Wall clock time and date at job start Tue Mar 31 2020 12:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99536 * 2 1 4 4 H 1.48500 * 109.47438 * 269.99919 * 3 2 1 5 5 H 1.48502 * 109.47044 * 30.00043 * 3 2 1 6 6 H 1.48503 * 109.47177 * 149.99801 * 3 2 1 7 7 C 1.38812 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99658 * 180.02562 * 7 2 1 9 9 N 1.36928 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99676 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.48393 * 325.02750 * 10 9 7 12 12 C 1.52879 * 109.48059 * 205.00061 * 10 9 7 13 13 C 1.53969 * 109.71303 * 167.11875 * 12 10 9 14 14 C 1.52450 * 110.73030 * 315.64529 * 13 12 10 15 15 C 1.53798 * 109.41903 * 113.73350 * 14 13 12 16 16 C 1.52334 * 109.16303 * 282.12779 * 15 14 13 17 17 N 1.46957 * 109.08992 * 72.70458 * 16 15 14 18 18 C 1.34772 * 120.35178 * 68.37575 * 17 16 15 19 19 O 1.21599 * 119.99514 * 184.59356 * 18 17 16 20 20 C 1.47569 * 120.00378 * 4.31954 * 18 17 16 21 21 C 1.38057 * 119.73072 * 186.59317 * 20 18 17 22 22 N 1.34867 * 119.95061 * 179.74044 * 21 20 18 23 23 H 0.96999 * 120.31366 * 180.25354 * 22 21 20 24 24 C 1.34959 * 119.38321 * 0.52698 * 22 21 20 25 25 O 1.21866 * 120.27361 * 179.71746 * 24 22 21 26 26 C 1.41785 * 119.45857 * 359.74954 * 24 22 21 27 27 N 1.30598 * 120.03769 * 359.97298 * 26 24 22 28 28 C 1.45334 * 119.29135 * 248.65446 * 17 16 15 29 29 H 0.97000 * 120.00300 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00479 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.43244 * 47.03990 * 12 10 9 32 32 H 1.09004 * 109.42825 * 287.18689 * 12 10 9 33 33 H 1.09001 * 109.22251 * 195.32787 * 13 12 10 34 34 H 1.08999 * 109.22864 * 75.96886 * 13 12 10 35 35 H 1.09000 * 109.48013 * 353.74794 * 14 13 12 36 36 H 1.08999 * 109.48291 * 233.72242 * 14 13 12 37 37 H 1.09001 * 109.52246 * 162.21997 * 15 14 13 38 38 H 1.09004 * 109.52346 * 42.03794 * 15 14 13 39 39 H 1.09001 * 109.53261 * 312.81902 * 16 15 14 40 40 H 1.09007 * 109.53278 * 192.58680 * 16 15 14 41 41 H 1.07997 * 120.01966 * 359.97438 * 21 20 18 42 42 H 1.08006 * 119.98134 * 180.02562 * 26 24 22 43 43 H 1.09000 * 109.67660 * 162.80182 * 28 17 16 44 44 H 1.09003 * 109.67374 * 283.34133 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9688 -3.5502 -0.5913 12 6 1.1816 -4.7511 -0.6106 13 6 2.0379 -5.9946 -0.9125 14 6 3.3543 -5.5966 -1.5705 15 6 4.5197 -5.9244 -0.6220 16 6 4.5997 -4.8552 0.4601 17 7 3.4811 -5.0342 1.3962 18 6 3.4365 -6.1104 2.2063 19 8 2.4682 -6.2958 2.9181 20 6 4.5600 -7.0670 2.2250 21 6 4.4518 -8.2359 2.9514 22 7 5.4739 -9.1158 2.9674 23 1 5.4021 -9.9404 3.4730 24 6 6.5996 -8.8356 2.2777 25 8 7.5350 -9.6167 2.2851 26 6 6.6854 -7.6248 1.5451 27 7 5.6803 -6.7909 1.5404 28 6 2.4204 -4.0414 1.4348 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 0.7348 -4.3854 -1.5351 32 1 0.3922 -5.0165 0.0927 33 1 1.4875 -6.6555 -1.5820 34 1 2.2470 -6.5212 0.0187 35 1 3.3466 -4.5271 -1.7809 36 1 3.4769 -6.1494 -2.5018 37 1 5.4530 -5.9436 -1.1848 38 1 4.3514 -6.8976 -0.1608 39 1 4.5375 -3.8679 0.0023 40 1 5.5434 -4.9503 0.9974 41 1 3.5480 -8.4474 3.5034 42 1 7.5821 -7.3922 0.9899 43 1 1.5457 -4.4580 1.9342 44 1 2.7643 -3.1576 1.9723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088370527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:22 Heat of formation + Delta-G solvation = 14.285114 kcal Electronic energy + Delta-G solvation = -28259.581391 eV Core-core repulsion = 24407.003387 eV Total energy + Delta-G solvation = -3852.578004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.18282 -40.22519 -38.02274 -37.43142 -35.80864 -34.61364 -33.76633 -32.22754 -30.77802 -29.88002 -27.22784 -26.35264 -25.63707 -24.79699 -23.66076 -22.53312 -21.47439 -20.88103 -19.06850 -18.74370 -18.32690 -17.22019 -17.16587 -16.38248 -16.37202 -15.84884 -15.54821 -15.13409 -14.77528 -14.34425 -14.20602 -14.07495 -13.84387 -13.46809 -13.14659 -12.97582 -12.74018 -12.40762 -12.37633 -12.21856 -11.77365 -11.45290 -11.29139 -11.22860 -10.85517 -10.76846 -10.59664 -10.40000 -10.24865 -10.15508 -10.09402 -9.73233 -9.63001 -9.44641 -8.94897 -8.72238 -8.11326 -6.99023 -5.79207 -3.08752 0.09678 0.90725 2.10328 2.69255 3.17234 3.42343 3.45943 3.47761 3.49277 3.79967 3.84953 4.30051 4.57320 4.59667 4.84646 4.99823 5.16871 5.20430 5.40626 5.46834 5.51155 5.61560 5.69487 5.73872 5.81066 5.92280 5.93156 5.98341 6.02943 6.15250 6.20708 6.28812 6.36282 6.40174 6.51930 6.61363 6.68060 6.82739 6.83512 7.05179 7.14697 7.28752 7.66772 7.67735 8.29981 8.39108 9.50256 10.06972 10.41590 11.43047 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.003393 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.191630 B = 8250.297531 C = 8410.779675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.719 5.719 10 C 0.158 3.842 11 H 0.068 0.932 12 C -0.123 4.123 13 C -0.112 4.112 14 C -0.132 4.132 15 C -0.119 4.119 16 C 0.105 3.895 17 N -0.573 5.573 18 C 0.579 3.421 19 O -0.552 6.552 20 C -0.068 4.068 21 C 0.169 3.831 22 N -0.587 5.587 23 H 0.424 0.576 24 C 0.477 3.523 25 O -0.527 6.527 26 C 0.031 3.969 27 N -0.355 5.355 28 C 0.087 3.913 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.189 0.811 42 H 0.193 0.807 43 H 0.081 0.919 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.696 -18.625 2.501 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.047 3.953 11 H 0.085 0.915 12 C -0.161 4.161 13 C -0.150 4.150 14 C -0.169 4.169 15 C -0.157 4.157 16 C -0.018 4.018 17 N -0.303 5.303 18 C 0.365 3.635 19 O -0.432 6.432 20 C -0.192 4.192 21 C 0.033 3.967 22 N -0.220 5.220 23 H 0.264 0.736 24 C 0.273 3.727 25 O -0.402 6.402 26 C -0.159 4.159 27 N -0.070 5.070 28 C -0.038 4.038 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.206 0.794 42 H 0.210 0.790 43 H 0.099 0.901 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.766 -18.125 2.402 21.218 hybrid contribution -0.028 -0.178 0.738 0.760 sum 10.739 -18.303 3.140 21.452 Atomic orbital electron populations 1.69663 1.05133 1.25735 1.57262 1.24749 0.95478 0.97705 1.02759 0.86219 0.78698 0.83914 0.77508 1.21708 1.21814 1.20708 1.19212 0.90947 0.84009 1.43154 0.91133 1.42416 1.05896 0.99555 1.88107 1.20840 0.95744 0.86405 0.92279 0.91471 1.22021 0.98141 0.94993 1.00987 1.21631 0.95810 0.97689 0.99883 1.21915 0.94576 1.02664 0.97740 1.22023 0.98295 0.98827 0.96595 1.22013 0.89838 0.99293 0.90652 1.47670 1.24043 1.21992 1.36599 1.17178 0.84622 0.80966 0.80711 1.90796 1.33425 1.75365 1.43577 1.20602 0.96324 0.97050 1.05175 1.23208 0.92126 0.88167 0.93224 1.43671 1.14557 1.21334 1.42441 0.73612 1.18830 0.82120 0.90177 0.81570 1.91003 1.35636 1.50436 1.63159 1.24885 0.99754 0.89872 1.01361 1.68404 0.98426 1.29005 1.11175 1.22622 0.89619 0.89827 1.01716 0.93454 0.78127 0.91784 0.92466 0.93252 0.92502 0.90266 0.92842 0.91323 0.92335 0.89801 0.88347 0.79399 0.79020 0.90071 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.41 9.88 -15.06 -0.15 -6.56 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.25 5.13 -53.46 -0.27 -17.53 16 10 C 0.16 2.96 2.29 -67.96 -0.16 2.80 16 11 H 0.07 1.24 3.29 -51.93 -0.17 1.07 16 12 C -0.12 -2.06 5.21 -26.29 -0.14 -2.19 16 13 C -0.11 -1.56 5.40 -26.51 -0.14 -1.70 16 14 C -0.13 -1.66 5.49 -26.60 -0.15 -1.80 16 15 C -0.12 -1.33 4.55 -26.66 -0.12 -1.45 16 16 C 0.10 1.32 4.88 -4.13 -0.02 1.30 16 17 N -0.57 -8.48 1.69 -175.82 -0.30 -8.78 16 18 C 0.58 8.27 6.14 -12.46 -0.08 8.20 16 19 O -0.55 -9.30 15.72 5.28 0.08 -9.22 16 20 C -0.07 -0.73 5.64 -83.11 -0.47 -1.20 16 21 C 0.17 1.26 10.77 -16.28 -0.18 1.08 16 22 N -0.59 -3.73 5.28 -14.19 -0.08 -3.81 16 23 H 0.42 1.51 8.92 -40.82 -0.36 1.14 16 24 C 0.48 4.31 7.74 -14.82 -0.11 4.20 16 25 O -0.53 -6.41 17.95 5.04 0.09 -6.32 16 26 C 0.03 0.26 11.23 -16.72 -0.19 0.07 16 27 N -0.35 -3.45 4.59 -9.34 -0.04 -3.49 16 28 C 0.09 1.57 5.60 -4.64 -0.03 1.54 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.98 7.85 -51.93 -0.41 0.58 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.82 5.38 -51.93 -0.28 0.54 16 35 H 0.08 1.13 5.47 -51.93 -0.28 0.84 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.67 5.28 -51.93 -0.27 0.40 16 39 H 0.08 1.16 6.07 -51.93 -0.32 0.85 16 40 H 0.10 1.14 5.90 -51.93 -0.31 0.84 16 41 H 0.19 1.05 7.59 -52.49 -0.40 0.65 16 42 H 0.19 1.15 8.06 -52.48 -0.42 0.73 16 43 H 0.08 1.58 6.74 -51.93 -0.35 1.23 16 44 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -33.07 339.75 -7.26 -40.33 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.55 Total: 9.75 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -2.02 Total: 3.90 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.04 Total: -60.38 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.17 Total: -15.54 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.07 -7.26 -40.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088370527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.619 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds