Wall clock time and date at job start Tue Mar 31 2020 12:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00244 * 2 1 4 4 H 1.09000 * 110.63878 * 26.85383 * 3 2 1 5 5 C 1.54336 * 111.00042 * 263.78013 * 3 2 1 6 6 N 1.47021 * 107.26378 * 219.59922 * 5 3 2 7 7 C 1.36930 * 125.64701 * 178.85098 * 6 5 3 8 8 H 1.08001 * 120.00119 * 189.75453 * 7 6 5 9 9 C 1.38810 * 119.99961 * 9.75277 * 7 6 5 10 10 N 1.31631 * 119.99846 * 195.14253 * 9 7 6 11 11 Si 1.86798 * 120.00326 * 15.13878 * 9 7 6 12 12 H 1.48505 * 109.47267 * 174.49184 * 11 9 7 13 13 H 1.48507 * 109.46844 * 54.49250 * 11 9 7 14 14 H 1.48496 * 109.47237 * 294.49670 * 11 9 7 15 15 C 1.47425 * 108.70462 * 358.58474 * 6 5 3 16 16 C 1.54912 * 104.83156 * 24.35748 * 15 6 5 17 17 H 1.08997 * 111.00807 * 81.06150 * 16 15 6 18 18 N 1.46501 * 111.00340 * 204.87978 * 16 15 6 19 19 C 1.34771 * 119.99686 * 273.54097 * 18 16 15 20 20 O 1.21477 * 120.00028 * 0.02562 * 19 18 16 21 21 C 1.48463 * 119.99993 * 180.02562 * 19 18 16 22 22 C 1.39526 * 120.55093 * 179.72378 * 21 19 18 23 23 C 1.38763 * 118.26390 * 179.80153 * 22 21 19 24 24 C 1.50704 * 120.42501 * 180.23921 * 23 22 21 25 25 N 1.32199 * 119.14599 * 0.47540 * 23 22 21 26 26 C 1.31879 * 121.03523 * 359.74226 * 25 23 22 27 27 C 1.50709 * 119.04237 * 180.02562 * 26 25 23 28 28 N 1.31582 * 121.92010 * 0.02719 * 26 25 23 29 29 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47126 * 300.00482 * 1 2 3 31 31 H 1.09000 * 109.47149 * 59.99836 * 1 2 3 32 32 H 1.09008 * 109.99015 * 100.12321 * 5 3 2 33 33 H 1.08998 * 109.77984 * 338.95447 * 5 3 2 34 34 H 0.96996 * 119.99667 * 2.97181 * 10 9 7 35 35 H 1.08997 * 110.36537 * 143.19228 * 15 6 5 36 36 H 1.08997 * 110.36694 * 265.52137 * 15 6 5 37 37 H 0.97001 * 119.99960 * 93.55138 * 18 16 15 38 38 H 1.08009 * 120.86927 * 359.97438 * 22 21 19 39 39 H 1.09002 * 109.47151 * 270.23451 * 24 23 22 40 40 H 1.08998 * 109.47456 * 30.23479 * 24 23 22 41 41 H 1.08997 * 109.46977 * 150.23992 * 24 23 22 42 42 H 1.09005 * 109.46945 * 270.02490 * 27 26 25 43 43 H 1.09000 * 109.46744 * 30.01896 * 27 26 25 44 44 H 1.08992 * 109.47123 * 150.02468 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4499 -1.3549 7 6 4.3517 2.9803 -2.4155 8 1 5.3619 3.3380 -2.2816 9 6 3.7475 3.0581 -3.6628 10 7 4.4777 3.2811 -4.7351 11 14 1.8982 2.8464 -3.8197 12 1 1.4877 3.1041 -5.2234 13 1 1.2118 3.8070 -2.9189 14 1 1.5249 1.4598 -3.4413 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9171 0.3654 0.5365 18 7 3.2172 1.5207 2.1639 19 6 4.2052 1.1830 3.0160 20 8 5.2323 0.6926 2.5914 21 6 4.0384 1.4104 4.4736 22 6 5.0515 1.0598 5.3666 23 6 4.8470 1.2972 6.7184 24 6 5.9110 0.9425 7.7251 25 7 3.7050 1.8341 7.1124 26 6 2.7660 2.1495 6.2418 27 6 1.4814 2.7599 6.7403 28 7 2.9178 1.9467 4.9506 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6128 2.4181 -1.8233 33 1 2.4707 0.8724 -2.0758 34 1 5.4424 3.3480 -4.6595 35 1 5.1786 2.3788 0.1248 36 1 3.7841 3.4306 0.5171 37 1 2.3971 1.9125 2.5029 38 1 5.9721 0.6179 5.0147 39 1 5.7606 -0.0814 8.0673 40 1 6.8936 1.0299 7.2614 41 1 5.8484 1.6223 8.5747 42 1 0.7645 1.9687 6.9603 43 1 1.6791 3.3332 7.6460 44 1 1.0715 3.4191 5.9752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082233675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:36 Heat of formation + Delta-G solvation = 9.624977 kcal Electronic energy + Delta-G solvation = -27034.285310 eV Core-core repulsion = 23181.505227 eV Total energy + Delta-G solvation = -3852.780083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60488 -39.81868 -38.46875 -36.26658 -35.09251 -34.24508 -33.74729 -32.03399 -29.63219 -29.19916 -28.53807 -28.10679 -26.36605 -25.27129 -23.48209 -22.57319 -21.21076 -20.93747 -20.24155 -18.62689 -17.77032 -17.22839 -16.76937 -16.19270 -15.96033 -15.76285 -15.29381 -14.95702 -14.84614 -14.61010 -14.24207 -14.04317 -13.80687 -13.52221 -13.43876 -13.24687 -12.88096 -12.78835 -12.65938 -12.62087 -12.19376 -11.96883 -11.85007 -11.30232 -11.28039 -11.16883 -10.85357 -10.71953 -10.51603 -10.10000 -9.86684 -9.74490 -9.62746 -9.28832 -9.12709 -8.96427 -8.65187 -7.10509 -6.33725 -3.25407 0.22316 0.55095 2.58147 2.79504 3.38124 3.43797 3.46169 3.48631 3.56496 3.67077 3.79941 4.16136 4.54426 4.56253 4.58983 4.72657 4.93176 5.01685 5.06955 5.08793 5.14667 5.16803 5.19376 5.24918 5.36702 5.39840 5.42686 5.48086 5.50657 5.59818 5.65341 5.74349 5.80257 6.00695 6.14164 6.25645 6.45634 6.48484 6.52427 6.66949 7.32017 7.38151 7.58831 7.67300 8.04240 8.30475 9.01008 9.50742 10.15730 11.17470 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018834 B = 0.003195 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.332348 B = 8761.435903 C = 9465.812786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.073 3.927 4 H 0.075 0.925 5 C 0.095 3.905 6 N -0.606 5.606 7 C -0.323 4.323 8 H 0.082 0.918 9 C -0.021 4.021 10 N -0.926 5.926 11 Si 1.068 2.932 12 H -0.299 1.299 13 H -0.298 1.298 14 H -0.284 1.284 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.111 0.889 18 N -0.691 5.691 19 C 0.570 3.430 20 O -0.517 6.517 21 C 0.145 3.855 22 C -0.178 4.178 23 C 0.179 3.821 24 C -0.107 4.107 25 N -0.509 5.509 26 C 0.320 3.680 27 C -0.085 4.085 28 N -0.501 5.501 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.263 0.737 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.409 0.591 38 H 0.161 0.839 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 -4.531 25.637 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.014 3.986 4 H 0.093 0.907 5 C -0.030 4.030 6 N -0.335 5.335 7 C -0.450 4.450 8 H 0.100 0.900 9 C -0.220 4.220 10 N -0.567 5.567 11 Si 0.902 3.098 12 H -0.227 1.227 13 H -0.227 1.227 14 H -0.211 1.211 15 C 0.004 3.996 16 C 0.027 3.973 17 H 0.129 0.871 18 N -0.341 5.341 19 C 0.352 3.648 20 O -0.392 6.392 21 C -0.003 4.003 22 C -0.201 4.201 23 C 0.032 3.968 24 C -0.164 4.164 25 N -0.226 5.226 26 C 0.053 3.947 27 C -0.143 4.143 28 N -0.219 5.219 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.245 0.755 38 H 0.179 0.821 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.591 -4.613 24.409 25.975 hybrid contribution 1.365 0.109 0.968 1.677 sum -6.226 -4.504 25.377 26.515 Atomic orbital electron populations 1.22809 0.81237 1.02648 1.00039 1.87942 1.19541 1.26881 1.94900 1.23393 0.93699 0.84778 0.96738 0.90714 1.22426 0.89557 0.96619 0.94415 1.44602 1.20791 1.65897 1.02172 1.20185 0.97729 1.39620 0.87429 0.90048 1.25827 1.06615 0.98915 0.90678 1.70898 1.07100 1.50482 1.28212 0.83881 0.75909 0.76194 0.73838 1.22735 1.22711 1.21112 1.21854 0.98471 0.93741 0.85561 1.22477 0.96003 1.01530 0.77301 0.87071 1.45716 1.19246 1.62305 1.06876 1.17734 0.83992 0.79009 0.84020 1.90831 1.27648 1.43394 1.77294 1.21687 0.90008 0.93345 0.95239 1.22806 1.01960 1.01491 0.93825 1.21838 0.92513 0.89638 0.92829 1.20819 0.95027 1.03174 0.97357 1.68054 1.01717 1.12835 1.39973 1.23239 0.95354 0.91690 0.84438 1.20600 0.90297 1.01076 1.02335 1.68176 1.22920 1.13917 1.16908 0.89662 0.94156 0.93745 0.94799 0.91851 0.92725 0.92278 0.95301 0.75530 0.82125 0.89336 0.89646 0.89642 0.89418 0.89430 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.46 16 2 O -0.37 -6.21 10.45 -35.23 -0.37 -6.58 16 3 C 0.07 1.27 3.06 -24.89 -0.08 1.19 16 4 H 0.07 1.12 7.68 -51.93 -0.40 0.72 16 5 C 0.10 2.11 4.40 -3.06 -0.01 2.09 16 6 N -0.61 -15.12 3.33 -170.07 -0.57 -15.69 16 7 C -0.32 -9.38 10.56 -15.06 -0.16 -9.54 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 10 N -0.93 -29.36 13.71 55.49 0.76 -28.60 16 11 Si 1.07 26.78 24.52 -169.99 -4.17 22.61 16 12 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 13 H -0.30 -7.11 6.82 56.52 0.39 -6.72 16 14 H -0.28 -6.54 5.41 56.52 0.31 -6.23 16 15 C 0.13 2.75 6.93 -2.53 -0.02 2.73 16 16 C 0.13 2.36 3.04 -65.78 -0.20 2.16 16 17 H 0.11 2.20 7.73 -51.93 -0.40 1.80 16 18 N -0.69 -10.30 5.22 -52.47 -0.27 -10.57 16 19 C 0.57 8.80 7.83 -12.05 -0.09 8.71 16 20 O -0.52 -9.46 16.17 5.39 0.09 -9.37 16 21 C 0.14 1.90 6.79 -82.64 -0.56 1.34 16 22 C -0.18 -1.99 9.41 -38.91 -0.37 -2.35 16 23 C 0.18 1.75 6.83 -82.24 -0.56 1.18 16 24 C -0.11 -0.63 10.22 36.01 0.37 -0.26 16 25 N -0.51 -5.44 10.25 -7.00 -0.07 -5.51 16 26 C 0.32 3.41 7.64 -157.30 -1.20 2.20 16 27 C -0.08 -0.58 10.32 36.01 0.37 -0.21 16 28 N -0.50 -6.05 9.60 -7.32 -0.07 -6.12 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.77 3.89 -51.92 -0.20 0.57 16 33 H 0.06 1.51 6.62 -51.93 -0.34 1.16 16 34 H 0.26 8.24 8.73 -40.82 -0.36 7.89 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.41 5.24 7.90 -40.82 -0.32 4.92 16 38 H 0.16 1.62 7.74 -52.48 -0.41 1.22 16 39 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -35.23 363.76 -7.11 -42.34 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.41 Total: 2.03 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -1.51 Total: 9.99 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.22 Total: -66.49 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.28 Total: -15.95 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.17 Total: 22.61 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.23 -7.11 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082233675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.960 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds