Wall clock time and date at job start Tue Mar 31 2020 13:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30447 * 125.98812 * 2 1 4 4 N 1.39937 * 108.89363 * 180.02562 * 3 2 1 5 5 H 0.96997 * 125.75163 * 179.97438 * 4 3 2 6 6 C 1.34263 * 108.49380 * 359.75577 * 4 3 2 7 7 C 1.38048 * 107.41377 * 0.39053 * 6 4 3 8 8 C 1.47426 * 126.41295 * 179.87307 * 7 6 4 9 9 O 1.21599 * 120.00092 * 220.27868 * 8 7 6 10 10 N 1.34784 * 120.00154 * 40.28069 * 8 7 6 11 11 C 1.46839 * 120.40593 * 5.53181 * 10 8 7 12 12 C 1.53368 * 109.23783 * 127.72259 * 11 10 8 13 13 C 1.52781 * 108.81944 * 53.84279 * 12 11 10 14 14 H 1.08991 * 109.33957 * 57.14688 * 13 12 11 15 15 O 1.42603 * 111.11935 * 177.45141 * 13 12 11 16 16 C 1.43147 * 113.62007 * 183.64761 * 15 13 12 17 17 C 1.53198 * 109.73922 * 298.30431 * 16 15 13 18 18 N 1.47355 * 108.80251 * 51.20855 * 17 16 15 19 19 C 1.36940 * 121.30238 * 130.03482 * 18 17 16 20 20 H 1.07997 * 119.99958 * 212.82863 * 19 18 17 21 21 C 1.38817 * 119.99957 * 32.82744 * 19 18 17 22 22 N 1.31620 * 119.99741 * 14.28773 * 21 19 18 23 23 Si 1.86793 * 120.00159 * 194.28829 * 21 19 18 24 24 H 1.48502 * 109.47417 * 90.00098 * 23 21 19 25 25 H 1.48493 * 109.47471 * 210.00073 * 23 21 19 26 26 H 1.48505 * 109.47290 * 330.00242 * 23 21 19 27 27 C 1.46873 * 117.39175 * 309.76670 * 18 17 16 28 28 H 1.08997 * 109.65755 * 291.64896 * 27 18 17 29 29 C 1.47128 * 120.40848 * 185.51325 * 10 8 7 30 30 H 1.09000 * 109.47248 * 269.95613 * 1 2 3 31 31 H 1.09002 * 109.47094 * 29.95160 * 1 2 3 32 32 H 1.08995 * 109.47568 * 149.95816 * 1 2 3 33 33 H 1.08003 * 126.29371 * 180.24036 * 6 4 3 34 34 H 1.08995 * 109.51092 * 247.65043 * 11 10 8 35 35 H 1.08998 * 109.51320 * 7.79356 * 11 10 8 36 36 H 1.09007 * 109.57872 * 173.63950 * 12 11 10 37 37 H 1.09002 * 109.57839 * 294.03600 * 12 11 10 38 38 H 1.08994 * 109.43119 * 58.39139 * 16 15 13 39 39 H 1.09004 * 109.42622 * 178.28311 * 16 15 13 40 40 H 1.09002 * 109.58387 * 291.41892 * 17 16 15 41 41 H 1.09000 * 109.58015 * 171.00664 * 17 16 15 42 42 H 0.97003 * 120.00059 * 180.02562 * 22 21 19 43 43 H 1.08991 * 109.72540 * 113.58494 * 29 10 8 44 44 H 1.08996 * 109.76142 * 352.93126 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2300 -0.0011 6 6 3.6439 -0.6981 0.0045 7 6 2.3372 -1.1433 -0.0007 8 6 1.8914 -2.5485 -0.0005 9 8 0.9448 -2.8862 -0.6851 10 7 2.5330 -3.4590 0.7584 11 6 3.5977 -3.0412 1.6793 12 6 3.3008 -3.5936 3.0789 13 6 3.0929 -5.1038 2.9789 14 1 3.9770 -5.5612 2.5349 15 8 2.8707 -5.6782 4.2651 16 6 2.7512 -7.1045 4.2434 17 6 1.5457 -7.5099 3.3894 18 7 1.6397 -6.8334 2.0837 19 6 1.5072 -7.5283 0.9111 20 1 2.0599 -7.2208 0.0358 21 6 0.6624 -8.6279 0.8477 22 7 -0.2156 -8.8393 1.8052 23 14 0.7716 -9.8076 -0.5965 24 1 1.7440 -10.8853 -0.2830 25 1 -0.5642 -10.4047 -0.8500 26 1 1.2218 -9.0707 -1.8046 27 6 1.8750 -5.3836 2.0892 28 1 0.9964 -4.8710 2.4806 29 6 2.1750 -4.8836 0.6747 30 1 -0.3634 -0.0008 1.0277 31 1 -0.3633 0.8904 -0.5131 32 1 -0.3634 -0.8895 -0.5144 33 1 4.5297 -1.3159 0.0090 34 1 4.5543 -3.4298 1.3301 35 1 3.6387 -1.9527 1.7187 36 1 4.1415 -3.3836 3.7404 37 1 2.3983 -3.1258 3.4723 38 1 3.6574 -7.5379 3.8203 39 1 2.6141 -7.4724 5.2603 40 1 0.6255 -7.2100 3.8907 41 1 1.5488 -8.5899 3.2423 42 1 -0.8057 -9.6080 1.7612 43 1 3.0070 -5.4479 0.2537 44 1 1.2926 -5.0055 0.0466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074303889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:05 Heat of formation + Delta-G solvation = 29.223271 kcal Electronic energy + Delta-G solvation = -28306.431034 eV Core-core repulsion = 24454.500797 eV Total energy + Delta-G solvation = -3851.930237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61683 -39.76401 -38.31129 -36.01066 -34.67403 -33.11725 -32.03653 -31.38885 -30.55761 -29.57203 -28.08766 -27.00027 -25.32883 -23.97901 -22.91514 -21.99812 -21.17249 -20.33280 -19.68656 -19.32482 -17.69700 -16.76522 -16.74300 -15.58734 -15.44293 -15.38424 -15.03422 -14.76599 -14.55844 -14.28923 -13.93482 -13.63775 -13.47747 -13.03497 -12.98189 -12.93102 -12.85057 -12.55141 -12.36272 -12.17032 -11.85188 -11.34131 -11.05971 -11.00387 -10.90099 -10.82014 -10.63070 -10.25638 -10.21790 -10.04131 -9.67866 -9.62053 -9.56795 -8.97553 -8.83411 -8.53238 -8.29916 -6.65426 -5.83808 -3.34442 1.42000 2.13024 2.50678 3.12158 3.35803 3.40638 3.43593 3.44868 4.23683 4.39074 4.43700 4.49769 4.88203 4.95605 5.02070 5.20746 5.31087 5.36874 5.39575 5.43424 5.52351 5.62640 5.71158 5.73635 5.75866 5.91472 5.94856 5.95532 6.09700 6.15622 6.26450 6.32616 6.36981 6.47673 6.69565 6.77801 6.89236 6.91116 7.10292 7.36912 7.46505 7.68263 7.74770 7.88243 8.36212 8.47374 9.10581 9.72906 10.34407 11.24076 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.004141 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.976632 B = 6760.024314 C = 7816.863316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.131 3.869 3 N -0.301 5.301 4 N -0.465 5.465 5 H 0.442 0.558 6 C 0.097 3.903 7 C -0.275 4.275 8 C 0.591 3.409 9 O -0.533 6.533 10 N -0.607 5.607 11 C 0.108 3.892 12 C -0.124 4.124 13 C 0.078 3.922 14 H 0.051 0.949 15 O -0.390 6.390 16 C 0.040 3.960 17 C 0.146 3.854 18 N -0.586 5.586 19 C -0.263 4.263 20 H 0.069 0.931 21 C 0.013 3.987 22 N -0.897 5.897 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.276 1.276 27 C 0.137 3.863 28 H 0.038 0.962 29 C 0.126 3.874 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.187 0.813 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.030 0.970 41 H 0.085 0.915 42 H 0.255 0.745 43 H 0.071 0.929 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.822 15.477 0.708 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 N -0.124 5.124 4 N -0.170 5.170 5 H 0.287 0.713 6 C -0.055 4.055 7 C -0.290 4.290 8 C 0.379 3.621 9 O -0.409 6.409 10 N -0.341 5.341 11 C -0.016 4.016 12 C -0.162 4.162 13 C 0.018 3.982 14 H 0.069 0.931 15 O -0.309 6.309 16 C -0.038 4.038 17 C 0.020 3.980 18 N -0.311 5.311 19 C -0.393 4.393 20 H 0.087 0.913 21 C -0.187 4.187 22 N -0.539 5.539 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.202 1.202 27 C 0.029 3.971 28 H 0.055 0.945 29 C 0.005 3.995 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.204 0.796 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.170 16.500 0.488 19.389 hybrid contribution 0.605 -1.553 -0.744 1.825 sum 10.776 14.948 -0.256 18.429 Atomic orbital electron populations 1.20378 0.85803 1.04532 1.03577 1.22437 0.97304 0.88653 0.95293 1.77135 0.86273 1.22395 1.26617 1.46058 1.07746 1.05374 1.57848 0.71320 1.23169 0.98957 0.85449 0.97929 1.20325 0.92312 0.94825 1.21527 1.17291 0.82029 0.83373 0.79429 1.90780 1.27492 1.80148 1.42500 1.48133 1.37043 1.08363 1.40566 1.21852 0.90453 1.00231 0.89036 1.21841 1.02956 0.95152 0.96294 1.22422 0.98125 0.92256 0.85361 0.93057 1.87741 1.93517 1.21226 1.28395 1.23312 0.99792 0.80287 1.00410 1.21344 0.93108 0.98727 0.84811 1.43972 1.84801 0.99806 1.02521 1.19063 1.20359 1.09767 0.90067 0.91328 1.25210 0.95018 1.00859 0.97622 1.70020 1.20721 1.29045 1.34156 0.86296 0.77007 0.81144 0.82368 1.21353 1.21601 1.20155 1.21317 0.94955 0.87772 0.93061 0.94469 1.21754 1.02509 0.76881 0.98361 0.90157 0.90667 0.88570 0.79629 0.91417 0.89425 0.90432 0.90822 0.94132 0.90118 0.95206 0.89697 0.93466 0.91059 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.27 36.01 0.37 -0.64 16 2 C 0.13 1.72 7.26 -82.02 -0.60 1.12 16 3 N -0.30 -3.62 12.63 33.89 0.43 -3.19 16 4 N -0.47 -3.90 7.29 30.85 0.22 -3.67 16 5 H 0.44 1.96 8.96 -182.72 -1.64 0.32 16 6 C 0.10 0.86 9.63 -16.56 -0.16 0.70 16 7 C -0.27 -3.61 5.20 -105.07 -0.55 -4.15 16 8 C 0.59 9.74 7.44 -12.52 -0.09 9.65 16 9 O -0.53 -10.87 15.17 5.28 0.08 -10.79 16 10 N -0.61 -9.46 2.98 -173.96 -0.52 -9.98 16 11 C 0.11 1.24 5.40 -3.67 -0.02 1.22 16 12 C -0.12 -1.68 5.82 -26.65 -0.16 -1.83 16 13 C 0.08 1.38 2.48 -26.64 -0.07 1.32 16 14 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 15 O -0.39 -7.57 10.49 -35.23 -0.37 -7.94 16 16 C 0.04 0.77 6.95 37.26 0.26 1.03 16 17 C 0.15 3.43 5.37 -3.47 -0.02 3.42 16 18 N -0.59 -14.42 3.01 -164.35 -0.49 -14.92 16 19 C -0.26 -6.97 8.72 -15.06 -0.13 -7.10 16 20 H 0.07 1.77 6.42 -52.49 -0.34 1.43 16 21 C 0.01 0.36 4.97 -17.43 -0.09 0.27 16 22 N -0.90 -25.71 11.52 55.49 0.64 -25.07 16 23 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 C 0.14 2.89 3.03 -67.52 -0.20 2.68 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 29 C 0.13 2.44 4.56 -3.70 -0.02 2.43 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.32 6.81 -51.93 -0.35 0.96 16 33 H 0.19 1.00 7.33 -52.48 -0.38 0.62 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.82 4.83 -51.93 -0.25 0.57 16 36 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 2.16 6.64 -51.93 -0.34 1.81 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.07 1.36 7.35 -51.93 -0.38 0.97 16 44 H 0.10 2.36 6.81 -51.93 -0.35 2.01 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -33.97 345.95 -8.70 -42.66 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.41 Total: 1.18 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.46 Total: 10.12 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.28 Total: -56.83 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.29 Total: -18.72 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.97 -8.70 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074303889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.887 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds