Wall clock time and date at job start Tue Mar 31 2020 12:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00386 * 2 1 4 4 H 1.48501 * 109.47196 * 239.99868 * 3 2 1 5 5 H 1.48507 * 109.46668 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47339 * 119.99324 * 3 2 1 7 7 C 1.38817 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99697 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99802 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49875 * 35.04337 * 10 9 7 12 12 C 1.52876 * 109.48296 * 155.08448 * 10 9 7 13 13 C 1.53957 * 109.73141 * 192.86928 * 12 10 9 14 14 C 1.52446 * 110.72740 * 44.36966 * 13 12 10 15 15 C 1.53801 * 109.40237 * 246.27044 * 14 13 12 16 16 C 1.51804 * 109.05640 * 77.79181 * 15 14 13 17 17 N 1.46966 * 109.39939 * 287.19175 * 16 15 14 18 18 C 1.34778 * 120.36205 * 291.90129 * 17 16 15 19 19 O 1.21599 * 119.99601 * 181.46385 * 18 17 16 20 20 C 1.47574 * 120.00411 * 1.19119 * 18 17 16 21 21 C 1.38049 * 119.72842 * 173.39202 * 20 18 17 22 22 N 1.34875 * 119.94556 * 179.73507 * 21 20 18 23 23 H 0.97003 * 120.30837 * 180.25032 * 22 21 20 24 24 C 1.34957 * 119.38738 * 0.53549 * 22 21 20 25 25 O 1.21860 * 120.27240 * 179.71735 * 24 22 21 26 26 C 1.41783 * 119.45655 * 359.73728 * 24 22 21 27 27 N 1.30608 * 120.03559 * 359.97438 * 26 24 22 28 28 C 1.45329 * 119.26859 * 111.62652 * 17 16 15 29 29 H 0.97001 * 120.00120 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00116 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.43082 * 312.95052 * 12 10 9 32 32 H 1.09001 * 109.42567 * 72.79501 * 12 10 9 33 33 H 1.09002 * 109.22491 * 164.69260 * 13 12 10 34 34 H 1.08996 * 109.22550 * 284.09031 * 13 12 10 35 35 H 1.08994 * 109.48237 * 6.25050 * 14 13 12 36 36 H 1.08997 * 109.48124 * 126.28360 * 14 13 12 37 37 H 1.09000 * 109.52412 * 197.74084 * 15 14 13 38 38 H 1.09002 * 109.52079 * 317.87123 * 15 14 13 39 39 H 1.08998 * 109.16990 * 167.34687 * 16 15 14 40 40 H 1.08991 * 109.59772 * 47.29904 * 16 15 14 41 41 H 1.08001 * 120.02745 * 0.02562 * 21 20 18 42 42 H 1.08003 * 119.98449 * 179.97438 * 26 24 22 43 43 H 1.08998 * 109.67553 * 76.66550 * 28 17 16 44 44 H 1.09007 * 109.67383 * 197.16452 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9684 -3.5513 0.5905 12 6 1.1809 -4.7520 0.6077 13 6 2.0366 -5.9961 0.9084 14 6 3.3525 -5.5994 1.5678 15 6 4.5183 -5.9263 0.6193 16 6 4.5953 -4.8591 -0.4575 17 7 3.4800 -5.0336 -1.3985 18 6 3.4351 -6.1090 -2.2098 19 8 2.5232 -6.2334 -3.0045 20 6 4.4958 -7.1325 -2.1377 21 6 4.3751 -8.2963 -2.8705 22 7 5.3444 -9.2323 -2.8121 23 1 5.2667 -10.0503 -3.3276 24 6 6.4207 -9.0228 -2.0253 25 8 7.3035 -9.8600 -1.9565 26 6 6.5157 -7.8210 -1.2792 27 7 5.5668 -6.9268 -1.3565 28 6 2.4231 -4.0370 -1.4405 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 0.7338 -4.3874 1.5324 32 1 0.3917 -5.0162 -0.0962 33 1 1.4854 -6.6578 1.5765 34 1 2.2467 -6.5209 -0.0235 35 1 3.3451 -4.5302 1.7797 36 1 3.4744 -6.1537 2.4984 37 1 5.4514 -5.9460 1.1823 38 1 4.3505 -6.8995 0.1579 39 1 5.5409 -4.9565 -0.9910 40 1 4.5342 -3.8721 0.0009 41 1 3.5074 -8.4550 -3.4937 42 1 7.3731 -7.6447 -0.6465 43 1 2.7723 -3.1541 -1.9758 44 1 1.5491 -4.4499 -1.9443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088370528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:24 Heat of formation + Delta-G solvation = -2.541830 kcal Electronic energy + Delta-G solvation = -28308.322445 eV Core-core repulsion = 24455.014770 eV Total energy + Delta-G solvation = -3853.307675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.95187 -41.34908 -39.07214 -38.49393 -36.80443 -35.95330 -34.97714 -33.88698 -31.67838 -31.45667 -28.61314 -27.53003 -26.41083 -26.00693 -25.05345 -23.76067 -22.75389 -21.86756 -20.28450 -19.49462 -19.30104 -19.14454 -18.00707 -17.58687 -17.13045 -16.90377 -16.79303 -16.36978 -15.84022 -15.61085 -15.45900 -15.28773 -15.03780 -14.76901 -14.58696 -14.08308 -14.02035 -13.69696 -13.49539 -13.05094 -12.96536 -12.93325 -12.80315 -12.60906 -12.33260 -12.24266 -12.00592 -11.81687 -11.67721 -11.46708 -11.31716 -11.18502 -11.09706 -10.74994 -10.30734 -9.62417 -9.29243 -8.93669 -7.90876 -5.20057 -0.52498 0.11926 1.46352 1.50361 1.52891 1.58480 1.77478 2.09854 2.59633 2.62427 3.00378 3.17012 3.42577 3.56360 3.83836 3.86839 3.93830 4.10681 4.20624 4.24676 4.32102 4.40246 4.47858 4.62290 4.70764 4.75828 4.85245 4.93676 4.96537 5.03808 5.11542 5.20775 5.29979 5.32350 5.33795 5.40132 5.45637 5.47392 5.52659 5.61791 5.78502 6.30286 6.38172 6.53437 6.61802 7.16267 7.36655 8.10919 8.34475 9.32427 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.003374 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.487147 B = 8296.998041 C = 8372.517263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.279 1.279 5 H -0.300 1.300 6 H -0.275 1.275 7 C -0.237 4.237 8 H 0.079 0.921 9 N -0.733 5.733 10 C 0.159 3.841 11 H 0.078 0.922 12 C -0.117 4.117 13 C -0.103 4.103 14 C -0.132 4.132 15 C -0.107 4.107 16 C 0.113 3.887 17 N -0.578 5.578 18 C 0.578 3.422 19 O -0.585 6.585 20 C -0.096 4.096 21 C 0.203 3.797 22 N -0.571 5.571 23 H 0.440 0.560 24 C 0.479 3.521 25 O -0.557 6.557 26 C 0.032 3.968 27 N -0.357 5.357 28 C 0.106 3.894 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.210 0.790 42 H 0.215 0.785 43 H 0.042 0.958 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.793 -20.724 -1.908 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.368 4.368 8 H 0.097 0.903 9 N -0.372 5.372 10 C 0.051 3.949 11 H 0.095 0.905 12 C -0.155 4.155 13 C -0.141 4.141 14 C -0.169 4.169 15 C -0.145 4.145 16 C -0.008 4.008 17 N -0.307 5.307 18 C 0.367 3.633 19 O -0.467 6.467 20 C -0.219 4.219 21 C 0.066 3.934 22 N -0.204 5.204 23 H 0.283 0.717 24 C 0.276 3.724 25 O -0.435 6.435 26 C -0.157 4.157 27 N -0.073 5.073 28 C -0.020 4.020 29 H 0.058 0.942 30 H 0.203 0.797 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.227 0.773 42 H 0.232 0.768 43 H 0.060 0.940 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.931 -20.279 -1.810 24.119 hybrid contribution -0.724 0.293 -0.915 1.203 sum 12.206 -19.986 -2.725 23.577 Atomic orbital electron populations 1.69814 1.06680 1.26010 1.59570 1.25533 0.96261 1.01015 1.03847 0.85269 0.77207 0.79398 0.78243 1.20573 1.22623 1.20065 1.19572 0.91463 0.84927 1.40863 0.90269 1.42619 1.05458 1.00894 1.88212 1.21094 0.95973 0.85043 0.92823 0.90502 1.21918 0.98015 0.95665 0.99918 1.21576 0.96324 0.96045 1.00181 1.21936 0.94378 1.01633 0.98961 1.21967 0.98673 0.98426 0.95431 1.21894 0.88926 0.99234 0.90784 1.47651 1.24002 1.21509 1.37578 1.17613 0.84239 0.81285 0.80150 1.90777 1.37652 1.78427 1.39814 1.20017 0.98216 0.97176 1.06457 1.23313 0.91944 0.85925 0.92246 1.43563 1.17529 1.20603 1.38663 0.71678 1.18961 0.81711 0.90339 0.81393 1.91001 1.38883 1.47657 1.65989 1.25147 1.00149 0.88618 1.01799 1.68437 0.98741 1.29351 1.10811 1.22106 0.90005 0.89706 1.00185 0.94150 0.79723 0.92745 0.93561 0.91763 0.92918 0.92183 0.90867 0.88767 0.91256 0.87944 0.91265 0.77306 0.76837 0.93964 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.24 -12.73 9.88 84.03 0.83 -11.90 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.73 -36.28 5.13 -322.42 -1.65 -37.94 16 10 C 0.16 6.09 2.29 45.10 0.10 6.20 16 11 H 0.08 2.84 3.29 -2.39 -0.01 2.83 16 12 C -0.12 -3.93 5.22 30.88 0.16 -3.77 16 13 C -0.10 -2.70 5.41 30.73 0.17 -2.53 16 14 C -0.13 -2.99 5.49 30.68 0.17 -2.83 16 15 C -0.11 -2.06 4.34 30.47 0.13 -1.93 16 16 C 0.11 2.67 4.85 85.90 0.42 3.09 16 17 N -0.58 -16.85 1.70 -828.68 -1.40 -18.26 16 18 C 0.58 15.99 6.23 86.71 0.54 16.53 16 19 O -0.58 -19.64 15.75 -4.03 -0.06 -19.70 16 20 C -0.10 -1.81 5.72 41.21 0.24 -1.58 16 21 C 0.20 2.40 10.77 84.18 0.91 3.30 16 22 N -0.57 -5.35 5.28 -316.87 -1.67 -7.03 16 23 H 0.44 1.62 8.92 -92.71 -0.83 0.79 16 24 C 0.48 7.20 7.74 85.09 0.66 7.85 16 25 O -0.56 -12.18 17.95 -4.86 -0.09 -12.27 16 26 C 0.03 0.43 11.23 85.75 0.96 1.39 16 27 N -0.36 -5.85 4.02 -183.47 -0.74 -6.59 16 28 C 0.11 3.95 5.60 86.75 0.49 4.44 16 29 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.37 20.13 7.80 -92.71 -0.72 19.41 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.63 7.87 -2.39 -0.02 1.61 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.42 5.37 -2.39 -0.01 1.41 16 35 H 0.06 1.62 5.47 -2.39 -0.01 1.60 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.34 4.77 -2.39 -0.01 1.33 16 39 H 0.10 2.15 6.32 -2.39 -0.02 2.14 16 40 H 0.07 1.85 6.06 -2.39 -0.01 1.83 16 41 H 0.21 1.66 7.60 -2.91 -0.02 1.63 16 42 H 0.22 1.77 8.06 -2.91 -0.02 1.74 16 43 H 0.04 1.79 8.09 -2.39 -0.02 1.77 16 44 H 0.06 2.51 6.81 -2.38 -0.02 2.49 16 Total: -1.00 -73.39 339.13 2.45 -70.94 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.48 Total: 27.65 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 6.23 Total: 14.53 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -5.19 Total: -128.69 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.15 Total: -31.97 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -73.39 2.45 -70.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088370528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.395 kcal (2) G-P(sol) polarization free energy of solvation -73.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds