Wall clock time and date at job start Tue Mar 31 2020 13:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30443 * 125.99006 * 2 1 4 4 N 1.39933 * 108.89671 * 180.25668 * 3 2 1 5 5 H 0.97005 * 125.75390 * 179.77053 * 4 3 2 6 6 C 1.34255 * 108.49229 * 359.75116 * 4 3 2 7 7 C 1.38046 * 107.41919 * 359.97438 * 6 4 3 8 8 C 1.47428 * 126.41729 * 179.97438 * 7 6 4 9 9 O 1.21597 * 119.99971 * 209.34497 * 8 7 6 10 10 N 1.34773 * 119.99841 * 29.35309 * 8 7 6 11 11 C 1.46984 * 120.72439 * 357.51154 * 10 8 7 12 12 C 1.53156 * 108.44518 * 125.48637 * 11 10 8 13 13 C 1.52508 * 109.79810 * 54.52103 * 12 11 10 14 14 H 1.08997 * 108.93322 * 180.33735 * 13 12 11 15 15 O 1.42694 * 110.62626 * 61.30024 * 13 12 11 16 16 C 1.43076 * 113.86694 * 174.63845 * 15 13 12 17 17 C 1.52808 * 109.51543 * 61.51647 * 16 15 13 18 18 N 1.47177 * 108.92682 * 308.65337 * 17 16 15 19 19 C 1.36935 * 121.22468 * 230.90664 * 18 17 16 20 20 H 1.07994 * 120.00028 * 153.11572 * 19 18 17 21 21 C 1.38811 * 119.99899 * 333.11942 * 19 18 17 22 22 N 1.31623 * 120.00372 * 334.54986 * 21 19 18 23 23 Si 1.86801 * 119.99954 * 154.55077 * 21 19 18 24 24 H 1.48494 * 109.47268 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47171 * 300.00145 * 23 21 19 26 26 H 1.48494 * 109.47108 * 59.99733 * 23 21 19 27 27 C 1.47591 * 117.54715 * 50.63858 * 18 17 16 28 28 H 1.09009 * 110.31010 * 186.93045 * 27 18 17 29 29 C 1.46800 * 120.72181 * 177.54105 * 10 8 7 30 30 H 1.09001 * 109.47463 * 270.15110 * 1 2 3 31 31 H 1.09001 * 109.46854 * 30.15460 * 1 2 3 32 32 H 1.08999 * 109.46782 * 150.14670 * 1 2 3 33 33 H 1.08004 * 126.29160 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.64551 * 245.17763 * 11 10 8 35 35 H 1.09002 * 109.63890 * 5.79986 * 11 10 8 36 36 H 1.09004 * 109.41355 * 174.62369 * 12 11 10 37 37 H 1.08996 * 109.41845 * 294.41659 * 12 11 10 38 38 H 1.08999 * 109.47668 * 181.63847 * 16 15 13 39 39 H 1.08994 * 109.47924 * 301.66053 * 16 15 13 40 40 H 1.09002 * 109.53159 * 188.79113 * 17 16 15 41 41 H 1.08998 * 109.44353 * 68.46436 * 17 16 15 42 42 H 0.97000 * 119.99487 * 354.24471 * 22 21 19 43 43 H 1.09005 * 109.52190 * 114.36230 * 29 10 8 44 44 H 1.09002 * 109.51775 * 354.17822 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6441 -0.0059 5 1 4.3842 1.2300 -0.0103 6 6 3.6439 -0.6980 -0.0041 7 6 2.3372 -1.1433 0.0036 8 6 1.8915 -2.5486 0.0076 9 8 0.8299 -2.8511 -0.5023 10 7 2.6606 -3.4978 0.5766 11 6 3.9711 -3.1589 1.1494 12 6 4.0044 -3.6418 2.6024 13 6 3.6598 -5.1263 2.6614 14 1 3.6817 -5.4534 3.7009 15 8 4.6137 -5.8933 1.9281 16 6 4.4265 -7.3075 2.0373 17 6 3.0577 -7.6863 1.4733 18 7 2.0322 -6.8345 2.0968 19 6 0.9104 -7.3754 2.6662 20 1 0.4043 -6.8527 3.4643 21 6 0.4238 -8.5955 2.2175 22 7 0.6794 -8.9947 0.9896 23 14 -0.5939 -9.6710 3.3564 24 1 -0.9894 -10.9119 2.6431 25 1 0.2104 -10.0239 4.5538 26 1 -1.8112 -8.9324 3.7780 27 6 2.2603 -5.3763 2.0912 28 1 1.4979 -4.8718 2.6849 29 6 2.2080 -4.8930 0.6372 30 1 -0.3634 0.0027 1.0276 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8913 -0.5116 33 1 4.5297 -1.3158 -0.0078 34 1 4.7586 -3.6534 0.5807 35 1 4.1160 -2.0789 1.1188 36 1 5.0016 -3.4846 3.0137 37 1 3.2789 -3.0778 3.1885 38 1 5.2070 -7.8218 1.4765 39 1 4.4785 -7.6012 3.0856 40 1 2.8487 -8.7327 1.6959 41 1 3.0546 -7.5320 0.3943 42 1 1.1354 -8.4019 0.3720 43 1 2.8598 -5.5144 0.0231 44 1 1.1848 -4.9603 0.2674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074303890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:07 Heat of formation + Delta-G solvation = 15.785954 kcal Electronic energy + Delta-G solvation = -28504.156967 eV Core-core repulsion = 24651.644045 eV Total energy + Delta-G solvation = -3852.512923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.63040 -41.29895 -39.80221 -37.29237 -36.70418 -34.02561 -33.69198 -33.10885 -31.92371 -30.71276 -29.18070 -28.84890 -26.64037 -25.54491 -24.61485 -23.70014 -22.72730 -21.80016 -20.64249 -20.12579 -19.52836 -18.57709 -17.86497 -17.18203 -17.00882 -16.77362 -16.59199 -16.05663 -15.98060 -15.52506 -15.44732 -15.31048 -15.10672 -14.83955 -14.31577 -14.06316 -13.90108 -13.80673 -13.72477 -13.50819 -13.26115 -12.90170 -12.83119 -12.47835 -12.38064 -12.14208 -12.02767 -11.93902 -11.72285 -11.61845 -11.21576 -10.96058 -10.86423 -10.49772 -10.42300 -9.93703 -9.64159 -8.92938 -8.29726 -5.47014 0.50292 1.05194 1.56646 1.63056 1.70306 1.82821 2.01212 2.28400 2.60866 2.79341 3.14111 3.35191 3.39496 3.65338 3.73220 3.91201 3.98678 4.07401 4.10482 4.17587 4.21662 4.32297 4.38998 4.43499 4.45374 4.56721 4.69315 4.70582 4.73614 4.80928 4.84712 4.88749 4.93368 4.95344 5.07736 5.18448 5.23355 5.40598 5.46198 5.75615 6.22457 6.24676 6.30958 6.42297 6.56327 6.92051 7.21079 7.66942 8.10182 8.93305 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.003967 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.334243 B = 7055.923589 C = 8027.904049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.117 3.883 3 N -0.316 5.316 4 N -0.440 5.440 5 H 0.464 0.536 6 C 0.124 3.876 7 C -0.311 4.311 8 C 0.584 3.416 9 O -0.593 6.593 10 N -0.600 5.600 11 C 0.088 3.912 12 C -0.116 4.116 13 C 0.087 3.913 14 H 0.047 0.953 15 O -0.376 6.376 16 C 0.058 3.942 17 C 0.122 3.878 18 N -0.610 5.610 19 C -0.359 4.359 20 H 0.050 0.950 21 C -0.069 4.069 22 N -0.936 5.936 23 Si 1.115 2.885 24 H -0.291 1.291 25 H -0.275 1.275 26 H -0.280 1.280 27 C 0.133 3.867 28 H 0.056 0.944 29 C 0.127 3.873 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.241 0.759 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.009 0.991 42 H 0.253 0.747 43 H 0.053 0.947 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.008 18.144 1.915 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 N -0.140 5.140 4 N -0.147 5.147 5 H 0.313 0.687 6 C -0.029 4.029 7 C -0.326 4.326 8 C 0.375 3.625 9 O -0.474 6.474 10 N -0.332 5.332 11 C -0.033 4.033 12 C -0.154 4.154 13 C 0.028 3.972 14 H 0.065 0.935 15 O -0.295 6.295 16 C -0.020 4.020 17 C -0.003 4.003 18 N -0.334 5.334 19 C -0.489 4.489 20 H 0.068 0.932 21 C -0.266 4.266 22 N -0.577 5.577 23 Si 0.939 3.061 24 H -0.217 1.217 25 H -0.201 1.201 26 H -0.206 1.206 27 C 0.025 3.975 28 H 0.074 0.926 29 C 0.001 3.999 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.256 0.744 34 H 0.109 0.891 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.027 0.973 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.861 17.874 1.705 22.085 hybrid contribution 0.182 0.110 -0.359 0.418 sum 13.043 17.983 1.346 22.256 Atomic orbital electron populations 1.20339 0.86072 1.03989 1.03781 1.22552 0.97770 0.89041 0.95613 1.77091 0.87725 1.22139 1.27024 1.46143 1.07420 1.05690 1.55469 0.68695 1.23999 0.98772 0.85670 0.94478 1.20123 0.94323 0.92636 1.25546 1.17848 0.82978 0.84765 0.76932 1.90724 1.25545 1.82918 1.48253 1.48054 1.20201 1.07151 1.57756 1.22656 0.83298 1.03497 0.93862 1.21847 1.04897 0.90994 0.97640 1.22224 0.87502 0.93384 0.94079 0.93525 1.87733 1.52124 1.17099 1.72574 1.22959 0.96853 0.81643 1.00514 1.21440 0.88987 0.95601 0.94320 1.44557 1.20196 1.00269 1.68403 1.20170 1.06590 1.07808 1.14307 0.93249 1.27212 1.00704 1.00248 0.98444 1.70915 1.42154 1.40841 1.03806 0.82860 0.74989 0.74615 0.73616 1.21670 1.20060 1.20626 1.21743 0.96794 0.84830 0.94086 0.92586 1.21702 0.98449 0.81101 0.98621 0.89703 0.89192 0.90931 0.74367 0.89125 0.85195 0.86396 0.89818 0.86642 0.93453 0.92502 0.97324 0.93686 0.92842 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.09 10.21 71.24 0.73 -1.36 16 2 C 0.12 3.03 7.26 43.52 0.32 3.35 16 3 N -0.32 -6.92 12.63 -46.68 -0.59 -7.51 16 4 N -0.44 -5.62 7.29 -56.32 -0.41 -6.03 16 5 H 0.46 1.80 8.96 -213.42 -1.91 -0.11 16 6 C 0.12 1.74 9.74 84.28 0.82 2.57 16 7 C -0.31 -7.89 5.73 -20.15 -0.12 -8.00 16 8 C 0.58 20.06 7.59 86.66 0.66 20.72 16 9 O -0.59 -26.29 14.73 -4.02 -0.06 -26.35 16 10 N -0.60 -19.03 2.96 -822.80 -2.44 -21.47 16 11 C 0.09 1.75 5.39 86.34 0.47 2.21 16 12 C -0.12 -2.46 5.82 30.48 0.18 -2.28 16 13 C 0.09 2.82 2.73 30.49 0.08 2.90 16 14 H 0.05 1.58 8.11 -2.39 -0.02 1.56 16 15 O -0.38 -12.29 9.59 -148.98 -1.43 -13.72 16 16 C 0.06 2.05 6.96 71.92 0.50 2.55 16 17 C 0.12 5.64 4.34 86.19 0.37 6.02 16 18 N -0.61 -30.64 2.57 -673.19 -1.73 -32.37 16 19 C -0.36 -20.38 9.58 84.03 0.80 -19.58 16 20 H 0.05 2.83 7.95 -2.91 -0.02 2.81 16 21 C -0.07 -3.96 4.70 84.86 0.40 -3.56 16 22 N -0.94 -57.51 12.46 21.65 0.27 -57.24 16 23 Si 1.12 51.29 29.99 68.60 2.06 53.35 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 C 0.13 5.60 3.03 44.95 0.14 5.74 16 28 H 0.06 2.55 7.99 -2.38 -0.02 2.53 16 29 C 0.13 5.29 5.62 86.43 0.49 5.78 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 2.21 6.51 -2.39 -0.02 2.20 16 33 H 0.24 1.21 5.90 -2.91 -0.02 1.19 16 34 H 0.09 1.66 7.95 -2.39 -0.02 1.64 16 35 H 0.13 1.58 3.26 -2.39 -0.01 1.57 16 36 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 39 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 40 H 0.06 2.95 6.47 -2.39 -0.02 2.93 16 41 H 0.01 0.43 6.84 -2.39 -0.02 0.41 16 42 H 0.25 15.99 6.68 -92.71 -0.62 15.37 16 43 H 0.05 2.33 6.58 -2.38 -0.02 2.32 16 44 H 0.04 2.07 7.01 -2.39 -0.02 2.05 16 Total: -1.00 -81.82 341.28 0.79 -81.03 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -0.71 Total: 13.24 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 5.83 Total: 17.06 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -4.90 Total: -124.61 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.49 Total: -40.06 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.06 Total: 53.35 kcal Total: -81.82 0.79 -81.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074303890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.817 kcal (2) G-P(sol) polarization free energy of solvation -81.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds