Wall clock time and date at job start Tue Mar 31 2020 13:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32218 * 120.50686 * 2 1 4 4 C 1.31909 * 121.13978 * 180.02562 * 3 2 1 5 5 N 1.31758 * 122.19710 * 359.97438 * 4 3 2 6 6 C 1.32738 * 120.86959 * 359.77459 * 5 4 3 7 7 O 1.35283 * 120.61710 * 180.23694 * 6 5 4 8 8 C 1.39766 * 120.51144 * 180.02562 * 2 1 3 9 9 C 1.47533 * 120.97647 * 359.94926 * 8 2 1 10 10 O 1.21588 * 120.00025 * 90.00234 * 9 8 2 11 11 N 1.34784 * 120.00117 * 270.00199 * 9 8 2 12 12 C 1.46493 * 119.99864 * 179.72963 * 11 9 8 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 H 1.09008 * 110.43249 * 307.53620 * 13 12 11 15 15 C 1.54886 * 110.48686 * 70.22193 * 13 12 11 16 16 C 1.54893 * 102.74928 * 156.62623 * 15 13 12 17 17 C 1.54268 * 104.19169 * 322.05722 * 16 15 13 18 18 H 1.09000 * 110.07311 * 142.92174 * 17 16 15 19 19 N 1.46510 * 110.03132 * 264.32697 * 17 16 15 20 20 C 1.36942 * 119.99546 * 272.16837 * 19 17 16 21 21 H 1.07994 * 119.99958 * 359.97438 * 20 19 17 22 22 C 1.38809 * 119.99284 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00595 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99602 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47001 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46964 * 120.00278 * 24 22 20 27 27 H 1.48496 * 109.47593 * 240.00117 * 24 22 20 28 28 C 1.53874 * 106.60040 * 23.60980 * 17 16 15 29 29 H 1.09002 * 109.46631 * 269.97476 * 1 2 3 30 30 H 1.08999 * 109.47194 * 29.97153 * 1 2 3 31 31 H 1.08994 * 109.47167 * 149.98048 * 1 2 3 32 32 H 1.08008 * 118.90027 * 180.02562 * 4 3 2 33 33 H 0.96695 * 114.00191 * 270.24596 * 7 6 5 34 34 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 35 35 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 36 36 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 37 37 H 1.09006 * 110.75346 * 274.93017 * 15 13 12 38 38 H 1.08994 * 110.75692 * 38.30734 * 15 13 12 39 39 H 1.08997 * 110.48670 * 203.37830 * 16 15 13 40 40 H 1.08999 * 110.59945 * 80.78295 * 16 15 13 41 41 H 0.96992 * 120.00181 * 92.16943 * 19 17 16 42 42 H 0.97002 * 120.00397 * 180.02562 * 23 22 20 43 43 H 1.08999 * 110.03039 * 240.71689 * 28 17 16 44 44 H 1.08998 * 110.03193 * 119.28803 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 -0.0005 5 7 4.2115 0.0466 -0.0005 6 6 3.6234 -1.1434 0.0044 7 8 4.3618 -2.2769 0.0092 8 6 2.2166 -1.2041 -0.0005 9 6 1.5124 -2.5005 0.0000 10 8 1.2214 -3.0348 -1.0528 11 7 1.1915 -3.0927 1.1675 12 6 0.4870 -4.3771 1.1680 13 6 0.2452 -4.8256 2.6107 14 1 1.1779 -4.8124 3.1747 15 6 -0.8146 -3.9222 3.2888 16 6 -1.3619 -4.8275 4.4202 17 6 -1.4054 -6.2352 3.7906 18 1 -1.1317 -6.9854 4.5324 19 7 -2.7469 -6.5108 3.2700 20 6 -3.6995 -7.0579 4.0877 21 1 -3.4617 -7.2865 5.1161 22 6 -4.9706 -7.3186 3.5947 23 7 -5.2602 -7.0405 2.3412 24 14 -6.2699 -8.0655 4.7098 25 1 -5.6961 -8.2824 6.0622 26 1 -7.4291 -7.1424 4.8066 27 1 -6.7175 -9.3649 4.1473 28 6 -0.3836 -6.2339 2.6401 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 4.0087 2.1050 -0.0001 33 1 4.5797 -2.6081 -0.8728 34 1 1.4234 -2.6663 2.0073 35 1 -0.4696 -4.2670 0.6570 36 1 1.0910 -5.1232 0.6516 37 1 -0.3511 -3.0260 3.7014 38 1 -1.6058 -3.6608 2.5863 39 1 -2.3625 -4.5094 4.7129 40 1 -0.6917 -4.8147 5.2797 41 1 -2.9603 -6.3059 2.3463 42 1 -6.1486 -7.2223 1.9968 43 1 -0.8858 -6.4384 1.6945 44 1 0.3865 -6.9830 2.8239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086783413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:29 Heat of formation + Delta-G solvation = -27.151017 kcal Electronic energy + Delta-G solvation = -26536.475822 eV Core-core repulsion = 22682.101013 eV Total energy + Delta-G solvation = -3854.374809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.83155 -39.68682 -38.25318 -38.10755 -35.01162 -34.65285 -33.34766 -32.39819 -30.69765 -29.34956 -28.82127 -27.37759 -25.71452 -24.04250 -23.28889 -23.17356 -21.17319 -20.01338 -19.37809 -19.24406 -18.52632 -17.95301 -17.11683 -16.84784 -16.35515 -15.68344 -15.22564 -15.03639 -14.75621 -14.58840 -14.36196 -13.82085 -13.73015 -13.37485 -13.27042 -13.22586 -13.04007 -12.68436 -12.50270 -12.24069 -11.73773 -11.44093 -11.23922 -10.89860 -10.83277 -10.77658 -10.62577 -10.53351 -10.33021 -10.27550 -10.14537 -9.93916 -9.89218 -9.84756 -9.64064 -9.23015 -8.89803 -6.94634 -5.77346 -3.05619 0.10895 0.40745 2.17451 2.75531 2.84357 3.17461 3.42206 3.48110 3.49388 3.50208 3.75326 4.24924 4.46133 4.58127 4.67195 4.80423 4.86345 4.91576 5.05389 5.13451 5.23735 5.46973 5.51648 5.53332 5.67417 5.69227 5.76308 5.87070 5.96085 6.02432 6.07383 6.16627 6.27239 6.31265 6.32368 6.43971 6.63253 6.71863 6.80779 6.89126 7.07662 7.20900 7.49137 7.71015 7.87218 8.41959 9.52757 10.12022 10.45946 11.45307 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.002422 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.083700 B =11557.754282 C =11896.383905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.230 3.770 3 N -0.525 5.525 4 C 0.336 3.664 5 N -0.543 5.543 6 C 0.399 3.601 7 O -0.470 6.470 8 C -0.251 4.251 9 C 0.576 3.424 10 O -0.527 6.527 11 N -0.709 5.709 12 C 0.125 3.875 13 C -0.104 4.104 14 H 0.075 0.925 15 C -0.113 4.113 16 C -0.146 4.146 17 C 0.174 3.826 18 H 0.048 0.952 19 N -0.721 5.721 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.121 4.121 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.207 0.793 33 H 0.415 0.585 34 H 0.401 0.599 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.073 0.927 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.916 15.343 -4.226 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.084 3.916 3 N -0.241 5.241 4 C 0.049 3.951 5 N -0.268 5.268 6 C 0.211 3.789 7 O -0.278 6.278 8 C -0.261 4.261 9 C 0.359 3.641 10 O -0.404 6.404 11 N -0.359 5.359 12 C 0.002 3.998 13 C -0.123 4.123 14 H 0.094 0.906 15 C -0.151 4.151 16 C -0.187 4.187 17 C 0.064 3.936 18 H 0.066 0.934 19 N -0.362 5.362 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.160 4.160 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.223 0.777 33 H 0.277 0.723 34 H 0.236 0.764 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.034 15.640 -4.263 25.001 hybrid contribution -0.869 -0.942 0.251 1.306 sum 18.165 14.698 -4.012 23.708 Atomic orbital electron populations 1.20982 0.86631 1.05243 1.04721 1.21883 0.97904 0.85909 0.85865 1.68335 1.10171 1.29379 1.16239 1.25017 0.86271 0.96145 0.87713 1.68076 1.42635 0.98680 1.17390 1.19388 0.85493 0.86005 0.88021 1.84622 1.72494 1.35898 1.34832 1.21819 0.95052 0.97006 1.12176 1.17521 0.78680 0.83382 0.84505 1.90860 1.53909 1.64508 1.31103 1.46024 1.58555 1.23359 1.07933 1.21639 0.97065 0.83279 0.97772 1.22249 0.99119 0.97217 0.93699 0.90641 1.22505 0.97372 0.96754 0.98420 1.23118 1.00797 0.98340 0.96420 1.20799 0.85998 0.93634 0.93177 0.93360 1.42553 1.06757 1.74614 1.12261 1.19298 0.91060 1.32803 0.93760 0.91185 1.24736 0.97724 1.02261 0.96302 1.69665 1.20843 1.54045 1.13535 0.86151 0.82000 0.78564 0.79682 1.20602 1.21934 1.21910 1.22466 0.98434 0.94111 1.00970 0.88497 0.88781 0.89381 0.77666 0.72319 0.76445 0.90552 0.91219 0.93059 0.91206 0.90931 0.93328 0.78270 0.93581 0.90839 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.85 36.01 0.35 -0.61 16 2 C 0.23 2.23 6.86 -81.86 -0.56 1.67 16 3 N -0.53 -4.89 10.36 -10.52 -0.11 -5.00 16 4 C 0.34 2.71 12.27 -92.09 -1.13 1.58 16 5 N -0.54 -5.27 10.45 -14.32 -0.15 -5.42 16 6 C 0.40 4.02 7.85 -16.19 -0.13 3.89 16 7 O -0.47 -4.18 13.10 -17.54 -0.23 -4.41 16 8 C -0.25 -2.62 5.67 -104.56 -0.59 -3.22 16 9 C 0.58 6.88 5.51 -12.47 -0.07 6.81 16 10 O -0.53 -8.13 17.11 5.29 0.09 -8.04 16 11 N -0.71 -7.49 5.44 -61.35 -0.33 -7.83 16 12 C 0.13 1.51 4.96 -4.04 -0.02 1.49 16 13 C -0.10 -1.27 2.89 -88.96 -0.26 -1.53 16 14 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 15 C -0.11 -1.53 6.19 -24.74 -0.15 -1.68 16 16 C -0.15 -2.41 6.54 -25.07 -0.16 -2.58 16 17 C 0.17 3.28 3.55 -66.81 -0.24 3.04 16 18 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 19 N -0.72 -17.43 5.08 -52.34 -0.27 -17.69 16 20 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 24 Si 0.90 22.19 29.55 -169.99 -5.02 17.16 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 C -0.12 -1.84 6.14 -25.62 -0.16 -1.99 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.82 7.18 -51.93 -0.37 0.44 16 32 H 0.21 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.42 1.98 9.06 45.56 0.41 2.40 16 34 H 0.40 3.56 8.42 -40.82 -0.34 3.21 16 35 H 0.08 1.05 8.02 -51.93 -0.42 0.63 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.06 7.96 -51.93 -0.41 0.64 16 39 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.38 9.89 7.52 -40.82 -0.31 9.58 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.07 1.22 7.31 -51.93 -0.38 0.84 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -33.87 371.99 -8.64 -42.50 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.59 Total: 10.48 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -3.36 Total: -0.24 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.13 Total: -63.06 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.14 Total: -12.45 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.87 -8.64 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086783413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.353 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds