Wall clock time and date at job start Tue Mar 31 2020 13:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30443 * 125.99006 * 2 1 4 4 N 1.39933 * 108.89671 * 180.25668 * 3 2 1 5 5 H 0.97005 * 125.75390 * 179.77053 * 4 3 2 6 6 C 1.34255 * 108.49229 * 359.75116 * 4 3 2 7 7 C 1.38046 * 107.41919 * 359.97438 * 6 4 3 8 8 C 1.47428 * 126.41729 * 179.97438 * 7 6 4 9 9 O 1.21597 * 119.99971 * 209.34497 * 8 7 6 10 10 N 1.34773 * 119.99841 * 29.35309 * 8 7 6 11 11 C 1.46984 * 120.72439 * 357.51154 * 10 8 7 12 12 C 1.53156 * 108.44518 * 125.48637 * 11 10 8 13 13 C 1.52508 * 109.79810 * 54.52103 * 12 11 10 14 14 H 1.08997 * 108.93322 * 180.33735 * 13 12 11 15 15 O 1.42694 * 110.62626 * 61.30024 * 13 12 11 16 16 C 1.43076 * 113.86694 * 174.63845 * 15 13 12 17 17 C 1.52808 * 109.51543 * 61.51647 * 16 15 13 18 18 N 1.47177 * 108.92682 * 308.65337 * 17 16 15 19 19 C 1.36935 * 121.22468 * 230.90664 * 18 17 16 20 20 H 1.07994 * 120.00028 * 153.11572 * 19 18 17 21 21 C 1.38811 * 119.99899 * 333.11942 * 19 18 17 22 22 N 1.31623 * 120.00372 * 334.54986 * 21 19 18 23 23 Si 1.86801 * 119.99954 * 154.55077 * 21 19 18 24 24 H 1.48494 * 109.47268 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47171 * 300.00145 * 23 21 19 26 26 H 1.48494 * 109.47108 * 59.99733 * 23 21 19 27 27 C 1.47591 * 117.54715 * 50.63858 * 18 17 16 28 28 H 1.09009 * 110.31010 * 186.93045 * 27 18 17 29 29 C 1.46800 * 120.72181 * 177.54105 * 10 8 7 30 30 H 1.09001 * 109.47463 * 270.15110 * 1 2 3 31 31 H 1.09001 * 109.46854 * 30.15460 * 1 2 3 32 32 H 1.08999 * 109.46782 * 150.14670 * 1 2 3 33 33 H 1.08004 * 126.29160 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.64551 * 245.17763 * 11 10 8 35 35 H 1.09002 * 109.63890 * 5.79986 * 11 10 8 36 36 H 1.09004 * 109.41355 * 174.62369 * 12 11 10 37 37 H 1.08996 * 109.41845 * 294.41659 * 12 11 10 38 38 H 1.08999 * 109.47668 * 181.63847 * 16 15 13 39 39 H 1.08994 * 109.47924 * 301.66053 * 16 15 13 40 40 H 1.09002 * 109.53159 * 188.79113 * 17 16 15 41 41 H 1.08998 * 109.44353 * 68.46436 * 17 16 15 42 42 H 0.97000 * 119.99487 * 354.24471 * 22 21 19 43 43 H 1.09005 * 109.52190 * 114.36230 * 29 10 8 44 44 H 1.09002 * 109.51775 * 354.17822 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6441 -0.0059 5 1 4.3842 1.2300 -0.0103 6 6 3.6439 -0.6980 -0.0041 7 6 2.3372 -1.1433 0.0036 8 6 1.8915 -2.5486 0.0076 9 8 0.8299 -2.8511 -0.5023 10 7 2.6606 -3.4978 0.5766 11 6 3.9711 -3.1589 1.1494 12 6 4.0044 -3.6418 2.6024 13 6 3.6598 -5.1263 2.6614 14 1 3.6817 -5.4534 3.7009 15 8 4.6137 -5.8933 1.9281 16 6 4.4265 -7.3075 2.0373 17 6 3.0577 -7.6863 1.4733 18 7 2.0322 -6.8345 2.0968 19 6 0.9104 -7.3754 2.6662 20 1 0.4043 -6.8527 3.4643 21 6 0.4238 -8.5955 2.2175 22 7 0.6794 -8.9947 0.9896 23 14 -0.5939 -9.6710 3.3564 24 1 -0.9894 -10.9119 2.6431 25 1 0.2104 -10.0239 4.5538 26 1 -1.8112 -8.9324 3.7780 27 6 2.2603 -5.3763 2.0912 28 1 1.4979 -4.8718 2.6849 29 6 2.2080 -4.8930 0.6372 30 1 -0.3634 0.0027 1.0276 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8913 -0.5116 33 1 4.5297 -1.3158 -0.0078 34 1 4.7586 -3.6534 0.5807 35 1 4.1160 -2.0789 1.1188 36 1 5.0016 -3.4846 3.0137 37 1 3.2789 -3.0778 3.1885 38 1 5.2070 -7.8218 1.4765 39 1 4.4785 -7.6012 3.0856 40 1 2.8487 -8.7327 1.6959 41 1 3.0546 -7.5320 0.3943 42 1 1.1354 -8.4019 0.3720 43 1 2.8598 -5.5144 0.0231 44 1 1.1848 -4.9603 0.2674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074303890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:08 Heat of formation + Delta-G solvation = 41.139628 kcal Electronic energy + Delta-G solvation = -28503.057550 eV Core-core repulsion = 24651.644045 eV Total energy + Delta-G solvation = -3851.413505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.67420 -39.90692 -38.38329 -35.89832 -34.92670 -33.10575 -32.13040 -31.56527 -30.59323 -29.34716 -28.10074 -27.21794 -25.35055 -23.74056 -23.06741 -22.58642 -21.32349 -20.64269 -19.59633 -18.68860 -17.67395 -17.40515 -16.62080 -15.69448 -15.57443 -15.52546 -15.04780 -14.90934 -14.58564 -14.29838 -13.81132 -13.66362 -13.60602 -13.54008 -13.02430 -12.91669 -12.57820 -12.47516 -12.36662 -12.19969 -11.94359 -11.49635 -11.35857 -11.01113 -10.84789 -10.65723 -10.50895 -10.31978 -10.10473 -9.91916 -9.68215 -9.55976 -9.50745 -9.16036 -8.88972 -8.45052 -8.25960 -6.96016 -6.13729 -3.31539 1.37061 2.10596 2.49636 3.22117 3.48123 3.49021 3.50382 3.68520 4.18300 4.36429 4.42141 4.50015 4.82173 4.95086 5.01282 5.11427 5.17056 5.28762 5.33877 5.39899 5.52825 5.63657 5.65371 5.66038 5.76628 5.88453 5.92673 5.94134 5.95330 6.03408 6.14717 6.20032 6.28998 6.38520 6.55283 6.65901 6.77093 6.86474 6.90710 6.98060 7.36287 7.70710 7.74927 7.88905 8.46862 8.51183 8.97247 9.73784 10.15637 11.14237 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.003967 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.334243 B = 7055.923589 C = 8027.904049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.133 3.867 3 N -0.302 5.302 4 N -0.466 5.466 5 H 0.442 0.558 6 C 0.087 3.913 7 C -0.274 4.274 8 C 0.588 3.412 9 O -0.540 6.540 10 N -0.601 5.601 11 C 0.090 3.910 12 C -0.122 4.122 13 C 0.081 3.919 14 H 0.052 0.948 15 O -0.386 6.386 16 C 0.046 3.954 17 C 0.116 3.884 18 N -0.591 5.591 19 C -0.353 4.353 20 H 0.059 0.941 21 C -0.019 4.019 22 N -0.910 5.910 23 Si 1.065 2.935 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.136 3.864 28 H 0.077 0.923 29 C 0.107 3.893 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.198 0.802 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.027 0.973 42 H 0.270 0.730 43 H 0.065 0.935 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.555 15.838 0.609 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.035 4.035 3 N -0.125 5.125 4 N -0.170 5.170 5 H 0.287 0.713 6 C -0.064 4.064 7 C -0.289 4.289 8 C 0.376 3.624 9 O -0.418 6.418 10 N -0.334 5.334 11 C -0.033 4.033 12 C -0.161 4.161 13 C 0.022 3.978 14 H 0.070 0.930 15 O -0.306 6.306 16 C -0.032 4.032 17 C -0.010 4.010 18 N -0.314 5.314 19 C -0.482 4.482 20 H 0.077 0.923 21 C -0.222 4.222 22 N -0.549 5.549 23 Si 0.895 3.105 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.028 3.972 28 H 0.095 0.905 29 C -0.017 4.017 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.214 0.786 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.334 15.479 0.376 18.079 hybrid contribution 1.230 0.715 0.081 1.425 sum 10.564 16.194 0.457 19.341 Atomic orbital electron populations 1.20400 0.85731 1.04573 1.03569 1.22454 0.97354 0.88616 0.95074 1.77126 0.86325 1.22466 1.26597 1.46113 1.07745 1.05439 1.57752 0.71329 1.23602 0.99342 0.85387 0.98076 1.20376 0.92172 0.94916 1.21476 1.17298 0.83758 0.83340 0.78030 1.90751 1.23101 1.81918 1.45991 1.48059 1.18566 1.09143 1.57615 1.22279 0.85572 1.00979 0.94426 1.21790 1.02474 0.94907 0.96893 1.22216 0.90203 0.90359 0.95037 0.92980 1.87715 1.52655 1.17688 1.72506 1.23082 0.98984 0.80858 1.00243 1.21540 0.86856 0.97379 0.95214 1.44342 1.20383 0.98390 1.68296 1.19951 1.05810 1.07586 1.14819 0.92284 1.25882 0.99696 0.98650 0.97993 1.70794 1.40179 1.40979 1.02976 0.83518 0.75698 0.76443 0.74865 1.21021 1.22037 1.21856 1.21608 0.94579 0.87012 0.94016 0.90507 1.22312 1.01393 0.78430 0.99534 0.90244 0.90818 0.88258 0.78603 0.90542 0.88985 0.90477 0.90381 0.89861 0.93737 0.89505 0.95522 0.91937 0.91660 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.21 36.01 0.37 -0.66 16 2 C 0.13 1.79 7.26 -82.02 -0.60 1.20 16 3 N -0.30 -3.72 12.63 33.90 0.43 -3.29 16 4 N -0.47 -4.04 7.29 30.85 0.22 -3.82 16 5 H 0.44 2.06 8.96 -182.72 -1.64 0.43 16 6 C 0.09 0.82 9.74 -16.56 -0.16 0.66 16 7 C -0.27 -3.73 5.73 -105.07 -0.60 -4.33 16 8 C 0.59 9.98 7.59 -12.52 -0.09 9.89 16 9 O -0.54 -11.19 14.73 5.28 0.08 -11.11 16 10 N -0.60 -9.70 2.96 -174.04 -0.52 -10.21 16 11 C 0.09 1.09 5.39 -3.70 -0.02 1.07 16 12 C -0.12 -1.55 5.82 -26.90 -0.16 -1.71 16 13 C 0.08 1.39 2.73 -26.89 -0.07 1.31 16 14 H 0.05 0.94 8.11 -51.93 -0.42 0.51 16 15 O -0.39 -6.81 9.59 -35.23 -0.34 -7.15 16 16 C 0.05 0.85 6.96 37.06 0.26 1.10 16 17 C 0.12 2.59 4.34 -3.77 -0.02 2.58 16 18 N -0.59 -14.24 2.57 -164.13 -0.42 -14.66 16 19 C -0.35 -9.60 9.58 -15.06 -0.14 -9.74 16 20 H 0.06 1.62 7.95 -52.49 -0.42 1.21 16 21 C -0.02 -0.54 4.70 -17.43 -0.08 -0.62 16 22 N -0.91 -26.66 12.46 55.49 0.69 -25.97 16 23 Si 1.07 24.80 29.99 -169.99 -5.10 19.70 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.14 2.79 3.03 -67.08 -0.20 2.59 16 28 H 0.08 1.66 7.99 -51.92 -0.42 1.25 16 29 C 0.11 2.13 5.62 -3.72 -0.02 2.11 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.40 6.51 -51.93 -0.34 1.06 16 33 H 0.20 1.18 5.90 -52.48 -0.31 0.87 16 34 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 35 H 0.09 0.83 3.26 -51.93 -0.17 0.66 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.04 0.82 8.13 -51.93 -0.42 0.40 16 40 H 0.09 2.16 6.47 -51.93 -0.34 1.82 16 41 H 0.03 0.62 6.84 -51.93 -0.36 0.27 16 42 H 0.27 7.99 6.68 -40.82 -0.27 7.71 16 43 H 0.07 1.36 6.58 -51.93 -0.34 1.02 16 44 H 0.09 2.09 7.01 -51.93 -0.36 1.73 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -34.06 341.28 -8.47 -42.54 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.12 Total: 3.39 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -1.54 Total: 5.44 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.41 Total: -57.95 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.26 Total: -18.26 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.10 Total: 19.70 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.06 -8.47 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074303890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.677 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds