Wall clock time and date at job start Tue Mar 31 2020 13:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30456 * 125.98735 * 2 1 4 4 N 1.39933 * 108.89368 * 180.26310 * 3 2 1 5 5 H 0.97001 * 125.74888 * 179.73131 * 4 3 2 6 6 C 1.34255 * 108.49648 * 359.73778 * 4 3 2 7 7 C 1.38045 * 107.41816 * 359.97438 * 6 4 3 8 8 C 1.47426 * 126.42152 * 179.97438 * 7 6 4 9 9 O 1.21602 * 120.00528 * 141.89461 * 8 7 6 10 10 N 1.34783 * 119.99873 * 321.90298 * 8 7 6 11 11 C 1.46990 * 120.71825 * 354.64598 * 10 8 7 12 12 C 1.53155 * 108.43775 * 234.57864 * 11 10 8 13 13 C 1.52506 * 109.80156 * 305.47087 * 12 11 10 14 14 H 1.09001 * 108.93348 * 178.98263 * 13 12 11 15 15 O 1.42684 * 110.62677 * 298.68763 * 13 12 11 16 16 C 1.43082 * 113.87994 * 185.34654 * 15 13 12 17 17 C 1.53228 * 109.44512 * 298.35124 * 16 15 13 18 18 N 1.47178 * 108.69497 * 51.58681 * 17 16 15 19 19 C 1.36932 * 121.22649 * 129.03678 * 18 17 16 20 20 H 1.08004 * 120.00454 * 207.36335 * 19 18 17 21 21 C 1.38816 * 119.99852 * 27.35386 * 19 18 17 22 22 N 1.31621 * 119.99629 * 13.86004 * 21 19 18 23 23 Si 1.86800 * 120.00372 * 193.85262 * 21 19 18 24 24 H 1.48497 * 109.47095 * 90.00033 * 23 21 19 25 25 H 1.48493 * 109.47499 * 210.00648 * 23 21 19 26 26 H 1.48505 * 109.46946 * 330.00662 * 23 21 19 27 27 C 1.47602 * 117.55610 * 309.05419 * 18 17 16 28 28 H 1.08998 * 111.15885 * 172.78532 * 27 18 17 29 29 C 1.46784 * 120.72577 * 174.67238 * 10 8 7 30 30 H 1.09002 * 109.47099 * 270.16811 * 1 2 3 31 31 H 1.08997 * 109.47368 * 30.17097 * 1 2 3 32 32 H 1.09003 * 109.47023 * 150.16908 * 1 2 3 33 33 H 1.08003 * 126.29644 * 180.02562 * 6 4 3 34 34 H 1.09003 * 109.63650 * 114.89564 * 11 10 8 35 35 H 1.08991 * 109.81747 * 354.36936 * 11 10 8 36 36 H 1.09002 * 109.41885 * 185.37678 * 12 11 10 37 37 H 1.08999 * 109.41996 * 65.57606 * 12 11 10 38 38 H 1.09000 * 109.47222 * 58.34064 * 16 15 13 39 39 H 1.08993 * 109.47603 * 178.35876 * 16 15 13 40 40 H 1.09007 * 109.59411 * 171.34980 * 17 16 15 41 41 H 1.08995 * 109.59954 * 291.82248 * 17 16 15 42 42 H 0.97003 * 119.99582 * 179.97438 * 22 21 19 43 43 H 1.08994 * 109.52681 * 245.58603 * 29 10 8 44 44 H 1.09009 * 109.51916 * 5.71082 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6110 0.6443 -0.0061 5 1 4.3841 1.2302 -0.0111 6 6 3.6439 -0.6979 -0.0040 7 6 2.3373 -1.1432 0.0040 8 6 1.8915 -2.5485 0.0082 9 8 0.9215 -2.8767 0.6640 10 7 2.5593 -3.4695 -0.7146 11 6 3.6605 -3.0723 -1.6034 12 6 3.3652 -3.6052 -3.0086 13 6 3.1190 -5.1091 -2.9496 14 1 2.8927 -5.4701 -3.9528 15 8 4.2753 -5.7890 -2.4630 16 6 4.1640 -7.2151 -2.4929 17 6 3.0062 -7.6556 -1.5911 18 7 1.8035 -6.8921 -1.9609 19 6 0.6152 -7.5212 -2.2203 20 1 -0.1029 -7.0659 -2.8863 21 6 0.3335 -8.7443 -1.6273 22 7 1.0648 -9.1709 -0.6195 23 14 -1.0835 -9.7846 -2.2593 24 1 -0.5923 -10.6951 -3.3246 25 1 -1.6454 -10.5864 -1.1430 26 1 -2.1391 -8.8990 -2.8131 27 6 1.9252 -5.4234 -2.0424 28 1 1.0166 -4.9749 -2.4442 29 6 2.2023 -4.8908 -0.6317 30 1 -0.3633 0.0030 1.0277 31 1 -0.3634 0.8884 -0.5165 32 1 -0.3633 -0.8915 -0.5112 33 1 4.5298 -1.3157 -0.0071 34 1 4.5962 -3.4969 -1.2397 35 1 3.7383 -1.9855 -1.6326 36 1 4.2159 -3.4027 -3.6592 37 1 2.4801 -3.1085 -3.4059 38 1 3.9739 -7.5434 -3.5148 39 1 5.0927 -7.6597 -2.1351 40 1 2.8200 -8.7207 -1.7291 41 1 3.2586 -7.4581 -0.5493 42 1 0.8677 -10.0255 -0.2049 43 1 3.0268 -5.4483 -0.1874 44 1 1.3104 -5.0071 -0.0159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074303891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:10 Heat of formation + Delta-G solvation = 7.939970 kcal Electronic energy + Delta-G solvation = -28431.154138 eV Core-core repulsion = 24578.300988 eV Total energy + Delta-G solvation = -3852.853150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.51952 -41.18150 -39.68813 -37.09912 -36.41532 -33.98524 -33.59587 -33.06140 -31.76170 -30.63526 -29.20811 -28.87981 -26.48326 -25.61510 -24.44187 -23.60217 -22.73496 -21.59938 -20.55227 -19.95306 -18.92621 -18.59295 -17.80489 -17.10005 -16.90414 -16.71340 -16.54379 -16.15064 -15.94010 -15.48187 -15.40541 -15.01007 -14.83294 -14.67835 -14.29971 -13.97252 -13.85507 -13.74247 -13.63406 -13.36078 -13.03283 -13.01981 -12.85690 -12.59685 -12.41620 -12.23269 -12.09852 -11.92778 -11.83484 -11.62474 -11.19715 -10.91851 -10.72646 -10.50352 -10.47224 -9.84407 -9.55067 -8.66958 -7.90838 -5.40086 0.59990 1.11756 1.44759 1.45970 1.54869 1.76982 2.03727 2.28595 2.47857 2.91720 3.24139 3.43949 3.49487 3.76751 3.83182 4.03692 4.07008 4.19281 4.21476 4.24417 4.33697 4.48838 4.52425 4.55974 4.62030 4.66139 4.72525 4.82397 4.86136 4.89028 4.92575 4.95629 5.02031 5.09666 5.27320 5.32676 5.42372 5.52648 5.61806 5.63222 6.28580 6.29052 6.38077 6.49069 6.61328 7.06782 7.26878 7.73003 8.27182 9.13489 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.003959 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.341966 B = 7071.482351 C = 8040.612688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.115 3.885 3 N -0.316 5.316 4 N -0.442 5.442 5 H 0.463 0.537 6 C 0.132 3.868 7 C -0.310 4.310 8 C 0.586 3.414 9 O -0.592 6.592 10 N -0.600 5.600 11 C 0.105 3.895 12 C -0.116 4.116 13 C 0.087 3.913 14 H 0.047 0.953 15 O -0.379 6.379 16 C 0.052 3.948 17 C 0.145 3.855 18 N -0.603 5.603 19 C -0.266 4.266 20 H 0.065 0.935 21 C -0.044 4.044 22 N -0.931 5.931 23 Si 0.969 3.031 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.273 1.273 27 C 0.131 3.869 28 H 0.058 0.942 29 C 0.128 3.872 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.228 0.772 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.003 0.997 42 H 0.252 0.748 43 H 0.054 0.946 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.746 18.331 -4.077 22.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 N -0.140 5.140 4 N -0.149 5.149 5 H 0.312 0.688 6 C -0.022 4.022 7 C -0.325 4.325 8 C 0.376 3.624 9 O -0.473 6.473 10 N -0.332 5.332 11 C -0.016 4.016 12 C -0.154 4.154 13 C 0.027 3.973 14 H 0.065 0.935 15 O -0.298 6.298 16 C -0.026 4.026 17 C 0.019 3.981 18 N -0.326 5.326 19 C -0.396 4.396 20 H 0.082 0.918 21 C -0.240 4.240 22 N -0.577 5.577 23 Si 0.797 3.203 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.198 1.198 27 C 0.023 3.977 28 H 0.077 0.923 29 C 0.003 3.997 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.245 0.755 34 H 0.107 0.893 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.021 0.979 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.403 19.374 -3.597 22.767 hybrid contribution -1.049 -2.121 0.200 2.375 sum 10.354 17.253 -3.397 20.406 Atomic orbital electron populations 1.20212 0.85964 1.03403 1.03630 1.22552 0.97731 0.89040 0.95848 1.77085 0.87644 1.22120 1.27181 1.46089 1.07417 1.05609 1.55740 0.68815 1.23637 0.98588 0.85672 0.94281 1.20119 0.94299 0.92651 1.25420 1.17841 0.81634 0.84773 0.78193 1.90748 1.29297 1.81824 1.45462 1.48112 1.35270 1.06221 1.43585 1.22164 0.89054 1.01808 0.88574 1.21830 1.04410 0.91023 0.98151 1.22225 0.85545 0.94029 0.95466 0.93519 1.87715 1.37611 1.18475 1.86009 1.23169 0.99440 0.80934 0.99034 1.21321 0.85232 0.97168 0.94338 1.44491 1.07127 0.99945 1.81027 1.19462 0.96199 1.03017 1.20941 0.91773 1.25801 1.00825 1.01190 0.96137 1.70145 1.42820 1.21287 1.23418 0.85247 0.79281 0.78650 0.77133 1.20582 1.22158 1.19759 1.21734 0.97376 0.84744 0.93859 0.92325 1.21705 0.99180 0.79884 0.98978 0.90099 0.88942 0.91642 0.75541 0.89343 0.86621 0.86846 0.89910 0.93778 0.87207 0.91406 0.97880 0.93922 0.92746 0.93966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.78 9.93 71.23 0.71 -1.07 16 2 C 0.12 2.93 7.26 43.51 0.32 3.25 16 3 N -0.32 -6.90 12.63 -46.67 -0.59 -7.49 16 4 N -0.44 -5.81 7.29 -56.32 -0.41 -6.22 16 5 H 0.46 2.10 8.96 -213.43 -1.91 0.18 16 6 C 0.13 1.94 9.60 84.28 0.81 2.75 16 7 C -0.31 -7.85 5.32 -20.15 -0.11 -7.95 16 8 C 0.59 20.08 7.37 86.66 0.64 20.71 16 9 O -0.59 -26.34 15.82 -4.04 -0.06 -26.40 16 10 N -0.60 -19.14 2.96 -822.82 -2.44 -21.58 16 11 C 0.11 2.21 5.26 86.34 0.45 2.66 16 12 C -0.12 -2.58 5.82 30.48 0.18 -2.41 16 13 C 0.09 2.83 2.72 30.50 0.08 2.92 16 14 H 0.05 1.59 8.12 -2.39 -0.02 1.57 16 15 O -0.38 -12.68 9.59 -148.98 -1.43 -14.11 16 16 C 0.05 1.88 6.98 72.06 0.50 2.38 16 17 C 0.14 6.84 4.91 86.33 0.42 7.27 16 18 N -0.60 -30.26 2.71 -672.33 -1.82 -32.09 16 19 C -0.27 -14.83 9.72 84.04 0.82 -14.01 16 20 H 0.06 3.54 7.87 -2.91 -0.02 3.51 16 21 C -0.04 -2.44 5.02 84.86 0.43 -2.02 16 22 N -0.93 -54.93 11.04 21.65 0.24 -54.70 16 23 Si 0.97 45.35 29.58 68.60 2.03 47.38 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.13 5.49 3.00 44.95 0.13 5.63 16 28 H 0.06 2.61 8.03 -2.39 -0.02 2.59 16 29 C 0.13 5.35 5.63 86.43 0.49 5.84 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.81 7.74 -2.39 -0.02 1.79 16 33 H 0.23 1.46 7.12 -2.91 -0.02 1.44 16 34 H 0.09 1.69 7.95 -2.39 -0.02 1.67 16 35 H 0.12 1.66 4.62 -2.39 -0.01 1.65 16 36 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.07 3.60 6.11 -2.38 -0.01 3.58 16 41 H 0.00 0.16 7.17 -2.39 -0.02 0.14 16 42 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.05 2.41 6.56 -2.39 -0.02 2.39 16 44 H 0.04 2.15 6.99 -2.38 -0.02 2.13 16 Total: -1.00 -78.18 345.88 0.51 -77.67 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -0.87 Total: 11.58 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 5.87 Total: 25.95 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -5.02 Total: -122.07 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.49 Total: -40.51 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -78.18 0.51 -77.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074303891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.608 kcal (2) G-P(sol) polarization free energy of solvation -78.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds