Wall clock time and date at job start Tue Mar 31 2020 13:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30447 * 125.98812 * 2 1 4 4 N 1.39937 * 108.89363 * 180.02562 * 3 2 1 5 5 H 0.96997 * 125.75163 * 179.97438 * 4 3 2 6 6 C 1.34263 * 108.49380 * 359.75577 * 4 3 2 7 7 C 1.38048 * 107.41377 * 0.39053 * 6 4 3 8 8 C 1.47426 * 126.41295 * 179.87307 * 7 6 4 9 9 O 1.21599 * 120.00092 * 220.27868 * 8 7 6 10 10 N 1.34784 * 120.00154 * 40.28069 * 8 7 6 11 11 C 1.46839 * 120.40593 * 5.53181 * 10 8 7 12 12 C 1.53368 * 109.23783 * 127.72259 * 11 10 8 13 13 C 1.52781 * 108.81944 * 53.84279 * 12 11 10 14 14 H 1.08991 * 109.33957 * 57.14688 * 13 12 11 15 15 O 1.42603 * 111.11935 * 177.45141 * 13 12 11 16 16 C 1.43147 * 113.62007 * 183.64761 * 15 13 12 17 17 C 1.53198 * 109.73922 * 298.30431 * 16 15 13 18 18 N 1.47355 * 108.80251 * 51.20855 * 17 16 15 19 19 C 1.36940 * 121.30238 * 130.03482 * 18 17 16 20 20 H 1.07997 * 119.99958 * 212.82863 * 19 18 17 21 21 C 1.38817 * 119.99957 * 32.82744 * 19 18 17 22 22 N 1.31620 * 119.99741 * 14.28773 * 21 19 18 23 23 Si 1.86793 * 120.00159 * 194.28829 * 21 19 18 24 24 H 1.48502 * 109.47417 * 90.00098 * 23 21 19 25 25 H 1.48493 * 109.47471 * 210.00073 * 23 21 19 26 26 H 1.48505 * 109.47290 * 330.00242 * 23 21 19 27 27 C 1.46873 * 117.39175 * 309.76670 * 18 17 16 28 28 H 1.08997 * 109.65755 * 291.64896 * 27 18 17 29 29 C 1.47128 * 120.40848 * 185.51325 * 10 8 7 30 30 H 1.09000 * 109.47248 * 269.95613 * 1 2 3 31 31 H 1.09002 * 109.47094 * 29.95160 * 1 2 3 32 32 H 1.08995 * 109.47568 * 149.95816 * 1 2 3 33 33 H 1.08003 * 126.29371 * 180.24036 * 6 4 3 34 34 H 1.08995 * 109.51092 * 247.65043 * 11 10 8 35 35 H 1.08998 * 109.51320 * 7.79356 * 11 10 8 36 36 H 1.09007 * 109.57872 * 173.63950 * 12 11 10 37 37 H 1.09002 * 109.57839 * 294.03600 * 12 11 10 38 38 H 1.08994 * 109.43119 * 58.39139 * 16 15 13 39 39 H 1.09004 * 109.42622 * 178.28311 * 16 15 13 40 40 H 1.09002 * 109.58387 * 291.41892 * 17 16 15 41 41 H 1.09000 * 109.58015 * 171.00664 * 17 16 15 42 42 H 0.97003 * 120.00059 * 180.02562 * 22 21 19 43 43 H 1.08991 * 109.72540 * 113.58494 * 29 10 8 44 44 H 1.08996 * 109.76142 * 352.93126 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2300 -0.0011 6 6 3.6439 -0.6981 0.0045 7 6 2.3372 -1.1433 -0.0007 8 6 1.8914 -2.5485 -0.0005 9 8 0.9448 -2.8862 -0.6851 10 7 2.5330 -3.4590 0.7584 11 6 3.5977 -3.0412 1.6793 12 6 3.3008 -3.5936 3.0789 13 6 3.0929 -5.1038 2.9789 14 1 3.9770 -5.5612 2.5349 15 8 2.8707 -5.6782 4.2651 16 6 2.7512 -7.1045 4.2434 17 6 1.5457 -7.5099 3.3894 18 7 1.6397 -6.8334 2.0837 19 6 1.5072 -7.5283 0.9111 20 1 2.0599 -7.2208 0.0358 21 6 0.6624 -8.6279 0.8477 22 7 -0.2156 -8.8393 1.8052 23 14 0.7716 -9.8076 -0.5965 24 1 1.7440 -10.8853 -0.2830 25 1 -0.5642 -10.4047 -0.8500 26 1 1.2218 -9.0707 -1.8046 27 6 1.8750 -5.3836 2.0892 28 1 0.9964 -4.8710 2.4806 29 6 2.1750 -4.8836 0.6747 30 1 -0.3634 -0.0008 1.0277 31 1 -0.3633 0.8904 -0.5131 32 1 -0.3634 -0.8895 -0.5144 33 1 4.5297 -1.3159 0.0090 34 1 4.5543 -3.4298 1.3301 35 1 3.6387 -1.9527 1.7187 36 1 4.1415 -3.3836 3.7404 37 1 2.3983 -3.1258 3.4723 38 1 3.6574 -7.5379 3.8203 39 1 2.6141 -7.4724 5.2603 40 1 0.6255 -7.2100 3.8907 41 1 1.5488 -8.5899 3.2423 42 1 -0.8057 -9.6080 1.7612 43 1 3.0070 -5.4479 0.2537 44 1 1.2926 -5.0055 0.0466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074303889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:04 Heat of formation + Delta-G solvation = 3.479276 kcal Electronic energy + Delta-G solvation = -28307.547378 eV Core-core repulsion = 24454.500797 eV Total energy + Delta-G solvation = -3853.046580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.51988 -41.12859 -39.75292 -37.37685 -36.49455 -33.98483 -33.60448 -33.02773 -31.83841 -30.87760 -29.06192 -28.72844 -26.79585 -25.53909 -24.19436 -23.42446 -22.43579 -21.54481 -21.21577 -20.30058 -18.77448 -18.54520 -17.98647 -17.09250 -16.97648 -16.63634 -16.49723 -16.13236 -15.82302 -15.51311 -15.44787 -15.11036 -14.85891 -14.67417 -14.53859 -14.03563 -13.94164 -13.72431 -13.63958 -13.32058 -13.04619 -12.97595 -12.80799 -12.65277 -12.38550 -12.32984 -12.05569 -11.95614 -11.91814 -11.71927 -11.21351 -10.92115 -10.70525 -10.51520 -10.47606 -9.81642 -9.57874 -8.66728 -7.90951 -5.45209 0.62096 1.11147 1.45355 1.47001 1.55594 1.74109 1.98840 2.24252 2.47935 2.85554 3.25033 3.44761 3.47586 3.77639 3.81704 3.97638 4.04837 4.13919 4.21960 4.24217 4.33452 4.43104 4.51440 4.53432 4.57032 4.59487 4.69029 4.70416 4.84764 4.85659 4.88705 4.95041 5.04862 5.12662 5.15578 5.32351 5.42689 5.50248 5.51904 5.64891 6.29756 6.30238 6.36148 6.43866 6.58886 7.06082 7.23221 7.72168 8.31293 9.14965 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.004141 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.976632 B = 6760.024314 C = 7816.863316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.114 3.886 3 N -0.318 5.318 4 N -0.442 5.442 5 H 0.463 0.537 6 C 0.136 3.864 7 C -0.312 4.312 8 C 0.589 3.411 9 O -0.588 6.588 10 N -0.605 5.605 11 C 0.106 3.894 12 C -0.117 4.117 13 C 0.083 3.917 14 H 0.064 0.936 15 O -0.394 6.394 16 C 0.053 3.947 17 C 0.150 3.850 18 N -0.604 5.604 19 C -0.264 4.264 20 H 0.074 0.926 21 C -0.043 4.043 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.277 1.277 25 H -0.298 1.298 26 H -0.269 1.269 27 C 0.133 3.867 28 H -0.003 1.003 29 C 0.142 3.858 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.234 0.766 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.108 0.892 40 H -0.006 1.006 41 H 0.061 0.939 42 H 0.251 0.749 43 H 0.079 0.921 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.130 17.455 0.849 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 N -0.142 5.142 4 N -0.149 5.149 5 H 0.312 0.688 6 C -0.018 4.018 7 C -0.327 4.327 8 C 0.379 3.621 9 O -0.469 6.469 10 N -0.338 5.338 11 C -0.015 4.015 12 C -0.155 4.155 13 C 0.023 3.977 14 H 0.082 0.918 15 O -0.313 6.313 16 C -0.024 4.024 17 C 0.024 3.976 18 N -0.329 5.329 19 C -0.394 4.394 20 H 0.092 0.908 21 C -0.239 4.239 22 N -0.579 5.579 23 Si 0.794 3.206 24 H -0.204 1.204 25 H -0.225 1.225 26 H -0.193 1.193 27 C 0.026 3.974 28 H 0.015 0.985 29 C 0.019 3.981 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.250 0.750 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.126 0.874 40 H 0.012 0.988 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.547 18.553 0.653 23.585 hybrid contribution -0.736 -2.068 -0.777 2.329 sum 13.810 16.485 -0.125 21.505 Atomic orbital electron populations 1.20317 0.86278 1.03894 1.03736 1.22522 0.97648 0.89179 0.95906 1.77094 0.87746 1.22149 1.27183 1.46094 1.07349 1.05744 1.55710 0.68785 1.23682 0.98524 0.85620 0.94013 1.20087 0.94419 0.92557 1.25684 1.17824 0.81092 0.84707 0.78431 1.90750 1.30043 1.81220 1.44841 1.48154 1.37962 1.06436 1.41210 1.22246 0.90299 1.02164 0.86787 1.21892 1.03818 0.91404 0.98435 1.22518 0.96023 0.95289 0.83833 0.91834 1.87751 1.93321 1.20989 1.29260 1.23152 0.97729 0.80622 1.00919 1.21215 0.93953 0.97300 0.85136 1.44285 1.84741 1.01486 1.02371 1.19404 1.19579 1.09498 0.90913 0.90810 1.25983 0.95016 1.02733 1.00169 1.70180 1.21948 1.29581 1.36190 0.85296 0.76524 0.79178 0.79648 1.20369 1.22468 1.19337 1.21469 0.95393 0.85420 0.95127 0.98516 1.21259 1.00842 0.79732 0.96244 0.89657 0.89196 0.91221 0.74978 0.87545 0.86348 0.86617 0.92475 0.92770 0.87442 0.98772 0.92101 0.94027 0.90322 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.06 10.27 71.24 0.73 -1.33 16 2 C 0.11 2.89 7.26 43.51 0.32 3.20 16 3 N -0.32 -6.83 12.63 -46.68 -0.59 -7.42 16 4 N -0.44 -5.38 7.29 -56.31 -0.41 -5.79 16 5 H 0.46 1.64 8.96 -213.43 -1.91 -0.27 16 6 C 0.14 1.75 9.63 84.28 0.81 2.56 16 7 C -0.31 -7.57 5.20 -20.15 -0.10 -7.68 16 8 C 0.59 19.40 7.44 86.66 0.64 20.04 16 9 O -0.59 -25.45 15.17 -4.03 -0.06 -25.51 16 10 N -0.61 -18.13 2.98 -822.55 -2.45 -20.58 16 11 C 0.11 1.97 5.40 86.44 0.47 2.43 16 12 C -0.12 -2.74 5.82 30.64 0.18 -2.56 16 13 C 0.08 2.77 2.48 30.66 0.08 2.84 16 14 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 15 O -0.39 -14.60 10.49 -148.98 -1.56 -16.16 16 16 C 0.05 2.01 6.95 72.05 0.50 2.51 16 17 C 0.15 7.32 5.37 86.28 0.46 7.79 16 18 N -0.60 -30.75 3.01 -673.87 -2.03 -32.77 16 19 C -0.26 -14.42 8.72 84.03 0.73 -13.69 16 20 H 0.07 3.88 6.42 -2.91 -0.02 3.86 16 21 C -0.04 -2.40 4.97 84.86 0.42 -1.98 16 22 N -0.93 -56.20 11.52 21.65 0.25 -55.95 16 23 Si 0.97 45.17 29.58 68.60 2.03 47.20 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 C 0.13 5.76 3.03 45.05 0.14 5.90 16 28 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 29 C 0.14 5.61 4.56 86.26 0.39 6.01 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.08 6.81 -2.39 -0.02 2.07 16 33 H 0.23 0.76 7.33 -2.91 -0.02 0.74 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.12 1.52 4.83 -2.39 -0.01 1.51 16 36 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.11 3.44 8.14 -2.38 -0.02 3.42 16 40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.06 3.24 6.64 -2.39 -0.02 3.22 16 42 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 43 H 0.08 2.96 7.35 -2.39 -0.02 2.94 16 44 H 0.06 2.83 6.81 -2.39 -0.02 2.81 16 Total: -1.00 -81.64 345.95 0.07 -81.57 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -0.87 Total: 9.37 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: 5.77 Total: 26.05 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -5.23 Total: -122.52 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -1.62 Total: -41.67 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -81.64 0.07 -81.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074303889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.051 kcal (2) G-P(sol) polarization free energy of solvation -81.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds