Wall clock time and date at job start Tue Mar 31 2020 12:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31924 * 120.17410 * 2 1 4 4 N 1.28279 * 122.32733 * 180.26923 * 3 2 1 5 5 C 1.31916 * 122.51361 * 359.73317 * 4 3 2 6 6 C 1.38504 * 119.97370 * 359.97438 * 5 4 3 7 7 C 1.39731 * 120.17366 * 179.73546 * 2 1 3 8 8 C 1.48132 * 121.14174 * 0.02562 * 7 2 1 9 9 O 1.21509 * 120.00197 * 353.88059 * 8 7 2 10 10 N 1.34782 * 119.99880 * 173.87594 * 8 7 2 11 11 C 1.46499 * 119.99910 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46886 * 180.02562 * 11 10 8 13 13 H 1.08996 * 108.45213 * 57.87750 * 12 11 10 14 14 C 1.47478 * 108.54983 * 175.84787 * 12 11 10 15 15 N 1.50116 * 106.49021 * 178.00897 * 14 12 11 16 16 C 1.36940 * 120.63572 * 111.37100 * 15 14 12 17 17 H 1.08000 * 119.99629 * 155.11996 * 16 15 14 18 18 C 1.38809 * 119.99856 * 335.11774 * 16 15 14 19 19 N 1.31618 * 120.00313 * 343.66582 * 18 16 15 20 20 Si 1.86796 * 119.99635 * 163.66846 * 18 16 15 21 21 H 1.48495 * 109.47254 * 269.99858 * 20 18 16 22 22 H 1.48505 * 109.47477 * 30.00030 * 20 18 16 23 23 H 1.48504 * 109.46928 * 149.99931 * 20 18 16 24 24 C 1.43422 * 118.72741 * 291.10114 * 15 14 12 25 25 C 1.55333 * 116.24247 * 89.62219 * 24 15 14 26 26 C 1.55194 * 108.87326 * 319.46556 * 25 24 15 27 27 O 1.39640 * 110.56522 * 322.14451 * 26 25 24 28 28 H 1.09001 * 109.47330 * 263.73861 * 1 2 3 29 29 H 1.08995 * 109.47192 * 23.73930 * 1 2 3 30 30 H 1.08998 * 109.46924 * 143.73837 * 1 2 3 31 31 H 1.08006 * 120.01200 * 180.02562 * 5 4 3 32 32 H 1.07993 * 121.09148 * 179.97438 * 6 5 4 33 33 H 0.97003 * 119.99626 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47177 * 60.00412 * 11 10 8 35 35 H 1.08996 * 109.47096 * 300.00124 * 11 10 8 36 36 H 1.08999 * 110.11426 * 58.79423 * 14 12 11 37 37 H 1.09001 * 110.15229 * 297.24402 * 14 12 11 38 38 H 0.96996 * 120.00483 * 179.97438 * 19 18 16 39 39 H 1.09000 * 108.13011 * 211.37832 * 24 15 14 40 40 H 1.09003 * 108.13072 * 328.07752 * 24 15 14 41 41 H 1.09003 * 109.56522 * 79.27767 * 25 24 15 42 42 H 1.09002 * 109.57286 * 199.64634 * 25 24 15 43 43 H 1.09006 * 109.25642 * 82.41931 * 26 25 24 44 44 H 1.08992 * 109.25720 * 201.89767 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4519 1.1887 -0.0051 5 6 4.2023 0.1037 -0.0055 6 6 3.6091 -1.1478 0.0002 7 6 2.2093 -1.2080 0.0056 8 6 1.4983 -2.5075 0.0110 9 8 0.2887 -2.5378 0.1229 10 7 2.1930 -3.6563 -0.1082 11 6 1.4898 -4.9414 -0.1034 12 6 2.5035 -6.0779 -0.2511 13 1 3.2216 -6.0081 0.5658 14 6 1.7871 -7.3625 -0.1433 15 7 2.8126 -8.4404 -0.3434 16 6 3.1779 -9.2572 0.6932 17 1 3.5766 -10.2404 0.4913 18 6 3.0358 -8.8214 2.0034 19 7 2.8632 -7.5413 2.2562 20 14 3.0896 -10.0517 3.4079 21 1 1.7172 -10.5461 3.6858 22 1 3.9607 -11.1942 3.0322 23 1 3.6338 -9.3929 4.6225 24 6 3.3981 -8.6022 -1.6427 25 6 4.6829 -7.7760 -1.9248 26 6 4.5107 -6.3576 -1.3189 27 8 3.1981 -5.9103 -1.4826 28 1 -0.3634 -0.1121 1.0215 29 1 -0.3633 0.9407 -0.4137 30 1 -0.3633 -0.8286 -0.6078 31 1 5.2788 0.1914 -0.0095 32 1 4.2059 -2.0479 -0.0005 33 1 3.1587 -3.6320 -0.1972 34 1 0.7846 -4.9729 -0.9340 35 1 0.9498 -5.0566 0.8364 36 1 1.0202 -7.4299 -0.9149 37 1 1.3338 -7.4580 0.8434 38 1 2.7635 -7.2367 3.1717 39 1 3.6367 -9.6571 -1.7782 40 1 2.6514 -8.3274 -2.3878 41 1 5.5409 -8.2674 -1.4659 42 1 4.8374 -7.6972 -3.0009 43 1 4.7498 -6.3893 -0.2559 44 1 5.1901 -5.6680 -1.8197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073678948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:06 Heat of formation + Delta-G solvation = -5.529829 kcal Electronic energy + Delta-G solvation = -27643.472284 eV Core-core repulsion = 23790.035040 eV Total energy + Delta-G solvation = -3853.437244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39681 -40.93985 -40.12549 -36.81895 -36.23271 -34.81411 -34.51275 -33.72916 -32.82694 -30.38846 -29.32213 -27.57181 -27.04945 -26.19871 -24.38694 -23.92429 -22.42936 -21.94950 -21.29374 -19.30691 -18.97309 -18.61988 -17.68289 -16.96936 -16.80699 -16.75483 -16.54232 -16.41065 -16.11498 -15.70769 -15.54494 -15.27845 -14.81724 -14.60690 -14.36486 -14.18650 -13.97825 -13.76590 -13.56442 -13.24913 -13.22143 -12.96186 -12.63413 -12.49017 -12.26390 -12.10270 -11.93184 -11.76105 -11.49754 -11.38743 -11.36712 -11.18199 -10.87160 -10.62351 -10.55820 -10.26743 -10.14294 -8.69615 -7.88521 -5.30796 -0.79518 -0.21289 1.48203 1.52971 1.57736 1.63671 1.89785 2.49316 2.52314 2.92617 3.11808 3.25893 3.29007 3.30423 3.50656 3.59927 3.71432 4.15613 4.23235 4.28526 4.38502 4.42143 4.43445 4.49044 4.57322 4.68215 4.75472 4.77998 4.80798 4.90127 4.92945 5.06944 5.09302 5.19312 5.20693 5.24928 5.35525 5.37600 5.43072 5.53245 5.68467 6.34752 6.39120 6.52987 6.99476 7.12757 7.54105 7.84042 8.36141 9.16965 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.003347 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.307631 B = 8364.531696 C = 8843.933859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.113 3.887 3 N -0.273 5.273 4 N -0.252 5.252 5 C 0.038 3.962 6 C -0.063 4.063 7 C -0.144 4.144 8 C 0.558 3.442 9 O -0.552 6.552 10 N -0.694 5.694 11 C 0.133 3.867 12 C 0.080 3.920 13 H 0.086 0.914 14 C 0.143 3.857 15 N -0.603 5.603 16 C -0.261 4.261 17 H 0.061 0.939 18 C -0.033 4.033 19 N -0.917 5.917 20 Si 0.957 3.043 21 H -0.292 1.292 22 H -0.277 1.277 23 H -0.295 1.295 24 C 0.154 3.846 25 C -0.166 4.166 26 C 0.067 3.933 27 O -0.367 6.367 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.222 0.778 32 H 0.187 0.813 33 H 0.411 0.589 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.023 0.977 37 H 0.082 0.918 38 H 0.251 0.749 39 H 0.028 0.972 40 H 0.034 0.966 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.794 10.839 -5.782 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.032 4.032 3 N -0.115 5.115 4 N -0.092 5.092 5 C -0.126 4.126 6 C -0.093 4.093 7 C -0.159 4.159 8 C 0.344 3.656 9 O -0.431 6.431 10 N -0.345 5.345 11 C 0.008 3.992 12 C 0.021 3.979 13 H 0.104 0.896 14 C 0.018 3.982 15 N -0.324 5.324 16 C -0.391 4.391 17 H 0.079 0.921 18 C -0.230 4.230 19 N -0.563 5.563 20 Si 0.787 3.213 21 H -0.219 1.219 22 H -0.203 1.203 23 H -0.221 1.221 24 C 0.026 3.974 25 C -0.207 4.207 26 C -0.010 4.010 27 O -0.286 6.286 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.238 0.762 32 H 0.204 0.796 33 H 0.248 0.752 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.764 12.562 -5.731 14.082 hybrid contribution 0.615 -2.547 1.152 2.862 sum 3.379 10.015 -4.580 11.519 Atomic orbital electron populations 1.20916 0.85970 1.04480 1.04508 1.23295 1.00200 0.88756 0.90986 1.73040 1.02273 1.24480 1.11719 1.72768 0.99591 1.29600 1.07270 1.24942 1.04445 0.88100 0.95116 1.23119 0.93097 1.02000 0.91045 1.21057 0.95800 0.94540 1.04471 1.18087 0.86775 0.83706 0.77022 1.90733 1.14472 1.87297 1.50645 1.45675 1.11541 1.05050 1.72206 1.21486 0.94930 0.81134 1.01609 1.21876 0.95875 0.93713 0.86397 0.89596 1.20822 0.90296 0.86942 1.00105 1.44202 1.42911 1.38003 1.07289 1.19410 1.38323 0.95310 0.86075 0.92093 1.25422 1.01610 0.96940 0.98988 1.69940 1.54570 1.12896 1.18918 0.85425 0.77311 0.79062 0.79464 1.21902 1.20266 1.22145 1.20485 0.93599 0.96726 0.86610 1.23497 0.99574 0.97044 1.00541 1.22423 0.83981 0.94899 0.99742 1.87521 1.24024 1.82906 1.34145 0.89447 0.89494 0.88812 0.76184 0.79586 0.75249 0.91633 0.91260 0.95859 0.89959 0.93956 0.95335 0.94749 0.92792 0.90442 0.94256 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.36 8.96 71.24 0.64 -1.72 16 2 C 0.11 2.88 6.91 42.91 0.30 3.18 16 3 N -0.27 -7.33 11.42 -46.95 -0.54 -7.87 16 4 N -0.25 -6.00 11.48 -57.33 -0.66 -6.65 16 5 C 0.04 0.61 11.30 84.74 0.96 1.57 16 6 C -0.06 -1.04 9.68 22.79 0.22 -0.82 16 7 C -0.14 -3.41 5.92 -19.83 -0.12 -3.53 16 8 C 0.56 15.68 7.73 86.87 0.67 16.35 16 9 O -0.55 -18.56 13.53 -3.74 -0.05 -18.61 16 10 N -0.69 -18.73 5.39 -465.70 -2.51 -21.24 16 11 C 0.13 4.36 5.24 86.38 0.45 4.82 16 12 C 0.08 2.95 1.94 28.87 0.06 3.00 16 13 H 0.09 3.58 5.29 -2.39 -0.01 3.57 16 14 C 0.14 6.13 4.74 83.95 0.40 6.53 16 15 N -0.60 -27.48 2.60 -705.06 -1.84 -29.31 16 16 C -0.26 -13.13 9.63 84.03 0.81 -12.32 16 17 H 0.06 3.10 7.86 -2.91 -0.02 3.07 16 18 C -0.03 -1.66 4.99 84.86 0.42 -1.24 16 19 N -0.92 -45.92 9.43 21.65 0.20 -45.72 16 20 Si 0.96 41.69 29.58 68.60 2.03 43.72 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 24 C 0.15 6.01 5.33 87.75 0.47 6.48 16 25 C -0.17 -5.39 6.75 32.15 0.22 -5.18 16 26 C 0.07 2.12 6.38 72.73 0.46 2.58 16 27 O -0.37 -12.38 9.53 -137.19 -1.31 -13.69 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 2.42 5.95 -2.39 -0.01 2.41 16 31 H 0.22 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.19 1.84 6.65 -2.91 -0.02 1.82 16 33 H 0.41 9.11 6.55 -92.71 -0.61 8.50 16 34 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 3.97 5.96 -2.39 -0.01 3.95 16 38 H 0.25 12.46 8.31 -92.71 -0.77 11.69 16 39 H 0.03 1.12 7.97 -2.39 -0.02 1.10 16 40 H 0.03 1.30 7.98 -2.39 -0.02 1.29 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.04 1.45 6.66 -2.38 -0.02 1.43 16 44 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -61.28 352.17 1.72 -59.56 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.43 Total: 20.12 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 5.96 Total: 19.70 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -5.34 Total: -110.79 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -1.36 Total: -32.30 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -61.28 1.72 -59.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073678948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.029 kcal (2) G-P(sol) polarization free energy of solvation -61.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds