Wall clock time and date at job start Tue Mar 31 2020 12:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00315 * 2 1 4 4 H 1.48499 * 109.46882 * 269.99617 * 3 2 1 5 5 H 1.48505 * 109.47088 * 29.99377 * 3 2 1 6 6 H 1.48491 * 109.47706 * 149.99585 * 3 2 1 7 7 C 1.38820 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99892 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00031 * 179.97438 * 9 7 2 11 11 C 1.53780 * 113.61530 * 154.99861 * 10 9 7 12 12 C 1.53784 * 87.08140 * 89.11963 * 11 10 9 13 13 C 1.52999 * 113.61591 * 139.97999 * 12 11 10 14 14 N 1.46497 * 109.47096 * 176.53144 * 13 12 11 15 15 C 1.34774 * 120.00226 * 180.02562 * 14 13 12 16 16 O 1.21683 * 119.99842 * 5.15396 * 15 14 13 17 17 C 1.46763 * 120.00287 * 185.15604 * 15 14 13 18 18 C 1.36939 * 126.93981 * 185.89854 * 17 15 14 19 19 N 1.33564 * 107.86569 * 179.97438 * 18 17 15 20 20 C 1.30249 * 109.65416 * 359.97438 * 19 18 17 21 21 N 1.35184 * 108.96671 * 0.06927 * 20 19 18 22 22 C 1.46507 * 123.69498 * 179.88368 * 21 20 19 23 23 C 1.53471 * 108.12383 * 343.76894 * 22 21 20 24 24 O 1.43036 * 109.59230 * 48.16313 * 23 22 21 25 25 C 1.43422 * 114.06278 * 290.00856 * 24 23 22 26 26 C 1.53785 * 87.16912 * 25.38950 * 12 11 10 27 27 H 0.96997 * 120.00040 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00362 * 359.97438 * 9 7 2 29 29 H 1.09002 * 112.84653 * 23.80981 * 10 9 7 30 30 H 1.09001 * 113.61598 * 334.57287 * 11 10 9 31 31 H 1.09000 * 113.61652 * 203.66737 * 11 10 9 32 32 H 1.09002 * 113.61348 * 270.80302 * 12 11 10 33 33 H 1.09002 * 109.46804 * 56.52851 * 13 12 11 34 34 H 1.09000 * 109.47300 * 296.52921 * 13 12 11 35 35 H 0.97004 * 119.99814 * 359.97438 * 14 13 12 36 36 H 1.08003 * 126.07143 * 359.95566 * 18 17 15 37 37 H 1.08997 * 109.73024 * 224.10715 * 22 21 20 38 38 H 1.09001 * 109.77159 * 103.44534 * 22 21 20 39 39 H 1.09002 * 109.44399 * 168.19638 * 23 22 21 40 40 H 1.08998 * 109.44616 * 288.13204 * 23 22 21 41 41 H 1.09000 * 109.78155 * 290.07236 * 25 24 23 42 42 H 1.09001 * 109.85713 * 169.26229 * 25 24 23 43 43 H 1.09001 * 113.61293 * 89.16163 * 26 12 11 44 44 H 1.08999 * 113.61238 * 220.06116 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.2601 -4.8288 0.5960 12 6 0.7204 -5.0792 -0.8221 13 6 0.6196 -6.5617 -1.1866 14 7 0.0211 -6.6978 -2.5168 15 6 -0.1677 -7.9216 -3.0488 16 8 0.0711 -8.9155 -2.3886 17 6 -0.6613 -8.0557 -4.4244 18 6 -1.0087 -9.2152 -5.0648 19 7 -1.4056 -8.8981 -6.3000 20 6 -1.3270 -7.6088 -6.4679 21 7 -0.8679 -7.0445 -5.3285 22 6 -0.6540 -5.6046 -5.1635 23 6 -0.6367 -4.9618 -6.5570 24 8 -1.7586 -5.4258 -7.3133 25 6 -1.6737 -6.8045 -7.6993 26 6 1.9978 -4.4016 -1.3455 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 3.0655 -3.5639 0.4061 30 1 0.4937 -4.5189 1.3065 31 1 1.8869 -5.6367 0.9736 32 1 -0.1911 -4.5251 -1.0465 33 1 -0.0033 -7.0745 -0.4536 34 1 1.6159 -7.0037 -1.1895 35 1 -0.2400 -5.9071 -3.0144 36 1 -0.9685 -10.2098 -4.6456 37 1 0.2993 -5.4289 -4.6652 38 1 -1.4631 -5.1771 -4.5712 39 1 -0.6896 -3.8776 -6.4572 40 1 0.2852 -5.2343 -7.0709 41 1 -0.8960 -6.9295 -8.4527 42 1 -2.6317 -7.1366 -8.0994 43 1 2.8267 -5.0924 -1.4997 44 1 1.8262 -3.7473 -2.2002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091080691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:22 Heat of formation + Delta-G solvation = 21.614462 kcal Electronic energy + Delta-G solvation = -26812.650868 eV Core-core repulsion = 22960.390688 eV Total energy + Delta-G solvation = -3852.260180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.89302 -39.74450 -38.82512 -38.42529 -35.28593 -34.31662 -33.24941 -31.16508 -30.49693 -30.13224 -27.81651 -26.33596 -25.19703 -24.51366 -23.92502 -22.82233 -21.62844 -20.93419 -20.10452 -18.65762 -18.17104 -17.48964 -17.28284 -16.60253 -16.19210 -15.93854 -15.71972 -15.55567 -15.16739 -14.88369 -14.54584 -14.30802 -14.15273 -13.87263 -13.52648 -13.36347 -13.17774 -12.98634 -12.38124 -12.36598 -12.04779 -11.81180 -11.53353 -11.14564 -10.92931 -10.87463 -10.61759 -10.56288 -10.35643 -10.24137 -10.09441 -9.98110 -9.79184 -9.60622 -9.26177 -8.98688 -8.76122 -7.10511 -5.90034 -3.19555 0.96588 2.00142 2.44476 2.92722 3.06290 3.14638 3.34736 3.40934 3.42349 3.59650 3.84286 4.21044 4.33365 4.42466 4.47339 4.72909 4.80674 4.91118 4.92245 4.97782 5.00502 5.05476 5.09801 5.24856 5.35382 5.47023 5.57253 5.60768 5.74918 5.82443 5.97478 6.09112 6.11142 6.20488 6.25111 6.31596 6.46055 6.54642 6.59446 6.76523 6.91175 7.20892 7.55445 7.60234 7.93177 8.28909 9.39848 9.96383 10.30633 11.32229 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.003017 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.484824 B = 9278.162378 C =10931.908327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.122 4.122 13 C 0.129 3.871 14 N -0.726 5.726 15 C 0.593 3.407 16 O -0.527 6.527 17 C -0.076 4.076 18 C 0.062 3.938 19 N -0.480 5.480 20 C 0.190 3.810 21 N -0.438 5.438 22 C 0.052 3.948 23 C 0.049 3.951 24 O -0.367 6.367 25 C 0.147 3.853 26 C -0.170 4.170 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.396 0.604 36 H 0.187 0.813 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.068 0.932 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 -13.468 -13.438 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.056 3.944 11 C -0.186 4.186 12 C -0.141 4.141 13 C 0.007 3.993 14 N -0.379 5.379 15 C 0.379 3.621 16 O -0.403 6.403 17 C -0.191 4.191 18 C -0.091 4.091 19 N -0.200 5.200 20 C -0.073 4.073 21 N -0.123 5.123 22 C -0.070 4.070 23 C -0.028 4.028 24 O -0.284 6.284 25 C 0.068 3.932 26 C -0.211 4.211 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.204 0.796 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.148 0.852 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.149 0.851 43 H 0.087 0.913 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.779 -14.213 -13.480 19.669 hybrid contribution 0.451 1.665 0.551 1.811 sum -1.328 -12.547 -12.928 18.065 Atomic orbital electron populations 1.69654 1.05150 1.25884 1.57306 1.24765 0.95539 0.97811 1.02635 0.86172 0.78720 0.83632 0.77553 1.21657 1.21701 1.20659 1.19286 0.91131 0.83932 1.43204 0.90974 1.42176 1.05668 0.99440 1.87129 1.21078 0.95206 0.85586 0.92546 1.23441 1.00535 0.99747 0.94924 1.22738 0.99557 0.92728 0.99045 1.21575 0.98146 0.97346 0.82263 1.46271 1.63646 1.07588 1.20433 1.16822 0.77668 0.83882 0.83769 1.90848 1.51645 1.37137 1.60670 1.21117 1.15663 0.89278 0.93059 1.22745 0.99194 0.97888 0.89307 1.69860 1.21071 1.10605 1.18421 1.24191 1.01958 0.90317 0.90806 1.45305 1.47744 1.07469 1.11751 1.23054 1.05053 0.77110 1.01777 1.23041 0.90200 1.01152 0.88392 1.88204 1.42967 1.24763 1.72481 1.21358 1.04682 0.78183 0.88939 1.23941 0.95645 0.99648 1.01870 0.93376 0.78130 0.91833 0.91179 0.90311 0.88982 0.91297 0.91186 0.76759 0.79559 0.87256 0.87633 0.85247 0.91057 0.89289 0.85141 0.91322 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.24 -6.44 9.97 -15.06 -0.15 -6.59 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -16.49 5.31 -52.55 -0.28 -16.77 16 10 C 0.17 3.07 4.57 -67.03 -0.31 2.77 16 11 C -0.15 -2.20 7.39 -25.92 -0.19 -2.39 16 12 C -0.12 -1.68 3.62 -89.80 -0.33 -2.00 16 13 C 0.13 1.64 5.50 -4.04 -0.02 1.62 16 14 N -0.73 -8.77 5.43 -61.59 -0.33 -9.10 16 15 C 0.59 8.17 7.78 -12.82 -0.10 8.07 16 16 O -0.53 -8.78 16.92 5.20 0.09 -8.69 16 17 C -0.08 -0.95 6.95 -82.49 -0.57 -1.52 16 18 C 0.06 0.78 11.68 -17.27 -0.20 0.58 16 19 N -0.48 -5.96 11.19 -10.29 -0.12 -6.08 16 20 C 0.19 2.01 7.78 -155.30 -1.21 0.80 16 21 N -0.44 -4.62 3.16 -109.66 -0.35 -4.96 16 22 C 0.05 0.41 5.51 -3.79 -0.02 0.39 16 23 C 0.05 0.31 6.83 37.40 0.26 0.57 16 24 O -0.37 -2.95 10.78 -35.23 -0.38 -3.33 16 25 C 0.15 1.06 7.29 36.21 0.26 1.32 16 26 C -0.17 -2.57 7.44 -25.83 -0.19 -2.76 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.38 9.53 7.90 -40.82 -0.32 9.21 16 29 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 35 H 0.40 4.14 4.88 -40.82 -0.20 3.94 16 36 H 0.19 2.06 8.06 -52.48 -0.42 1.63 16 37 H 0.11 0.78 6.96 -51.93 -0.36 0.42 16 38 H 0.11 0.78 7.95 -51.93 -0.41 0.37 16 39 H 0.13 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -32.85 363.52 -9.36 -42.21 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.31 Total: 10.49 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -2.87 Total: 0.44 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.35 Total: -63.01 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.29 Total: -12.02 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.85 -9.36 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091080691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.823 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds