12.949 hybrid contribution 1.140 -2.311 0.959 2.749 sum 2.031 9.628 -3.975 10.613 Atomic orbital electron populations 1.20981 0.86217 1.04381 1.04752 1.23167 0.99750 0.88534 0.90657 1.73073 1.01481 1.24117 1.10519 1.72853 0.99722 1.27868 1.06404 1.24285 1.02780 0.89216 0.97363 1.22734 0.94212 1.00553 0.93535 1.21207 0.94526 0.96009 1.02543 1.17845 0.87049 0.83169 0.77926 1.90741 1.13129 1.86845 1.49518 1.45870 1.11088 1.05976 1.72157 1.21840 0.95556 0.80522 1.02447 1.22343 0.96370 0.94365 0.86656 0.87602 1.20891 0.90117 0.85745 1.01475 1.44085 1.42219 1.37686 1.06875 1.19306 1.38104 0.95119 0.85112 0.91246 1.24914 1.01326 0.95714 0.97591 1.69823 1.54455 1.12303 1.19156 0.86214 0.77865 0.80535 0.81689 1.21405 1.20564 1.21780 1.20375 0.92278 0.96321 0.87878 1.23578 1.01512 0.97376 0.98841 1.22356 0.83890 0.94187 1.00682 1.87517 1.23529 1.83059 1.34823 0.89326 0.90692 0.87625 0.80433 0.82681 0.76540 0.91450 0.89790 0.96252 0.87390 0.93453 0.94835 0.94995 0.92445 0.93119 0.91924 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 8.96 36.00 0.32 -0.90 16 2 C 0.12 1.61 6.91 -82.00 -0.57 1.04 16 3 N -0.25 -3.45 11.42 33.81 0.39 -3.06 16 4 N -0.23 -2.91 11.48 30.53 0.35 -2.56 16 5 C 0.03 0.27 11.30 -17.42 -0.20 0.07 16 6 C -0.08 -0.79 9.68 -38.78 -0.38 -1.17 16 7 C -0.13 -1.61 5.92 -104.57 -0.62 -2.23 16 8 C 0.56 8.03 7.73 -12.20 -0.09 7.94 16 9 O -0.52 -8.77 13.53 5.36 0.07 -8.70 16 10 N -0.70 -9.94 5.39 -61.16 -0.33 -10.26 16 11 C 0.12 1.99 5.24 -4.04 -0.02 1.97 16 12 C 0.06 1.14 1.94 -29.39 -0.06 1.09 16 13 H 0.11 2.23 5.29 -51.93 -0.27 1.95 16 14 C 0.14 3.04 4.74 -4.68 -0.02 3.01 16 15 N -0.59 -13.42 2.60 -174.20 -0.45 -13.87 16 16 C -0.25 -6.17 9.63 -15.06 -0.15 -6.32 16 17 H 0.07 1.75 7.86 -52.49 -0.41 1.33 16 18 C 0.00 0.05 4.99 -17.43 -0.09 -0.04 16 19 N -0.91 -22.66 9.43 55.49 0.52 -22.13 16 20 Si 0.91 20.22 29.58 -169.99 -5.03 15.19 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 24 C 0.16 3.22 5.33 -4.43 -0.02 3.19 16 25 C -0.17 -3.00 6.75 -24.33 -0.16 -3.17 16 26 C 0.07 1.14 6.38 38.32 0.24 1.38 16 27 O -0.37 -6.64 9.53 -31.94 -0.30 -6.95 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.11 1.33 5.95 -51.93 -0.31 1.03 16 31 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.16 1.11 6.65 -52.49 -0.35 0.76 16 33 H 0.40 4.93 6.55 -40.82 -0.27 4.66 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 2.54 5.96 -51.93 -0.31 2.23 16 38 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 39 H 0.03 0.67 7.97 -51.93 -0.41 0.25 16 40 H 0.03 0.63 7.98 -51.93 -0.41 0.21 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.20 6.66 -51.93 -0.35 0.86 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -28.20 352.17 -7.32 -35.51 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.04 Total: 5.66 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -1.81 Total: 5.87 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.48 Total: -51.89 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.23 Total: -15.65 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.20 -7.32 -35.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073678948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.356 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds