Wall clock time and date at job start Tue Mar 31 2020 13:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32218 * 120.50686 * 2 1 4 4 C 1.31909 * 121.13978 * 180.02562 * 3 2 1 5 5 N 1.31758 * 122.19710 * 359.97438 * 4 3 2 6 6 C 1.32738 * 120.86959 * 359.77459 * 5 4 3 7 7 O 1.35283 * 120.61710 * 180.23694 * 6 5 4 8 8 C 1.39766 * 120.51144 * 180.02562 * 2 1 3 9 9 C 1.47533 * 120.97647 * 359.94926 * 8 2 1 10 10 O 1.21588 * 120.00025 * 90.00234 * 9 8 2 11 11 N 1.34784 * 120.00117 * 270.00199 * 9 8 2 12 12 C 1.46493 * 119.99864 * 179.72963 * 11 9 8 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 H 1.09008 * 110.43249 * 307.53620 * 13 12 11 15 15 C 1.54886 * 110.48686 * 70.22193 * 13 12 11 16 16 C 1.54893 * 102.74928 * 156.62623 * 15 13 12 17 17 C 1.54268 * 104.19169 * 322.05722 * 16 15 13 18 18 H 1.09000 * 110.07311 * 142.92174 * 17 16 15 19 19 N 1.46510 * 110.03132 * 264.32697 * 17 16 15 20 20 C 1.36942 * 119.99546 * 272.16837 * 19 17 16 21 21 H 1.07994 * 119.99958 * 359.97438 * 20 19 17 22 22 C 1.38809 * 119.99284 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00595 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99602 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47001 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46964 * 120.00278 * 24 22 20 27 27 H 1.48496 * 109.47593 * 240.00117 * 24 22 20 28 28 C 1.53874 * 106.60040 * 23.60980 * 17 16 15 29 29 H 1.09002 * 109.46631 * 269.97476 * 1 2 3 30 30 H 1.08999 * 109.47194 * 29.97153 * 1 2 3 31 31 H 1.08994 * 109.47167 * 149.98048 * 1 2 3 32 32 H 1.08008 * 118.90027 * 180.02562 * 4 3 2 33 33 H 0.96695 * 114.00191 * 270.24596 * 7 6 5 34 34 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 35 35 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 36 36 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 37 37 H 1.09006 * 110.75346 * 274.93017 * 15 13 12 38 38 H 1.08994 * 110.75692 * 38.30734 * 15 13 12 39 39 H 1.08997 * 110.48670 * 203.37830 * 16 15 13 40 40 H 1.08999 * 110.59945 * 80.78295 * 16 15 13 41 41 H 0.96992 * 120.00181 * 92.16943 * 19 17 16 42 42 H 0.97002 * 120.00397 * 180.02562 * 23 22 20 43 43 H 1.08999 * 110.03039 * 240.71689 * 28 17 16 44 44 H 1.08998 * 110.03193 * 119.28803 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 -0.0005 5 7 4.2115 0.0466 -0.0005 6 6 3.6234 -1.1434 0.0044 7 8 4.3618 -2.2769 0.0092 8 6 2.2166 -1.2041 -0.0005 9 6 1.5124 -2.5005 0.0000 10 8 1.2214 -3.0348 -1.0528 11 7 1.1915 -3.0927 1.1675 12 6 0.4870 -4.3771 1.1680 13 6 0.2452 -4.8256 2.6107 14 1 1.1779 -4.8124 3.1747 15 6 -0.8146 -3.9222 3.2888 16 6 -1.3619 -4.8275 4.4202 17 6 -1.4054 -6.2352 3.7906 18 1 -1.1317 -6.9854 4.5324 19 7 -2.7469 -6.5108 3.2700 20 6 -3.6995 -7.0579 4.0877 21 1 -3.4617 -7.2865 5.1161 22 6 -4.9706 -7.3186 3.5947 23 7 -5.2602 -7.0405 2.3412 24 14 -6.2699 -8.0655 4.7098 25 1 -5.6961 -8.2824 6.0622 26 1 -7.4291 -7.1424 4.8066 27 1 -6.7175 -9.3649 4.1473 28 6 -0.3836 -6.2339 2.6401 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 4.0087 2.1050 -0.0001 33 1 4.5797 -2.6081 -0.8728 34 1 1.4234 -2.6663 2.0073 35 1 -0.4696 -4.2670 0.6570 36 1 1.0910 -5.1232 0.6516 37 1 -0.3511 -3.0260 3.7014 38 1 -1.6058 -3.6608 2.5863 39 1 -2.3625 -4.5094 4.7129 40 1 -0.6917 -4.8147 5.2797 41 1 -2.9603 -6.3059 2.3463 42 1 -6.1486 -7.2223 1.9968 43 1 -0.8858 -6.4384 1.6945 44 1 0.3865 -6.9830 2.8239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086783413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:29 Heat of formation + Delta-G solvation = -54.284335 kcal Electronic energy + Delta-G solvation = -26537.652411 eV Core-core repulsion = 22682.101013 eV Total energy + Delta-G solvation = -3855.551398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.55119 -40.65428 -39.42506 -38.87035 -36.32944 -35.37099 -34.95649 -33.21921 -32.38899 -30.42095 -29.72933 -28.80452 -26.64574 -25.47404 -24.73252 -23.96627 -22.11429 -21.14407 -20.70068 -20.03922 -19.24573 -19.17373 -18.80306 -17.65446 -17.23058 -16.69761 -16.60971 -16.13039 -15.81817 -15.77609 -15.33124 -15.15175 -15.02205 -14.51667 -14.34825 -14.20428 -13.91038 -13.75386 -13.51529 -13.16770 -13.12813 -12.97819 -12.52401 -12.48575 -12.33406 -12.10742 -11.97595 -11.72669 -11.61748 -11.51290 -11.49566 -11.40354 -11.10923 -10.89492 -10.68727 -10.55742 -10.20224 -8.94695 -7.92285 -5.19276 -0.57889 -0.29420 1.25969 1.47343 1.47503 1.57421 1.96155 2.11505 2.47612 2.57536 2.87296 3.10006 3.39109 3.45122 3.67433 3.74663 3.81262 3.85963 4.05851 4.18777 4.22073 4.42224 4.52846 4.54695 4.59062 4.60520 4.69822 4.80088 4.84882 4.88319 4.93575 5.09247 5.14268 5.15259 5.23465 5.25668 5.46027 5.52243 5.59058 5.63830 5.67746 6.27055 6.31636 6.33294 6.82661 6.98405 7.36481 8.16746 8.37434 9.31504 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.002422 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.083700 B =11557.754282 C =11896.383905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.229 3.771 3 N -0.534 5.534 4 C 0.340 3.660 5 N -0.555 5.555 6 C 0.400 3.600 7 O -0.477 6.477 8 C -0.265 4.265 9 C 0.583 3.417 10 O -0.568 6.568 11 N -0.696 5.696 12 C 0.133 3.867 13 C -0.085 4.085 14 H 0.106 0.894 15 C -0.106 4.106 16 C -0.140 4.140 17 C 0.162 3.838 18 H 0.042 0.958 19 N -0.734 5.734 20 C -0.233 4.233 21 H 0.074 0.926 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.968 3.032 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.296 1.296 28 C -0.116 4.116 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.244 0.756 33 H 0.431 0.569 34 H 0.413 0.587 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.053 0.947 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.956 16.660 -2.873 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.083 3.917 3 N -0.250 5.250 4 C 0.054 3.946 5 N -0.281 5.281 6 C 0.212 3.788 7 O -0.289 6.289 8 C -0.275 4.275 9 C 0.367 3.633 10 O -0.447 6.447 11 N -0.346 5.346 12 C 0.010 3.990 13 C -0.104 4.104 14 H 0.124 0.876 15 C -0.143 4.143 16 C -0.180 4.180 17 C 0.053 3.947 18 H 0.060 0.940 19 N -0.374 5.374 20 C -0.365 4.365 21 H 0.092 0.908 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.798 3.202 25 H -0.190 1.190 26 H -0.223 1.223 27 H -0.223 1.223 28 C -0.155 4.155 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.259 0.741 33 H 0.295 0.705 34 H 0.250 0.750 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 21.136 16.972 -2.855 27.257 hybrid contribution -1.396 -1.318 -0.146 1.926 sum 19.740 15.654 -3.001 25.372 Atomic orbital electron populations 1.21004 0.85973 1.04976 1.05467 1.22087 0.98484 0.85883 0.85239 1.68426 1.10793 1.28944 1.16878 1.25807 0.86027 0.97053 0.85682 1.68190 1.42828 0.98860 1.18207 1.19488 0.85422 0.86486 0.87421 1.84571 1.72295 1.35696 1.36322 1.21656 0.95263 0.96283 1.14256 1.17689 0.77984 0.83611 0.84011 1.90839 1.55602 1.65720 1.32535 1.45861 1.57757 1.22698 1.08292 1.21418 0.96229 0.83990 0.97398 1.22109 0.99637 0.94691 0.93926 0.87583 1.22446 0.97179 0.97718 0.96971 1.22953 0.99844 0.97001 0.98192 1.21133 0.84324 0.94776 0.94449 0.93954 1.42762 1.08465 1.74643 1.11508 1.19664 0.91658 1.31107 0.94097 0.90785 1.25509 0.99958 1.03953 0.97684 1.69819 1.20916 1.56172 1.15294 0.85140 0.79282 0.77212 0.78567 1.19046 1.22291 1.22310 1.22366 0.97888 0.96805 0.98423 0.87182 0.87746 0.90893 0.74061 0.70488 0.75016 0.92719 0.91291 0.89692 0.93428 0.94237 0.90639 0.79704 0.94220 0.92825 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.85 71.24 0.70 -1.09 16 2 C 0.23 4.13 6.86 42.87 0.29 4.42 16 3 N -0.53 -8.87 10.36 -187.20 -1.94 -10.81 16 4 C 0.34 4.65 12.27 180.86 2.22 6.87 16 5 N -0.56 -9.65 10.45 -312.04 -3.26 -12.91 16 6 C 0.40 7.44 7.85 85.19 0.67 8.11 16 7 O -0.48 -7.78 13.10 -85.68 -1.12 -8.90 16 8 C -0.27 -5.23 5.67 -19.83 -0.11 -5.34 16 9 C 0.58 13.50 5.51 86.69 0.48 13.98 16 10 O -0.57 -17.64 17.11 -3.99 -0.07 -17.71 16 11 N -0.70 -13.59 5.44 -466.26 -2.54 -16.13 16 12 C 0.13 3.06 4.96 86.38 0.43 3.49 16 13 C -0.08 -1.88 2.89 -9.72 -0.03 -1.91 16 14 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 15 C -0.11 -2.64 6.19 31.89 0.20 -2.45 16 16 C -0.14 -4.42 6.54 31.67 0.21 -4.21 16 17 C 0.16 5.99 3.55 45.71 0.16 6.15 16 18 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 19 N -0.73 -36.19 5.08 -319.49 -1.62 -37.81 16 20 C -0.23 -12.81 9.96 84.03 0.84 -11.98 16 21 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 22 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 23 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 24 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 28 C -0.12 -3.40 6.14 31.32 0.19 -3.21 16 29 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.35 7.18 -2.39 -0.02 1.34 16 32 H 0.24 1.19 8.06 -2.91 -0.02 1.16 16 33 H 0.43 3.61 9.06 -74.06 -0.67 2.94 16 34 H 0.41 6.16 8.42 -92.71 -0.78 5.38 16 35 H 0.05 1.53 8.02 -2.38 -0.02 1.51 16 36 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.05 1.42 7.96 -2.39 -0.02 1.40 16 39 H 0.04 1.51 8.04 -2.39 -0.02 1.49 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.37 19.88 7.52 -92.71 -0.70 19.18 16 42 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 43 H 0.05 1.80 7.31 -2.39 -0.02 1.79 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -74.60 371.99 -2.62 -77.22 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -1.09 Total: 29.38 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.71 Total: 8.77 kcal Atomic # 7 Polarization: -127.95 SS G_CDS: -9.08 Total: -137.03 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -1.19 Total: -26.61 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -74.60 -2.62 -77.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086783413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.932 kcal (2) G-P(sol) polarization free energy of solvation -74.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds