Wall clock time and date at job start Tue Mar 31 2020 12:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00386 * 2 1 4 4 H 1.48501 * 109.47196 * 239.99868 * 3 2 1 5 5 H 1.48507 * 109.46668 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47339 * 119.99324 * 3 2 1 7 7 C 1.38817 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99697 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99802 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49875 * 35.04337 * 10 9 7 12 12 C 1.52876 * 109.48296 * 155.08448 * 10 9 7 13 13 C 1.53957 * 109.73141 * 192.86928 * 12 10 9 14 14 C 1.52446 * 110.72740 * 44.36966 * 13 12 10 15 15 C 1.53801 * 109.40237 * 246.27044 * 14 13 12 16 16 C 1.51804 * 109.05640 * 77.79181 * 15 14 13 17 17 N 1.46966 * 109.39939 * 287.19175 * 16 15 14 18 18 C 1.34778 * 120.36205 * 291.90129 * 17 16 15 19 19 O 1.21599 * 119.99601 * 181.46385 * 18 17 16 20 20 C 1.47574 * 120.00411 * 1.19119 * 18 17 16 21 21 C 1.38049 * 119.72842 * 173.39202 * 20 18 17 22 22 N 1.34875 * 119.94556 * 179.73507 * 21 20 18 23 23 H 0.97003 * 120.30837 * 180.25032 * 22 21 20 24 24 C 1.34957 * 119.38738 * 0.53549 * 22 21 20 25 25 O 1.21860 * 120.27240 * 179.71735 * 24 22 21 26 26 C 1.41783 * 119.45655 * 359.73728 * 24 22 21 27 27 N 1.30608 * 120.03559 * 359.97438 * 26 24 22 28 28 C 1.45329 * 119.26859 * 111.62652 * 17 16 15 29 29 H 0.97001 * 120.00120 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00116 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.43082 * 312.95052 * 12 10 9 32 32 H 1.09001 * 109.42567 * 72.79501 * 12 10 9 33 33 H 1.09002 * 109.22491 * 164.69260 * 13 12 10 34 34 H 1.08996 * 109.22550 * 284.09031 * 13 12 10 35 35 H 1.08994 * 109.48237 * 6.25050 * 14 13 12 36 36 H 1.08997 * 109.48124 * 126.28360 * 14 13 12 37 37 H 1.09000 * 109.52412 * 197.74084 * 15 14 13 38 38 H 1.09002 * 109.52079 * 317.87123 * 15 14 13 39 39 H 1.08998 * 109.16990 * 167.34687 * 16 15 14 40 40 H 1.08991 * 109.59772 * 47.29904 * 16 15 14 41 41 H 1.08001 * 120.02745 * 0.02562 * 21 20 18 42 42 H 1.08003 * 119.98449 * 179.97438 * 26 24 22 43 43 H 1.08998 * 109.67553 * 76.66550 * 28 17 16 44 44 H 1.09007 * 109.67383 * 197.16452 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9684 -3.5513 0.5905 12 6 1.1809 -4.7520 0.6077 13 6 2.0366 -5.9961 0.9084 14 6 3.3525 -5.5994 1.5678 15 6 4.5183 -5.9263 0.6193 16 6 4.5953 -4.8591 -0.4575 17 7 3.4800 -5.0336 -1.3985 18 6 3.4351 -6.1090 -2.2098 19 8 2.5232 -6.2334 -3.0045 20 6 4.4958 -7.1325 -2.1377 21 6 4.3751 -8.2963 -2.8705 22 7 5.3444 -9.2323 -2.8121 23 1 5.2667 -10.0503 -3.3276 24 6 6.4207 -9.0228 -2.0253 25 8 7.3035 -9.8600 -1.9565 26 6 6.5157 -7.8210 -1.2792 27 7 5.5668 -6.9268 -1.3565 28 6 2.4231 -4.0370 -1.4405 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 0.7338 -4.3874 1.5324 32 1 0.3917 -5.0162 -0.0962 33 1 1.4854 -6.6578 1.5765 34 1 2.2467 -6.5209 -0.0235 35 1 3.3451 -4.5302 1.7797 36 1 3.4744 -6.1537 2.4984 37 1 5.4514 -5.9460 1.1823 38 1 4.3505 -6.8995 0.1579 39 1 5.5409 -4.9565 -0.9910 40 1 4.5342 -3.8721 0.0009 41 1 3.5074 -8.4550 -3.4937 42 1 7.3731 -7.6447 -0.6465 43 1 2.7723 -3.1541 -1.9758 44 1 1.5491 -4.4499 -1.9443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088370528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:25 Heat of formation + Delta-G solvation = 20.224579 kcal Electronic energy + Delta-G solvation = -28307.335219 eV Core-core repulsion = 24455.014770 eV Total energy + Delta-G solvation = -3852.320449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20277 -40.23690 -38.00342 -37.47402 -35.83845 -34.59032 -33.76820 -32.22255 -30.77871 -29.89729 -27.22674 -26.36079 -25.64673 -24.77765 -23.66624 -22.55558 -21.47267 -20.87525 -19.06942 -18.73022 -18.34437 -17.22062 -17.14967 -16.38482 -16.36198 -15.87068 -15.55266 -15.13031 -14.75156 -14.40265 -14.21061 -14.04421 -13.89733 -13.46708 -13.16090 -12.99685 -12.74176 -12.40787 -12.34832 -12.24361 -11.77628 -11.45417 -11.28306 -11.15989 -10.83689 -10.73079 -10.55189 -10.40259 -10.25677 -10.17974 -10.06297 -9.72495 -9.60932 -9.49541 -8.94624 -8.72522 -8.13646 -6.99321 -5.79275 -3.08859 0.10450 0.91537 2.11120 2.69934 3.16914 3.42816 3.45890 3.47625 3.48324 3.79591 3.85961 4.29941 4.57238 4.60207 4.85213 5.00269 5.17696 5.20139 5.42377 5.47257 5.50575 5.60850 5.70000 5.74557 5.80640 5.91950 5.93723 5.98541 6.03100 6.14800 6.22537 6.25705 6.35540 6.39901 6.50681 6.60967 6.67993 6.82003 6.82480 7.04748 7.14685 7.29319 7.66140 7.66948 8.29620 8.39058 9.50120 10.06738 10.41327 11.42925 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.003374 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.487147 B = 8296.998041 C = 8372.517263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.719 5.719 10 C 0.158 3.842 11 H 0.068 0.932 12 C -0.123 4.123 13 C -0.112 4.112 14 C -0.133 4.133 15 C -0.117 4.117 16 C 0.113 3.887 17 N -0.574 5.574 18 C 0.579 3.421 19 O -0.552 6.552 20 C -0.071 4.071 21 C 0.170 3.830 22 N -0.588 5.588 23 H 0.424 0.576 24 C 0.478 3.522 25 O -0.527 6.527 26 C 0.025 3.975 27 N -0.350 5.350 28 C 0.088 3.912 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.189 0.811 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.411 -18.687 -2.223 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.359 5.359 10 C 0.047 3.953 11 H 0.085 0.915 12 C -0.161 4.161 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.155 4.155 16 C -0.010 4.010 17 N -0.304 5.304 18 C 0.365 3.635 19 O -0.431 6.431 20 C -0.194 4.194 21 C 0.034 3.966 22 N -0.221 5.221 23 H 0.264 0.736 24 C 0.274 3.726 25 O -0.403 6.403 26 C -0.165 4.165 27 N -0.066 5.066 28 C -0.037 4.037 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.206 0.794 42 H 0.209 0.791 43 H 0.089 0.911 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.491 -18.180 -2.122 21.097 hybrid contribution -0.023 -0.185 -0.758 0.781 sum 10.468 -18.365 -2.880 21.334 Atomic orbital electron populations 1.69649 1.05140 1.25868 1.57141 1.24747 0.95475 0.97705 1.02706 0.86293 0.78563 0.83593 0.77865 1.21230 1.21735 1.21210 1.19171 0.90918 0.84017 1.43336 0.91181 1.42412 1.05892 0.99553 1.88082 1.20920 0.95731 0.86403 0.92214 0.91455 1.22012 0.98128 0.94997 1.01006 1.21627 0.95868 0.97661 0.99831 1.21953 0.94661 1.02637 0.97816 1.22020 0.98181 0.99058 0.96255 1.21747 0.89269 0.99357 0.90597 1.47697 1.24300 1.21816 1.36543 1.17183 0.83886 0.81190 0.81260 1.90798 1.36034 1.77669 1.38649 1.20579 0.98208 0.96865 1.03798 1.23201 0.91960 0.87272 0.94165 1.43673 1.18598 1.20333 1.39494 0.73626 1.18818 0.81810 0.90522 0.81446 1.90999 1.37682 1.46644 1.64947 1.24845 1.00105 0.89460 1.02087 1.68555 0.98679 1.28861 1.10481 1.22705 0.89559 0.89799 1.01653 0.93391 0.78127 0.91735 0.92501 0.93244 0.92611 0.90302 0.92848 0.91279 0.91719 0.89396 0.89733 0.79414 0.79054 0.91150 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.44 9.88 -15.06 -0.15 -6.59 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 N -0.72 -17.22 5.13 -53.26 -0.27 -17.49 16 10 C 0.16 2.95 2.29 -67.77 -0.16 2.79 16 11 H 0.07 1.24 3.29 -51.93 -0.17 1.07 16 12 C -0.12 -2.04 5.22 -26.30 -0.14 -2.18 16 13 C -0.11 -1.54 5.41 -26.52 -0.14 -1.68 16 14 C -0.13 -1.66 5.49 -26.60 -0.15 -1.81 16 15 C -0.12 -1.29 4.34 -26.92 -0.12 -1.41 16 16 C 0.11 1.42 4.85 -4.39 -0.02 1.40 16 17 N -0.57 -8.48 1.70 -175.90 -0.30 -8.78 16 18 C 0.58 8.27 6.23 -12.45 -0.08 8.20 16 19 O -0.55 -9.33 15.75 5.28 0.08 -9.25 16 20 C -0.07 -0.76 5.72 -83.11 -0.48 -1.24 16 21 C 0.17 1.27 10.77 -16.28 -0.18 1.09 16 22 N -0.59 -3.76 5.28 -14.20 -0.08 -3.84 16 23 H 0.42 1.53 8.92 -40.82 -0.36 1.17 16 24 C 0.48 4.35 7.74 -14.82 -0.11 4.23 16 25 O -0.53 -6.45 17.95 5.05 0.09 -6.36 16 26 C 0.02 0.20 11.23 -16.72 -0.19 0.02 16 27 N -0.35 -3.39 4.02 -9.34 -0.04 -3.43 16 28 C 0.09 1.58 5.60 -4.44 -0.02 1.56 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.80 5.37 -51.93 -0.28 0.52 16 35 H 0.08 1.12 5.47 -51.93 -0.28 0.83 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.73 4.77 -51.93 -0.25 0.48 16 39 H 0.09 1.02 6.32 -51.93 -0.33 0.69 16 40 H 0.08 1.16 6.06 -51.93 -0.31 0.85 16 41 H 0.19 1.06 7.60 -52.49 -0.40 0.66 16 42 H 0.19 1.16 8.06 -52.48 -0.42 0.74 16 43 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 44 H 0.08 1.56 6.81 -51.93 -0.35 1.20 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -33.02 339.13 -7.27 -40.29 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.55 Total: 9.68 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -2.02 Total: 4.02 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.04 Total: -60.30 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.17 Total: -15.61 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.02 -7.27 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088370528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.516 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds