Wall clock time and date at job start Tue Mar 31 2020 12:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00315 * 2 1 4 4 H 1.48499 * 109.46882 * 269.99617 * 3 2 1 5 5 H 1.48505 * 109.47088 * 29.99377 * 3 2 1 6 6 H 1.48491 * 109.47706 * 149.99585 * 3 2 1 7 7 C 1.38820 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99892 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00031 * 179.97438 * 9 7 2 11 11 C 1.53780 * 113.61530 * 154.99861 * 10 9 7 12 12 C 1.53784 * 87.08140 * 89.11963 * 11 10 9 13 13 C 1.52999 * 113.61591 * 139.97999 * 12 11 10 14 14 N 1.46497 * 109.47096 * 176.53144 * 13 12 11 15 15 C 1.34774 * 120.00226 * 180.02562 * 14 13 12 16 16 O 1.21683 * 119.99842 * 5.15396 * 15 14 13 17 17 C 1.46763 * 120.00287 * 185.15604 * 15 14 13 18 18 C 1.36939 * 126.93981 * 185.89854 * 17 15 14 19 19 N 1.33564 * 107.86569 * 179.97438 * 18 17 15 20 20 C 1.30249 * 109.65416 * 359.97438 * 19 18 17 21 21 N 1.35184 * 108.96671 * 0.06927 * 20 19 18 22 22 C 1.46507 * 123.69498 * 179.88368 * 21 20 19 23 23 C 1.53471 * 108.12383 * 343.76894 * 22 21 20 24 24 O 1.43036 * 109.59230 * 48.16313 * 23 22 21 25 25 C 1.43422 * 114.06278 * 290.00856 * 24 23 22 26 26 C 1.53785 * 87.16912 * 25.38950 * 12 11 10 27 27 H 0.96997 * 120.00040 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00362 * 359.97438 * 9 7 2 29 29 H 1.09002 * 112.84653 * 23.80981 * 10 9 7 30 30 H 1.09001 * 113.61598 * 334.57287 * 11 10 9 31 31 H 1.09000 * 113.61652 * 203.66737 * 11 10 9 32 32 H 1.09002 * 113.61348 * 270.80302 * 12 11 10 33 33 H 1.09002 * 109.46804 * 56.52851 * 13 12 11 34 34 H 1.09000 * 109.47300 * 296.52921 * 13 12 11 35 35 H 0.97004 * 119.99814 * 359.97438 * 14 13 12 36 36 H 1.08003 * 126.07143 * 359.95566 * 18 17 15 37 37 H 1.08997 * 109.73024 * 224.10715 * 22 21 20 38 38 H 1.09001 * 109.77159 * 103.44534 * 22 21 20 39 39 H 1.09002 * 109.44399 * 168.19638 * 23 22 21 40 40 H 1.08998 * 109.44616 * 288.13204 * 23 22 21 41 41 H 1.09000 * 109.78155 * 290.07236 * 25 24 23 42 42 H 1.09001 * 109.85713 * 169.26229 * 25 24 23 43 43 H 1.09001 * 113.61293 * 89.16163 * 26 12 11 44 44 H 1.08999 * 113.61238 * 220.06116 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.2601 -4.8288 0.5960 12 6 0.7204 -5.0792 -0.8221 13 6 0.6196 -6.5617 -1.1866 14 7 0.0211 -6.6978 -2.5168 15 6 -0.1677 -7.9216 -3.0488 16 8 0.0711 -8.9155 -2.3886 17 6 -0.6613 -8.0557 -4.4244 18 6 -1.0087 -9.2152 -5.0648 19 7 -1.4056 -8.8981 -6.3000 20 6 -1.3270 -7.6088 -6.4679 21 7 -0.8679 -7.0445 -5.3285 22 6 -0.6540 -5.6046 -5.1635 23 6 -0.6367 -4.9618 -6.5570 24 8 -1.7586 -5.4258 -7.3133 25 6 -1.6737 -6.8045 -7.6993 26 6 1.9978 -4.4016 -1.3455 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 3.0655 -3.5639 0.4061 30 1 0.4937 -4.5189 1.3065 31 1 1.8869 -5.6367 0.9736 32 1 -0.1911 -4.5251 -1.0465 33 1 -0.0033 -7.0745 -0.4536 34 1 1.6159 -7.0037 -1.1895 35 1 -0.2400 -5.9071 -3.0144 36 1 -0.9685 -10.2098 -4.6456 37 1 0.2993 -5.4289 -4.6652 38 1 -1.4631 -5.1771 -4.5712 39 1 -0.6896 -3.8776 -6.4572 40 1 0.2852 -5.2343 -7.0709 41 1 -0.8960 -6.9295 -8.4527 42 1 -2.6317 -7.1366 -8.0994 43 1 2.8267 -5.0924 -1.4997 44 1 1.8262 -3.7473 -2.2002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091080691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:21 Heat of formation + Delta-G solvation = -1.356432 kcal Electronic energy + Delta-G solvation = -26813.646960 eV Core-core repulsion = 22960.390688 eV Total energy + Delta-G solvation = -3853.256272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.72094 -40.85779 -39.85514 -39.29861 -36.34971 -35.48701 -34.76246 -32.23648 -31.79434 -31.05651 -28.99394 -27.15811 -26.46342 -25.73537 -25.15649 -23.97342 -22.78442 -21.86997 -20.91211 -19.88599 -19.35895 -19.00278 -18.10133 -17.45671 -17.26190 -16.76180 -16.60640 -16.48324 -16.33483 -16.03213 -15.67360 -15.63147 -15.27689 -14.92629 -14.69030 -14.61190 -14.38697 -13.87093 -13.74230 -13.31275 -12.99329 -12.93615 -12.92182 -12.65245 -12.34815 -12.16990 -12.09727 -11.83429 -11.56524 -11.49849 -11.26753 -11.18761 -10.95400 -10.86756 -10.80506 -10.33429 -9.64600 -9.00137 -7.95417 -5.23505 0.04735 1.24364 1.48865 1.49757 1.55369 1.58037 1.92741 2.10747 2.55875 2.57613 2.93003 3.20073 3.36853 3.39149 3.67445 3.72277 3.79211 3.79621 3.86074 4.03841 4.12657 4.24470 4.27561 4.29461 4.35204 4.44571 4.53180 4.64086 4.68725 4.71506 4.79095 4.91814 4.96834 5.06294 5.14939 5.29552 5.31859 5.42014 5.52131 5.63811 5.66278 5.82523 6.21841 6.28190 6.68475 6.89699 7.33762 8.10387 8.32683 9.27618 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.003017 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.484824 B = 9278.162378 C =10931.908327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.144 3.856 11 C -0.135 4.135 12 C -0.105 4.105 13 C 0.137 3.863 14 N -0.718 5.718 15 C 0.595 3.405 16 O -0.561 6.561 17 C -0.094 4.094 18 C 0.053 3.947 19 N -0.503 5.503 20 C 0.194 3.806 21 N -0.437 5.437 22 C 0.045 3.955 23 C 0.049 3.951 24 O -0.379 6.379 25 C 0.147 3.853 26 C -0.152 4.152 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.404 0.596 36 H 0.192 0.808 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.147 0.853 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.145 0.855 43 H 0.092 0.908 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 -13.536 -14.578 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.196 1.196 7 C -0.373 4.373 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.034 3.966 11 C -0.174 4.174 12 C -0.123 4.123 13 C 0.014 3.986 14 N -0.371 5.371 15 C 0.382 3.618 16 O -0.440 6.440 17 C -0.209 4.209 18 C -0.101 4.101 19 N -0.223 5.223 20 C -0.069 4.069 21 N -0.121 5.121 22 C -0.077 4.077 23 C -0.027 4.027 24 O -0.296 6.296 25 C 0.069 3.931 26 C -0.193 4.193 27 H 0.060 0.940 28 H 0.207 0.793 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.242 0.758 36 H 0.209 0.791 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.165 0.835 40 H 0.103 0.897 41 H 0.131 0.869 42 H 0.163 0.837 43 H 0.111 0.889 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.799 -14.287 -14.628 20.463 hybrid contribution 0.191 1.630 0.891 1.868 sum -0.608 -12.657 -13.737 18.688 Atomic orbital electron populations 1.69796 1.06498 1.26041 1.59473 1.25496 0.96313 1.00876 1.03751 0.85199 0.77702 0.79759 0.77455 1.21281 1.22531 1.19628 1.19649 0.91500 0.85145 1.41055 0.90588 1.42300 1.05318 1.00522 1.87615 1.21404 0.95061 0.84850 0.95250 1.23358 1.00018 0.98816 0.95248 1.22519 0.98562 0.93266 0.97995 1.21454 0.98511 0.96138 0.82467 1.46183 1.63081 1.07566 1.20221 1.16926 0.77126 0.83687 0.84035 1.90823 1.53344 1.38187 1.61626 1.20949 1.16946 0.90058 0.92987 1.22969 0.99114 0.98399 0.89649 1.69864 1.22148 1.11824 1.18425 1.24914 1.00278 0.90169 0.91588 1.45446 1.47232 1.08161 1.11270 1.23316 1.05490 0.75672 1.03201 1.23205 0.90330 1.01925 0.87286 1.88196 1.43838 1.24919 1.72608 1.21666 1.06281 0.77405 0.87781 1.23752 0.97023 0.99196 0.99325 0.94037 0.79338 0.92178 0.92398 0.87547 0.90042 0.91449 0.90575 0.75761 0.79106 0.86564 0.87398 0.83532 0.89743 0.86903 0.83734 0.88929 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.42 13.06 21.65 0.28 -56.14 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.97 44.06 29.55 68.60 2.03 46.09 16 4 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.24 -12.67 9.97 84.04 0.84 -11.83 16 8 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 9 N -0.72 -33.56 5.31 -320.17 -1.70 -35.26 16 10 C 0.14 5.10 4.57 45.57 0.21 5.31 16 11 C -0.14 -3.82 7.39 31.12 0.23 -3.59 16 12 C -0.10 -2.70 3.62 -10.27 -0.04 -2.74 16 13 C 0.14 3.21 5.50 86.38 0.48 3.68 16 14 N -0.72 -16.34 5.43 -467.01 -2.54 -18.87 16 15 C 0.60 16.00 7.78 86.47 0.67 16.67 16 16 O -0.56 -18.52 16.92 -4.29 -0.07 -18.59 16 17 C -0.09 -2.30 6.95 40.23 0.28 -2.02 16 18 C 0.05 1.32 11.68 84.12 0.98 2.30 16 19 N -0.50 -12.12 11.19 -186.48 -2.09 -14.21 16 20 C 0.19 3.83 7.78 138.29 1.08 4.91 16 21 N -0.44 -8.67 3.16 -500.86 -1.58 -10.25 16 22 C 0.04 0.62 5.51 86.54 0.48 1.10 16 23 C 0.05 0.51 6.83 72.14 0.49 1.00 16 24 O -0.38 -5.20 10.78 -148.98 -1.61 -6.81 16 25 C 0.15 1.78 7.29 71.37 0.52 2.30 16 26 C -0.15 -4.29 7.44 31.18 0.23 -4.06 16 27 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.37 18.77 7.90 -92.71 -0.73 18.04 16 29 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.11 2.45 8.10 -2.39 -0.02 2.43 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.75 7.87 -2.39 -0.02 1.73 16 35 H 0.40 7.86 4.88 -92.71 -0.45 7.40 16 36 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.12 1.44 6.96 -2.39 -0.02 1.42 16 38 H 0.11 1.45 7.95 -2.39 -0.02 1.43 16 39 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 0.66 8.10 -2.39 -0.02 0.65 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 2.21 7.92 -2.39 -0.02 2.19 16 44 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -70.56 363.52 -0.51 -71.07 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.15 Total: 33.41 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 6.91 Total: 9.57 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -7.62 Total: -134.74 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.68 Total: -25.40 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -70.56 -0.51 -71.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091080691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.714 kcal (2) G-P(sol) polarization free energy of solvation -70.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds