Wall clock time and date at job start Tue Mar 31 2020 12:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00244 * 2 1 4 4 H 1.09000 * 110.63878 * 26.85383 * 3 2 1 5 5 C 1.54336 * 111.00042 * 263.78013 * 3 2 1 6 6 N 1.47021 * 107.26378 * 219.59922 * 5 3 2 7 7 C 1.36930 * 125.64701 * 178.85098 * 6 5 3 8 8 H 1.08001 * 120.00119 * 189.75453 * 7 6 5 9 9 C 1.38810 * 119.99961 * 9.75277 * 7 6 5 10 10 N 1.31631 * 119.99846 * 195.14253 * 9 7 6 11 11 Si 1.86798 * 120.00326 * 15.13878 * 9 7 6 12 12 H 1.48505 * 109.47267 * 174.49184 * 11 9 7 13 13 H 1.48507 * 109.46844 * 54.49250 * 11 9 7 14 14 H 1.48496 * 109.47237 * 294.49670 * 11 9 7 15 15 C 1.47425 * 108.70462 * 358.58474 * 6 5 3 16 16 C 1.54912 * 104.83156 * 24.35748 * 15 6 5 17 17 H 1.08997 * 111.00807 * 81.06150 * 16 15 6 18 18 N 1.46501 * 111.00340 * 204.87978 * 16 15 6 19 19 C 1.34771 * 119.99686 * 273.54097 * 18 16 15 20 20 O 1.21477 * 120.00028 * 0.02562 * 19 18 16 21 21 C 1.48463 * 119.99993 * 180.02562 * 19 18 16 22 22 C 1.39526 * 120.55093 * 179.72378 * 21 19 18 23 23 C 1.38763 * 118.26390 * 179.80153 * 22 21 19 24 24 C 1.50704 * 120.42501 * 180.23921 * 23 22 21 25 25 N 1.32199 * 119.14599 * 0.47540 * 23 22 21 26 26 C 1.31879 * 121.03523 * 359.74226 * 25 23 22 27 27 C 1.50709 * 119.04237 * 180.02562 * 26 25 23 28 28 N 1.31582 * 121.92010 * 0.02719 * 26 25 23 29 29 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47126 * 300.00482 * 1 2 3 31 31 H 1.09000 * 109.47149 * 59.99836 * 1 2 3 32 32 H 1.09008 * 109.99015 * 100.12321 * 5 3 2 33 33 H 1.08998 * 109.77984 * 338.95447 * 5 3 2 34 34 H 0.96996 * 119.99667 * 2.97181 * 10 9 7 35 35 H 1.08997 * 110.36537 * 143.19228 * 15 6 5 36 36 H 1.08997 * 110.36694 * 265.52137 * 15 6 5 37 37 H 0.97001 * 119.99960 * 93.55138 * 18 16 15 38 38 H 1.08009 * 120.86927 * 359.97438 * 22 21 19 39 39 H 1.09002 * 109.47151 * 270.23451 * 24 23 22 40 40 H 1.08998 * 109.47456 * 30.23479 * 24 23 22 41 41 H 1.08997 * 109.46977 * 150.23992 * 24 23 22 42 42 H 1.09005 * 109.46945 * 270.02490 * 27 26 25 43 43 H 1.09000 * 109.46744 * 30.01896 * 27 26 25 44 44 H 1.08992 * 109.47123 * 150.02468 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4499 -1.3549 7 6 4.3517 2.9803 -2.4155 8 1 5.3619 3.3380 -2.2816 9 6 3.7475 3.0581 -3.6628 10 7 4.4777 3.2811 -4.7351 11 14 1.8982 2.8464 -3.8197 12 1 1.4877 3.1041 -5.2234 13 1 1.2118 3.8070 -2.9189 14 1 1.5249 1.4598 -3.4413 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9171 0.3654 0.5365 18 7 3.2172 1.5207 2.1639 19 6 4.2052 1.1830 3.0160 20 8 5.2323 0.6926 2.5914 21 6 4.0384 1.4104 4.4736 22 6 5.0515 1.0598 5.3666 23 6 4.8470 1.2972 6.7184 24 6 5.9110 0.9425 7.7251 25 7 3.7050 1.8341 7.1124 26 6 2.7660 2.1495 6.2418 27 6 1.4814 2.7599 6.7403 28 7 2.9178 1.9467 4.9506 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6128 2.4181 -1.8233 33 1 2.4707 0.8724 -2.0758 34 1 5.4424 3.3480 -4.6595 35 1 5.1786 2.3788 0.1248 36 1 3.7841 3.4306 0.5171 37 1 2.3971 1.9125 2.5029 38 1 5.9721 0.6179 5.0147 39 1 5.7606 -0.0814 8.0673 40 1 6.8936 1.0299 7.2614 41 1 5.8484 1.6223 8.5747 42 1 0.7645 1.9687 6.9603 43 1 1.6791 3.3332 7.6460 44 1 1.0715 3.4191 5.9752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082233675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:35 Heat of formation + Delta-G solvation = -18.124461 kcal Electronic energy + Delta-G solvation = -27035.488616 eV Core-core repulsion = 23181.505227 eV Total energy + Delta-G solvation = -3853.983389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.47538 -41.13414 -39.83782 -37.74661 -36.09157 -35.55950 -34.61903 -34.04603 -30.88691 -30.19045 -29.74382 -29.21530 -27.52059 -26.56778 -25.06183 -23.27654 -22.85632 -22.32197 -21.72913 -19.91364 -19.45383 -18.48003 -18.07394 -17.65312 -16.87719 -16.70306 -16.45878 -16.26550 -16.06699 -15.73877 -15.73137 -15.38267 -15.07128 -14.95973 -14.49058 -14.27680 -14.12988 -13.82134 -13.66059 -13.37429 -13.35721 -13.22011 -13.10712 -13.07479 -12.47000 -12.36001 -12.09342 -11.85501 -11.72059 -11.65821 -11.57494 -11.22332 -10.99503 -10.68688 -10.53630 -10.50320 -10.26358 -9.21251 -8.71748 -5.55478 -0.71060 -0.22536 1.36590 1.46810 1.48205 1.58261 1.71212 2.50929 2.53240 2.59332 2.61594 2.84599 3.04558 3.22709 3.24951 3.50151 3.62981 3.66185 3.81851 3.84693 4.11971 4.21579 4.27061 4.32794 4.42305 4.55117 4.61180 4.66761 4.69669 4.69796 4.74434 4.74522 4.81255 4.84468 4.86995 4.88833 5.15159 5.15513 5.36261 5.44666 5.69101 6.00819 6.12019 6.21879 6.72964 6.80752 6.89954 7.32315 7.96481 8.81188 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018834 B = 0.003195 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.332348 B = 8761.435903 C = 9465.812786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.391 6.391 3 C 0.091 3.909 4 H 0.112 0.888 5 C 0.087 3.913 6 N -0.625 5.625 7 C -0.318 4.318 8 H 0.046 0.954 9 C -0.077 4.077 10 N -0.959 5.959 11 Si 1.107 2.893 12 H -0.308 1.308 13 H -0.273 1.273 14 H -0.252 1.252 15 C 0.131 3.869 16 C 0.148 3.852 17 H 0.089 0.911 18 N -0.679 5.679 19 C 0.570 3.430 20 O -0.553 6.553 21 C 0.127 3.873 22 C -0.184 4.184 23 C 0.183 3.817 24 C -0.105 4.105 25 N -0.516 5.516 26 C 0.312 3.688 27 C -0.082 4.082 28 N -0.509 5.509 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.248 0.752 35 H 0.035 0.965 36 H 0.045 0.955 37 H 0.422 0.578 38 H 0.166 0.834 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.322 -4.965 28.868 30.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.310 6.310 3 C 0.032 3.968 4 H 0.129 0.871 5 C -0.038 4.038 6 N -0.354 5.354 7 C -0.446 4.446 8 H 0.064 0.936 9 C -0.270 4.270 10 N -0.603 5.603 11 Si 0.933 3.067 12 H -0.237 1.237 13 H -0.200 1.200 14 H -0.177 1.177 15 C 0.004 3.996 16 C 0.042 3.958 17 H 0.107 0.893 18 N -0.330 5.330 19 C 0.355 3.645 20 O -0.430 6.430 21 C -0.020 4.020 22 C -0.207 4.207 23 C 0.035 3.965 24 C -0.161 4.161 25 N -0.233 5.233 26 C 0.045 3.955 27 C -0.140 4.140 28 N -0.228 5.228 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.261 0.739 38 H 0.183 0.817 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.525 -5.052 27.714 30.072 hybrid contribution 2.371 0.225 0.092 2.383 sum -8.154 -4.827 27.806 29.376 Atomic orbital electron populations 1.23151 0.78703 1.04534 1.01447 1.87936 1.22290 1.25979 1.94773 1.23148 0.93871 0.86284 0.93478 0.87080 1.22564 0.88072 0.95587 0.97602 1.44587 1.22063 1.66034 1.02725 1.20055 0.96723 1.38673 0.89132 0.93570 1.27247 1.10642 0.98782 0.90358 1.71013 1.06354 1.53447 1.29479 0.83463 0.70846 0.78501 0.73870 1.23732 1.19954 1.17714 1.21921 0.97597 0.95916 0.84154 1.21975 0.96141 0.98784 0.78936 0.89332 1.45493 1.19830 1.62279 1.05390 1.18119 0.83272 0.77957 0.85176 1.90810 1.29015 1.44934 1.78229 1.21365 0.91471 0.95292 0.93822 1.22968 1.01777 1.01595 0.94395 1.22428 0.92957 0.88191 0.92903 1.20962 0.94375 1.04148 0.96664 1.68196 1.02054 1.13048 1.39952 1.23988 0.96491 0.91089 0.83966 1.20745 0.88805 1.01584 1.02906 1.68162 1.22465 1.14396 1.17770 0.87728 0.91498 0.93520 0.94014 0.93809 0.94334 0.94639 0.93764 0.73915 0.81681 0.87725 0.88216 0.88816 0.87907 0.88254 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.85 113.37 1.23 1.58 16 2 O -0.39 -11.82 10.45 -148.98 -1.56 -13.38 16 3 C 0.09 2.94 3.06 31.79 0.10 3.04 16 4 H 0.11 2.80 7.68 -2.39 -0.02 2.79 16 5 C 0.09 3.69 4.40 86.73 0.38 4.07 16 6 N -0.63 -31.43 3.33 -691.97 -2.30 -33.73 16 7 C -0.32 -19.12 10.56 84.03 0.89 -18.24 16 8 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 9 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 10 N -0.96 -63.11 13.71 21.65 0.30 -62.81 16 11 Si 1.11 53.46 24.52 68.60 1.68 55.14 16 12 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 13 H -0.27 -11.96 6.82 99.48 0.68 -11.28 16 14 H -0.25 -10.84 5.41 99.48 0.54 -10.30 16 15 C 0.13 5.53 6.93 86.86 0.60 6.13 16 16 C 0.15 5.18 3.04 46.38 0.14 5.32 16 17 H 0.09 3.55 7.73 -2.39 -0.02 3.53 16 18 N -0.68 -19.29 5.22 -438.24 -2.29 -21.58 16 19 C 0.57 17.41 7.83 86.97 0.68 18.09 16 20 O -0.55 -20.64 16.17 -3.64 -0.06 -20.70 16 21 C 0.13 3.20 6.79 41.99 0.29 3.48 16 22 C -0.18 -3.92 9.41 22.71 0.21 -3.70 16 23 C 0.18 3.20 6.83 42.63 0.29 3.49 16 24 C -0.10 -0.95 10.22 71.24 0.73 -0.22 16 25 N -0.52 -9.83 10.25 -176.06 -1.81 -11.64 16 26 C 0.31 5.91 7.64 138.79 1.06 6.97 16 27 C -0.08 -0.88 10.32 71.24 0.73 -0.15 16 28 N -0.51 -11.35 9.60 -177.07 -1.70 -13.05 16 29 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.03 8.11 -2.39 -0.02 1.01 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 1.76 3.89 -2.38 -0.01 1.75 16 33 H 0.04 2.03 6.62 -2.39 -0.02 2.02 16 34 H 0.25 16.43 8.73 -92.71 -0.81 15.62 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.42 9.72 7.90 -92.71 -0.73 8.99 16 38 H 0.17 3.25 7.74 -2.91 -0.02 3.23 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.10 0.64 8.10 -2.39 -0.02 0.62 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -80.01 363.76 0.12 -79.89 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.06 Total: 16.25 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 7.80 Total: 25.61 kcal Atomic # 7 Polarization: -135.01 SS G_CDS: -7.80 Total: -142.81 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.62 Total: -34.08 kcal Atomic # 14 Polarization: 53.46 SS G_CDS: 1.68 Total: 55.14 kcal Total: -80.01 0.12 -79.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082233675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.764 kcal (2) G-P(sol) polarization free energy of solvation -80.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds