Wall clock time and date at job start Tue Mar 31 2020 12:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00153 * 2 1 4 4 H 1.48506 * 109.47254 * 269.99926 * 3 2 1 5 5 H 1.48504 * 109.47485 * 29.99898 * 3 2 1 6 6 H 1.48503 * 109.47262 * 150.00121 * 3 2 1 7 7 C 1.38807 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99996 * 359.72205 * 7 2 1 9 9 N 1.36935 * 120.00197 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00144 * 173.52152 * 9 7 2 11 11 C 1.53002 * 109.47079 * 63.15979 * 10 9 7 12 12 N 1.46501 * 109.47074 * 54.66410 * 11 10 9 13 13 C 1.34772 * 120.00156 * 176.26094 * 12 11 10 14 14 O 1.21551 * 119.99488 * 359.97438 * 13 12 11 15 15 C 1.47931 * 120.00154 * 179.97438 * 13 12 11 16 16 C 1.39979 * 120.11319 * 179.72289 * 15 13 12 17 17 C 1.38418 * 117.96390 * 179.78074 * 16 15 13 18 18 C 1.39349 * 118.03916 * 0.48476 * 17 16 15 19 19 O 1.35521 * 120.02571 * 179.76877 * 18 17 16 20 20 N 1.32675 * 119.94213 * 359.74734 * 18 17 16 21 21 N 1.28355 * 122.19670 * 0.02562 * 20 18 17 22 22 C 1.52994 * 109.47395 * 303.15687 * 10 9 7 23 23 C 1.53002 * 109.47245 * 300.00190 * 22 10 9 24 24 C 1.53001 * 109.47287 * 299.99819 * 23 22 10 25 25 C 1.52994 * 109.46830 * 59.99927 * 24 23 22 26 26 C 1.53001 * 109.46895 * 183.16016 * 10 9 7 27 27 H 0.97007 * 119.99739 * 0.02562 * 1 2 3 28 28 H 0.96997 * 119.99699 * 353.53102 * 9 7 2 29 29 H 1.09002 * 109.46887 * 174.65993 * 11 10 9 30 30 H 1.08999 * 109.46625 * 294.66121 * 11 10 9 31 31 H 0.96999 * 119.99896 * 356.25629 * 12 11 10 32 32 H 1.07994 * 121.02203 * 0.02562 * 16 15 13 33 33 H 1.08002 * 120.97776 * 180.22851 * 17 16 15 34 34 H 0.96701 * 114.00202 * 269.97448 * 19 18 17 35 35 H 1.09007 * 109.46966 * 60.00111 * 22 10 9 36 36 H 1.08996 * 109.47701 * 179.97438 * 22 10 9 37 37 H 1.08999 * 109.47048 * 179.97438 * 23 22 10 38 38 H 1.08998 * 109.47285 * 60.00016 * 23 22 10 39 39 H 1.09003 * 109.46436 * 300.00259 * 24 23 22 40 40 H 1.08993 * 109.47035 * 179.97438 * 24 23 22 41 41 H 1.09007 * 109.46966 * 180.02562 * 25 24 23 42 42 H 1.08996 * 109.47701 * 60.00337 * 25 24 23 43 43 H 1.08998 * 109.47119 * 180.02562 * 26 10 9 44 44 H 1.08999 * 109.47147 * 300.00065 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1375 0.0036 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4629 0.1415 11 6 3.8024 -3.3703 -1.0509 12 7 4.0933 -2.6561 -2.2965 13 6 3.9668 -3.2872 -3.4805 14 8 3.6118 -4.4492 -3.5149 15 6 4.2600 -2.5659 -4.7383 16 6 4.1350 -3.2209 -5.9691 17 6 4.4160 -2.5022 -7.1183 18 6 4.8159 -1.1746 -6.9793 19 8 5.1055 -0.4351 -8.0774 20 7 4.9123 -0.6351 -5.7711 21 7 4.6483 -1.2969 -4.7035 22 6 3.6843 -3.1578 1.4357 23 6 3.9938 -2.2504 2.6281 24 6 5.4962 -1.9648 2.6752 25 6 5.9239 -1.2699 1.3810 26 6 5.6144 -2.1773 0.1886 27 1 -0.4850 0.8401 -0.0004 28 1 3.8645 -0.3676 -0.0957 29 1 4.4187 -4.2676 -0.9942 30 1 2.7493 -3.6507 -1.0302 31 1 4.3769 -1.7289 -2.2690 32 1 3.8249 -4.2540 -6.0208 33 1 4.3319 -2.9584 -8.0936 34 1 6.0329 -0.4792 -8.3479 35 1 2.6139 -3.3613 1.4022 36 1 4.2289 -4.0960 1.5416 37 1 3.6887 -2.7453 3.5501 38 1 3.4488 -1.3124 2.5221 39 1 6.0412 -2.9028 2.7812 40 1 5.7166 -1.3180 3.5243 41 1 6.9944 -1.0668 1.4143 42 1 5.3790 -0.3319 1.2749 43 1 6.1594 -3.1153 0.2942 44 1 5.9192 -1.6822 -0.7334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115394540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:01 Heat of formation + Delta-G solvation = -9.740014 kcal Electronic energy + Delta-G solvation = -27707.908634 eV Core-core repulsion = 23854.288822 eV Total energy + Delta-G solvation = -3853.619812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43118 -39.61282 -38.58197 -37.74589 -34.66654 -33.49401 -33.28374 -31.97086 -31.10338 -30.32414 -29.15171 -26.19680 -25.02890 -24.25391 -23.45404 -22.23275 -21.05641 -20.31638 -19.45269 -18.58382 -18.05819 -17.76222 -17.63968 -16.41319 -15.53692 -15.27229 -15.08547 -14.81047 -14.41227 -14.31629 -14.21642 -13.84485 -13.57552 -13.45806 -13.19603 -12.59731 -12.58079 -12.22577 -12.21171 -12.01656 -11.93913 -11.65050 -11.26208 -10.93712 -10.81972 -10.60568 -10.59078 -10.24486 -10.08854 -10.01083 -9.94616 -9.78412 -9.74714 -9.63050 -9.35901 -8.87657 -8.60056 -7.29198 -5.75794 -3.13005 0.18521 0.48089 2.56241 3.03347 3.25259 3.39281 3.42190 3.49012 3.56573 3.90157 4.34438 4.45960 4.60425 4.66934 4.79971 5.03292 5.15719 5.17307 5.33762 5.36445 5.52651 5.55785 5.62749 5.71387 5.72822 5.87946 5.94283 6.03185 6.06821 6.10001 6.18946 6.35102 6.42977 6.49062 6.62905 6.68544 6.72335 6.86033 6.93500 6.97903 7.10676 7.79072 7.99391 8.30086 8.40097 8.43523 9.19826 9.92054 10.10793 11.42040 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.004352 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.696387 B = 6431.854306 C = 7338.632347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.010 3.990 3 Si 0.874 3.126 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.735 5.735 10 C 0.197 3.803 11 C 0.112 3.888 12 N -0.674 5.674 13 C 0.569 3.431 14 O -0.541 6.541 15 C 0.024 3.976 16 C -0.050 4.050 17 C -0.142 4.142 18 C 0.267 3.733 19 O -0.472 6.472 20 N -0.254 5.254 21 N -0.178 5.178 22 C -0.113 4.113 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.119 4.119 27 H 0.258 0.742 28 H 0.362 0.638 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.412 0.588 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.407 0.593 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.991 -6.475 -9.028 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.186 4.186 3 Si 0.705 3.295 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.367 4.367 8 H 0.109 0.891 9 N -0.379 5.379 10 C 0.105 3.895 11 C -0.014 4.014 12 N -0.323 5.323 13 C 0.351 3.649 14 O -0.419 6.419 15 C -0.123 4.123 16 C -0.079 4.079 17 C -0.172 4.172 18 C 0.082 3.918 19 O -0.278 6.278 20 N -0.107 5.107 21 N -0.027 5.027 22 C -0.153 4.153 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.157 4.157 27 H 0.068 0.932 28 H 0.196 0.804 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.250 0.750 32 H 0.185 0.815 33 H 0.179 0.821 34 H 0.266 0.734 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.262 -5.862 -8.155 17.443 hybrid contribution 0.631 0.539 -1.133 1.404 sum 14.893 -5.324 -9.288 18.341 Atomic orbital electron populations 1.69696 1.05146 1.25704 1.57309 1.24636 0.95067 0.96962 1.01888 0.86717 0.79402 0.85484 0.77939 1.20996 1.22028 1.20043 1.18901 0.80351 0.94462 1.42969 0.89127 1.42823 1.04032 1.02474 1.88548 1.19777 0.90287 0.87500 0.91899 1.22026 1.01634 0.94499 0.83196 1.45672 1.64963 1.16649 1.04993 1.17374 0.79020 0.85896 0.82633 1.90782 1.48258 1.16060 1.86765 1.23100 0.99689 0.93344 0.96194 1.22426 0.92604 1.02493 0.90334 1.22542 0.99955 0.93566 1.01140 1.21060 0.94881 0.88031 0.87806 1.84754 1.33285 1.69966 1.39827 1.73118 1.12998 1.29344 0.95279 1.73345 1.05259 1.04707 1.19391 1.21756 1.01885 0.96858 0.94788 1.21371 0.95049 1.01487 0.96827 1.21496 0.97215 0.99514 0.96932 1.21491 0.99674 0.99485 0.94781 1.21762 0.95928 0.99823 0.98200 0.93160 0.80397 0.92091 0.90714 0.75032 0.81497 0.82070 0.73415 0.91061 0.93405 0.93366 0.90191 0.92903 0.92970 0.92984 0.91441 0.91708 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.97 55.49 0.78 -27.80 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 3 Si 0.87 21.56 27.67 -169.99 -4.70 16.85 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.27 -6.26 6.62 56.52 0.37 -5.89 16 7 C -0.24 -6.10 9.18 -15.06 -0.14 -6.24 16 8 H 0.09 2.55 7.01 -52.48 -0.37 2.19 16 9 N -0.74 -15.36 3.19 -47.23 -0.15 -15.51 16 10 C 0.20 3.36 0.41 -131.82 -0.05 3.30 16 11 C 0.11 1.94 4.37 -4.04 -0.02 1.93 16 12 N -0.67 -11.67 5.08 -61.22 -0.31 -11.98 16 13 C 0.57 9.75 7.81 -12.29 -0.10 9.66 16 14 O -0.54 -10.18 16.39 5.32 0.09 -10.10 16 15 C 0.02 0.36 6.83 -82.85 -0.57 -0.21 16 16 C -0.05 -0.56 9.72 -38.86 -0.38 -0.94 16 17 C -0.14 -1.31 10.14 -39.10 -0.40 -1.71 16 18 C 0.27 3.04 7.85 -16.77 -0.13 2.90 16 19 O -0.47 -4.17 13.56 -18.26 -0.25 -4.42 16 20 N -0.25 -3.80 11.54 30.55 0.35 -3.45 16 21 N -0.18 -2.86 10.73 33.32 0.36 -2.50 16 22 C -0.11 -1.88 4.51 -26.73 -0.12 -2.00 16 23 C -0.11 -1.78 5.77 -26.73 -0.15 -1.93 16 24 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 25 C -0.12 -1.66 5.75 -26.73 -0.15 -1.81 16 26 C -0.12 -1.71 4.65 -26.73 -0.12 -1.84 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.36 7.67 4.58 -40.82 -0.19 7.48 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.50 7.51 -51.93 -0.39 1.11 16 31 H 0.41 7.22 6.74 -40.82 -0.28 6.94 16 32 H 0.17 1.61 7.71 -52.49 -0.40 1.20 16 33 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.41 1.26 9.06 45.56 0.41 1.67 16 35 H 0.07 1.35 7.23 -51.93 -0.38 0.97 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.55 7.60 -51.93 -0.39 1.16 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.11 6.93 -51.93 -0.36 0.75 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.84 7.29 -51.93 -0.38 0.46 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -33.42 356.39 -6.32 -39.74 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -5.26 Total: 14.21 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.58 Total: -0.42 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 1.02 Total: -61.24 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.16 Total: -14.52 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.70 Total: 16.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.42 -6.32 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115394540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.999 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds