Wall clock time and date at job start Tue Mar 31 2020 12:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99536 * 2 1 4 4 H 1.48500 * 109.47438 * 269.99919 * 3 2 1 5 5 H 1.48502 * 109.47044 * 30.00043 * 3 2 1 6 6 H 1.48503 * 109.47177 * 149.99801 * 3 2 1 7 7 C 1.38812 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99658 * 180.02562 * 7 2 1 9 9 N 1.36928 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99676 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.48393 * 325.02750 * 10 9 7 12 12 C 1.52879 * 109.48059 * 205.00061 * 10 9 7 13 13 C 1.53969 * 109.71303 * 167.11875 * 12 10 9 14 14 C 1.52450 * 110.73030 * 315.64529 * 13 12 10 15 15 C 1.53798 * 109.41903 * 113.73350 * 14 13 12 16 16 C 1.52334 * 109.16303 * 282.12779 * 15 14 13 17 17 N 1.46957 * 109.08992 * 72.70458 * 16 15 14 18 18 C 1.34772 * 120.35178 * 68.37575 * 17 16 15 19 19 O 1.21599 * 119.99514 * 184.59356 * 18 17 16 20 20 C 1.47569 * 120.00378 * 4.31954 * 18 17 16 21 21 C 1.38057 * 119.73072 * 186.59317 * 20 18 17 22 22 N 1.34867 * 119.95061 * 179.74044 * 21 20 18 23 23 H 0.96999 * 120.31366 * 180.25354 * 22 21 20 24 24 C 1.34959 * 119.38321 * 0.52698 * 22 21 20 25 25 O 1.21866 * 120.27361 * 179.71746 * 24 22 21 26 26 C 1.41785 * 119.45857 * 359.74954 * 24 22 21 27 27 N 1.30598 * 120.03769 * 359.97298 * 26 24 22 28 28 C 1.45334 * 119.29135 * 248.65446 * 17 16 15 29 29 H 0.97000 * 120.00300 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00479 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.43244 * 47.03990 * 12 10 9 32 32 H 1.09004 * 109.42825 * 287.18689 * 12 10 9 33 33 H 1.09001 * 109.22251 * 195.32787 * 13 12 10 34 34 H 1.08999 * 109.22864 * 75.96886 * 13 12 10 35 35 H 1.09000 * 109.48013 * 353.74794 * 14 13 12 36 36 H 1.08999 * 109.48291 * 233.72242 * 14 13 12 37 37 H 1.09001 * 109.52246 * 162.21997 * 15 14 13 38 38 H 1.09004 * 109.52346 * 42.03794 * 15 14 13 39 39 H 1.09001 * 109.53261 * 312.81902 * 16 15 14 40 40 H 1.09007 * 109.53278 * 192.58680 * 16 15 14 41 41 H 1.07997 * 120.01966 * 359.97438 * 21 20 18 42 42 H 1.08006 * 119.98134 * 180.02562 * 26 24 22 43 43 H 1.09000 * 109.67660 * 162.80182 * 28 17 16 44 44 H 1.09003 * 109.67374 * 283.34133 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9688 -3.5502 -0.5913 12 6 1.1816 -4.7511 -0.6106 13 6 2.0379 -5.9946 -0.9125 14 6 3.3543 -5.5966 -1.5705 15 6 4.5197 -5.9244 -0.6220 16 6 4.5997 -4.8552 0.4601 17 7 3.4811 -5.0342 1.3962 18 6 3.4365 -6.1104 2.2063 19 8 2.4682 -6.2958 2.9181 20 6 4.5600 -7.0670 2.2250 21 6 4.4518 -8.2359 2.9514 22 7 5.4739 -9.1158 2.9674 23 1 5.4021 -9.9404 3.4730 24 6 6.5996 -8.8356 2.2777 25 8 7.5350 -9.6167 2.2851 26 6 6.6854 -7.6248 1.5451 27 7 5.6803 -6.7909 1.5404 28 6 2.4204 -4.0414 1.4348 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 0.7348 -4.3854 -1.5351 32 1 0.3922 -5.0165 0.0927 33 1 1.4875 -6.6555 -1.5820 34 1 2.2470 -6.5212 0.0187 35 1 3.3466 -4.5271 -1.7809 36 1 3.4769 -6.1494 -2.5018 37 1 5.4530 -5.9436 -1.1848 38 1 4.3514 -6.8976 -0.1608 39 1 4.5375 -3.8679 0.0023 40 1 5.5434 -4.9503 0.9974 41 1 3.5480 -8.4474 3.5034 42 1 7.5821 -7.3922 0.9899 43 1 1.5457 -4.4580 1.9342 44 1 2.7643 -3.1576 1.9723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088370527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:21 Heat of formation + Delta-G solvation = -8.630990 kcal Electronic energy + Delta-G solvation = -28260.575108 eV Core-core repulsion = 24407.003387 eV Total energy + Delta-G solvation = -3853.571721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.92597 -41.34709 -39.08430 -38.45907 -36.75969 -35.98614 -34.97503 -33.90201 -31.68618 -31.43760 -28.61505 -27.52533 -26.40183 -26.01617 -25.06308 -23.74108 -22.75903 -21.87547 -20.29893 -19.50100 -19.27864 -19.15027 -18.01337 -17.59248 -17.14652 -16.90458 -16.76181 -16.37768 -15.82368 -15.61477 -15.46341 -15.26478 -15.04016 -14.74175 -14.60771 -14.09070 -13.98466 -13.70333 -13.50185 -13.03019 -12.96642 -12.91270 -12.81658 -12.63491 -12.34055 -12.22068 -12.09253 -11.80483 -11.70292 -11.47579 -11.35380 -11.20939 -11.12357 -10.79430 -10.29323 -9.60311 -9.28121 -8.93131 -7.90985 -5.20168 -0.52922 0.11319 1.45971 1.50443 1.51555 1.59617 1.77192 2.10279 2.59527 2.62714 3.00923 3.16294 3.42643 3.56429 3.83070 3.86845 3.93289 4.09819 4.19818 4.23921 4.32300 4.39778 4.47219 4.62702 4.69899 4.74449 4.84055 4.92867 4.96325 5.03241 5.12690 5.20207 5.28027 5.30900 5.33195 5.41619 5.45106 5.46246 5.52901 5.62193 5.77812 6.30283 6.38223 6.53708 6.61760 7.16785 7.36608 8.10762 8.34417 9.32508 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.003393 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.191630 B = 8250.297531 C = 8410.779675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.733 5.733 10 C 0.159 3.841 11 H 0.077 0.923 12 C -0.117 4.117 13 C -0.103 4.103 14 C -0.130 4.130 15 C -0.109 4.109 16 C 0.105 3.895 17 N -0.577 5.577 18 C 0.579 3.421 19 O -0.584 6.584 20 C -0.093 4.093 21 C 0.202 3.798 22 N -0.570 5.570 23 H 0.441 0.559 24 C 0.479 3.521 25 O -0.557 6.557 26 C 0.039 3.961 27 N -0.363 5.363 28 C 0.105 3.895 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.114 0.886 41 H 0.211 0.789 42 H 0.215 0.785 43 H 0.062 0.938 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.119 -20.628 2.258 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.193 1.193 7 C -0.366 4.366 8 H 0.098 0.902 9 N -0.372 5.372 10 C 0.051 3.949 11 H 0.095 0.905 12 C -0.155 4.155 13 C -0.142 4.142 14 C -0.167 4.167 15 C -0.147 4.147 16 C -0.017 4.017 17 N -0.307 5.307 18 C 0.368 3.632 19 O -0.466 6.466 20 C -0.216 4.216 21 C 0.065 3.935 22 N -0.203 5.203 23 H 0.283 0.717 24 C 0.275 3.725 25 O -0.435 6.435 26 C -0.151 4.151 27 N -0.078 5.078 28 C -0.021 4.021 29 H 0.058 0.942 30 H 0.203 0.797 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.132 0.868 41 H 0.227 0.773 42 H 0.232 0.768 43 H 0.080 0.920 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.248 -20.192 2.164 24.247 hybrid contribution -0.746 0.291 0.868 1.181 sum 12.502 -19.901 3.032 23.697 Atomic orbital electron populations 1.69825 1.06678 1.25919 1.59678 1.25534 0.96266 1.01011 1.03908 0.85196 0.77778 0.79742 0.77400 1.21376 1.22724 1.19268 1.19603 0.91467 0.84901 1.40666 0.90247 1.42624 1.05460 1.00895 1.88226 1.21013 0.95967 0.85034 0.92935 0.90524 1.21926 0.98025 0.95669 0.99896 1.21578 0.96290 0.96082 1.00200 1.21897 0.94264 1.01680 0.98889 1.21961 0.98773 0.98173 0.95793 1.22166 0.89534 0.99114 0.90838 1.47624 1.23710 1.21699 1.37658 1.17605 0.85166 0.80903 0.79571 1.90775 1.35045 1.76149 1.44649 1.20040 0.95940 0.97650 1.07970 1.23319 0.92407 0.86735 0.91075 1.43560 1.13535 1.21607 1.41562 0.71656 1.18965 0.82071 0.90028 0.81411 1.91004 1.36823 1.51412 1.64235 1.25181 0.99885 0.89107 1.00953 1.68272 0.98453 1.29501 1.11613 1.22025 0.90075 0.89753 1.00213 0.94169 0.79727 0.92787 0.93574 0.91777 0.92880 0.92113 0.90846 0.88836 0.91937 0.91358 0.86836 0.77276 0.76810 0.91955 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 2 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.55 29.55 68.60 2.03 47.57 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.23 -12.63 9.88 84.03 0.83 -11.80 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.73 -36.34 5.13 -323.04 -1.66 -38.00 16 10 C 0.16 6.11 2.29 44.97 0.10 6.21 16 11 H 0.08 2.84 3.29 -2.39 -0.01 2.83 16 12 C -0.12 -3.96 5.21 30.88 0.16 -3.80 16 13 C -0.10 -2.74 5.40 30.74 0.17 -2.57 16 14 C -0.13 -2.99 5.49 30.68 0.17 -2.82 16 15 C -0.11 -2.13 4.55 30.64 0.14 -1.99 16 16 C 0.10 2.49 4.88 86.07 0.42 2.91 16 17 N -0.58 -16.84 1.69 -828.43 -1.40 -18.25 16 18 C 0.58 15.98 6.14 86.71 0.53 16.51 16 19 O -0.58 -19.53 15.72 -4.03 -0.06 -19.59 16 20 C -0.09 -1.76 5.64 41.21 0.23 -1.53 16 21 C 0.20 2.37 10.77 84.18 0.91 3.28 16 22 N -0.57 -5.30 5.28 -316.87 -1.67 -6.98 16 23 H 0.44 1.57 8.92 -92.71 -0.83 0.75 16 24 C 0.48 7.16 7.74 85.09 0.66 7.82 16 25 O -0.56 -12.12 17.95 -4.88 -0.09 -12.21 16 26 C 0.04 0.51 11.23 85.75 0.96 1.47 16 27 N -0.36 -5.99 4.59 -183.47 -0.84 -6.84 16 28 C 0.11 3.93 5.60 86.62 0.48 4.41 16 29 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.37 20.16 7.80 -92.71 -0.72 19.44 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.64 7.85 -2.39 -0.02 1.62 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.46 5.38 -2.39 -0.01 1.45 16 35 H 0.06 1.65 5.47 -2.39 -0.01 1.63 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.23 5.28 -2.39 -0.01 1.21 16 39 H 0.07 1.83 6.07 -2.39 -0.01 1.82 16 40 H 0.11 2.38 5.90 -2.38 -0.01 2.37 16 41 H 0.21 1.64 7.59 -2.91 -0.02 1.62 16 42 H 0.22 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.06 2.54 6.74 -2.39 -0.02 2.53 16 44 H 0.04 1.80 8.08 -2.39 -0.02 1.78 16 Total: -1.00 -73.43 339.75 2.34 -71.09 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.48 Total: 27.79 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.23 Total: 14.32 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -5.29 Total: -128.98 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.15 Total: -31.80 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -73.43 2.34 -71.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088370527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.458 kcal (2) G-P(sol) polarization free energy of solvation -73.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds