Wall clock time and date at job start Tue Mar 31 2020 13:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30456 * 125.98735 * 2 1 4 4 N 1.39933 * 108.89368 * 180.26310 * 3 2 1 5 5 H 0.97001 * 125.74888 * 179.73131 * 4 3 2 6 6 C 1.34255 * 108.49648 * 359.73778 * 4 3 2 7 7 C 1.38045 * 107.41816 * 359.97438 * 6 4 3 8 8 C 1.47426 * 126.42152 * 179.97438 * 7 6 4 9 9 O 1.21602 * 120.00528 * 141.89461 * 8 7 6 10 10 N 1.34783 * 119.99873 * 321.90298 * 8 7 6 11 11 C 1.46990 * 120.71825 * 354.64598 * 10 8 7 12 12 C 1.53155 * 108.43775 * 234.57864 * 11 10 8 13 13 C 1.52506 * 109.80156 * 305.47087 * 12 11 10 14 14 H 1.09001 * 108.93348 * 178.98263 * 13 12 11 15 15 O 1.42684 * 110.62677 * 298.68763 * 13 12 11 16 16 C 1.43082 * 113.87994 * 185.34654 * 15 13 12 17 17 C 1.53228 * 109.44512 * 298.35124 * 16 15 13 18 18 N 1.47178 * 108.69497 * 51.58681 * 17 16 15 19 19 C 1.36932 * 121.22649 * 129.03678 * 18 17 16 20 20 H 1.08004 * 120.00454 * 207.36335 * 19 18 17 21 21 C 1.38816 * 119.99852 * 27.35386 * 19 18 17 22 22 N 1.31621 * 119.99629 * 13.86004 * 21 19 18 23 23 Si 1.86800 * 120.00372 * 193.85262 * 21 19 18 24 24 H 1.48497 * 109.47095 * 90.00033 * 23 21 19 25 25 H 1.48493 * 109.47499 * 210.00648 * 23 21 19 26 26 H 1.48505 * 109.46946 * 330.00662 * 23 21 19 27 27 C 1.47602 * 117.55610 * 309.05419 * 18 17 16 28 28 H 1.08998 * 111.15885 * 172.78532 * 27 18 17 29 29 C 1.46784 * 120.72577 * 174.67238 * 10 8 7 30 30 H 1.09002 * 109.47099 * 270.16811 * 1 2 3 31 31 H 1.08997 * 109.47368 * 30.17097 * 1 2 3 32 32 H 1.09003 * 109.47023 * 150.16908 * 1 2 3 33 33 H 1.08003 * 126.29644 * 180.02562 * 6 4 3 34 34 H 1.09003 * 109.63650 * 114.89564 * 11 10 8 35 35 H 1.08991 * 109.81747 * 354.36936 * 11 10 8 36 36 H 1.09002 * 109.41885 * 185.37678 * 12 11 10 37 37 H 1.08999 * 109.41996 * 65.57606 * 12 11 10 38 38 H 1.09000 * 109.47222 * 58.34064 * 16 15 13 39 39 H 1.08993 * 109.47603 * 178.35876 * 16 15 13 40 40 H 1.09007 * 109.59411 * 171.34980 * 17 16 15 41 41 H 1.08995 * 109.59954 * 291.82248 * 17 16 15 42 42 H 0.97003 * 119.99582 * 179.97438 * 22 21 19 43 43 H 1.08994 * 109.52681 * 245.58603 * 29 10 8 44 44 H 1.09009 * 109.51916 * 5.71082 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6110 0.6443 -0.0061 5 1 4.3841 1.2302 -0.0111 6 6 3.6439 -0.6979 -0.0040 7 6 2.3373 -1.1432 0.0040 8 6 1.8915 -2.5485 0.0082 9 8 0.9215 -2.8767 0.6640 10 7 2.5593 -3.4695 -0.7146 11 6 3.6605 -3.0723 -1.6034 12 6 3.3652 -3.6052 -3.0086 13 6 3.1190 -5.1091 -2.9496 14 1 2.8927 -5.4701 -3.9528 15 8 4.2753 -5.7890 -2.4630 16 6 4.1640 -7.2151 -2.4929 17 6 3.0062 -7.6556 -1.5911 18 7 1.8035 -6.8921 -1.9609 19 6 0.6152 -7.5212 -2.2203 20 1 -0.1029 -7.0659 -2.8863 21 6 0.3335 -8.7443 -1.6273 22 7 1.0648 -9.1709 -0.6195 23 14 -1.0835 -9.7846 -2.2593 24 1 -0.5923 -10.6951 -3.3246 25 1 -1.6454 -10.5864 -1.1430 26 1 -2.1391 -8.8990 -2.8131 27 6 1.9252 -5.4234 -2.0424 28 1 1.0166 -4.9749 -2.4442 29 6 2.2023 -4.8908 -0.6317 30 1 -0.3633 0.0030 1.0277 31 1 -0.3634 0.8884 -0.5165 32 1 -0.3633 -0.8915 -0.5112 33 1 4.5298 -1.3157 -0.0071 34 1 4.5962 -3.4969 -1.2397 35 1 3.7383 -1.9855 -1.6326 36 1 4.2159 -3.4027 -3.6592 37 1 2.4801 -3.1085 -3.4059 38 1 3.9739 -7.5434 -3.5148 39 1 5.0927 -7.6597 -2.1351 40 1 2.8200 -8.7207 -1.7291 41 1 3.2586 -7.4581 -0.5493 42 1 0.8677 -10.0255 -0.2049 43 1 3.0268 -5.4483 -0.1874 44 1 1.3104 -5.0071 -0.0159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074303891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:11 Heat of formation + Delta-G solvation = 32.143577 kcal Electronic energy + Delta-G solvation = -28430.104591 eV Core-core repulsion = 24578.300988 eV Total energy + Delta-G solvation = -3851.803603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.57073 -39.78310 -38.25238 -35.70047 -34.63081 -33.08709 -31.97161 -31.49312 -30.49929 -29.25493 -28.07913 -27.30332 -25.14926 -23.87094 -22.87617 -22.46748 -21.31675 -20.49687 -19.46380 -18.56108 -17.58676 -16.94657 -16.53651 -15.51434 -15.46054 -15.34711 -15.06597 -14.79023 -14.58530 -14.32018 -13.94359 -13.59859 -13.45225 -13.12682 -12.91624 -12.86277 -12.61333 -12.32472 -12.28040 -12.17441 -11.92306 -11.33349 -11.06785 -11.02588 -10.89940 -10.75580 -10.59068 -10.22204 -10.15790 -10.00352 -9.65263 -9.59042 -9.54421 -8.98414 -8.81129 -8.58078 -8.17043 -6.73500 -5.84678 -3.30767 1.46145 2.17108 2.54725 3.25022 3.35807 3.42482 3.43853 3.52831 4.32740 4.40987 4.43386 4.54426 4.95525 5.02905 5.06736 5.19704 5.31816 5.38018 5.40435 5.47618 5.64163 5.66439 5.74435 5.78516 5.81908 5.89812 6.02487 6.07301 6.09876 6.16009 6.31600 6.35794 6.40198 6.44172 6.72015 6.79217 6.92963 7.01013 7.10644 7.40775 7.50319 7.71831 7.83185 7.89231 8.32310 8.57929 9.10384 9.71067 10.28723 11.22634 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.003959 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.341966 B = 7071.482351 C = 8040.612688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.129 3.871 3 N -0.302 5.302 4 N -0.466 5.466 5 H 0.442 0.558 6 C 0.097 3.903 7 C -0.273 4.273 8 C 0.587 3.413 9 O -0.538 6.538 10 N -0.602 5.602 11 C 0.107 3.893 12 C -0.122 4.122 13 C 0.081 3.919 14 H 0.051 0.949 15 O -0.388 6.388 16 C 0.039 3.961 17 C 0.138 3.862 18 N -0.584 5.584 19 C -0.254 4.254 20 H 0.069 0.931 21 C 0.006 3.994 22 N -0.902 5.902 23 Si 0.907 3.093 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.278 1.278 27 C 0.135 3.865 28 H 0.075 0.925 29 C 0.108 3.892 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.187 0.813 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.029 0.971 42 H 0.255 0.745 43 H 0.068 0.932 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.010 15.936 -2.478 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.039 4.039 3 N -0.126 5.126 4 N -0.171 5.171 5 H 0.286 0.714 6 C -0.055 4.055 7 C -0.289 4.289 8 C 0.374 3.626 9 O -0.415 6.415 10 N -0.335 5.335 11 C -0.016 4.016 12 C -0.160 4.160 13 C 0.021 3.979 14 H 0.069 0.931 15 O -0.307 6.307 16 C -0.039 4.039 17 C 0.012 3.988 18 N -0.307 5.307 19 C -0.384 4.384 20 H 0.087 0.913 21 C -0.193 4.193 22 N -0.546 5.546 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.203 1.203 27 C 0.026 3.974 28 H 0.093 0.907 29 C -0.016 4.016 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.204 0.796 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.611 16.898 -1.960 19.067 hybrid contribution -0.229 -1.466 -0.330 1.520 sum 8.383 15.432 -2.290 17.711 Atomic orbital electron populations 1.20249 0.85787 1.03452 1.03797 1.22440 0.97272 0.88738 0.95418 1.77118 0.86307 1.22401 1.26748 1.46060 1.07707 1.05397 1.57918 0.71362 1.23217 0.99089 0.85374 0.97816 1.20384 0.92234 0.94916 1.21322 1.17315 0.82555 0.83398 0.79322 1.90781 1.26753 1.80741 1.43246 1.48133 1.34249 1.08202 1.42949 1.21830 0.90257 0.99593 0.89937 1.21783 1.02475 0.94805 0.96986 1.22216 0.87422 0.91093 0.97170 0.93110 1.87700 1.37811 1.19157 1.86068 1.23344 1.00251 0.80276 1.00019 1.21484 0.83932 0.98749 0.94589 1.44269 1.07364 0.98179 1.80858 1.19194 0.95289 1.02588 1.21285 0.91337 1.25092 0.98352 1.00046 0.95797 1.69989 1.41236 1.21180 1.22190 0.86213 0.81937 0.80289 0.77869 1.21416 1.21621 1.20330 1.21592 0.96031 0.86820 0.92963 0.90731 1.22313 1.01878 0.77110 1.00263 0.89785 0.90906 0.89705 0.79571 0.90818 0.90128 0.90603 0.90481 0.94161 0.90188 0.88467 0.95339 0.93446 0.91394 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 9.93 36.00 0.36 -0.53 16 2 C 0.13 1.72 7.26 -82.02 -0.60 1.13 16 3 N -0.30 -3.71 12.63 33.90 0.43 -3.28 16 4 N -0.47 -4.10 7.29 30.85 0.22 -3.88 16 5 H 0.44 2.14 8.96 -182.72 -1.64 0.51 16 6 C 0.10 0.93 9.60 -16.56 -0.16 0.77 16 7 C -0.27 -3.72 5.32 -105.07 -0.56 -4.28 16 8 C 0.59 10.00 7.37 -12.52 -0.09 9.91 16 9 O -0.54 -11.28 15.82 5.28 0.08 -11.20 16 10 N -0.60 -9.79 2.96 -174.05 -0.52 -10.31 16 11 C 0.11 1.33 5.26 -3.69 -0.02 1.31 16 12 C -0.12 -1.59 5.82 -26.90 -0.16 -1.75 16 13 C 0.08 1.39 2.72 -26.88 -0.07 1.31 16 14 H 0.05 0.91 8.12 -51.93 -0.42 0.49 16 15 O -0.39 -6.97 9.59 -35.23 -0.34 -7.31 16 16 C 0.04 0.73 6.98 37.28 0.26 0.99 16 17 C 0.14 3.16 4.91 -3.55 -0.02 3.14 16 18 N -0.58 -14.13 2.71 -163.86 -0.44 -14.57 16 19 C -0.25 -6.81 9.72 -15.06 -0.15 -6.96 16 20 H 0.07 1.82 7.87 -52.48 -0.41 1.41 16 21 C 0.01 0.17 5.02 -17.43 -0.09 0.08 16 22 N -0.90 -25.47 11.04 55.49 0.61 -24.86 16 23 Si 0.91 21.44 29.58 -169.99 -5.03 16.41 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.13 2.76 3.00 -67.07 -0.20 2.56 16 28 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 29 C 0.11 2.17 5.63 -3.73 -0.02 2.15 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.10 7.74 -51.93 -0.40 0.70 16 33 H 0.19 1.20 7.12 -52.48 -0.37 0.83 16 34 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 35 H 0.08 0.80 4.62 -51.93 -0.24 0.56 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.10 2.47 6.11 -51.93 -0.32 2.15 16 41 H 0.03 0.70 7.17 -51.93 -0.37 0.32 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.07 1.44 6.56 -51.93 -0.34 1.10 16 44 H 0.09 2.13 6.99 -51.92 -0.36 1.76 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -33.08 345.88 -8.66 -41.74 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.38 Total: 2.22 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -1.51 Total: 9.83 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.31 Total: -56.90 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.25 Total: -18.51 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.08 -8.66 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074303891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.879 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds