Wall clock time and date at job start Tue Mar 31 2020 12:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00153 * 2 1 4 4 H 1.48506 * 109.47254 * 269.99926 * 3 2 1 5 5 H 1.48504 * 109.47485 * 29.99898 * 3 2 1 6 6 H 1.48503 * 109.47262 * 150.00121 * 3 2 1 7 7 C 1.38807 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99996 * 359.72205 * 7 2 1 9 9 N 1.36935 * 120.00197 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00144 * 173.52152 * 9 7 2 11 11 C 1.53002 * 109.47079 * 63.15979 * 10 9 7 12 12 N 1.46501 * 109.47074 * 54.66410 * 11 10 9 13 13 C 1.34772 * 120.00156 * 176.26094 * 12 11 10 14 14 O 1.21551 * 119.99488 * 359.97438 * 13 12 11 15 15 C 1.47931 * 120.00154 * 179.97438 * 13 12 11 16 16 C 1.39979 * 120.11319 * 179.72289 * 15 13 12 17 17 C 1.38418 * 117.96390 * 179.78074 * 16 15 13 18 18 C 1.39349 * 118.03916 * 0.48476 * 17 16 15 19 19 O 1.35521 * 120.02571 * 179.76877 * 18 17 16 20 20 N 1.32675 * 119.94213 * 359.74734 * 18 17 16 21 21 N 1.28355 * 122.19670 * 0.02562 * 20 18 17 22 22 C 1.52994 * 109.47395 * 303.15687 * 10 9 7 23 23 C 1.53002 * 109.47245 * 300.00190 * 22 10 9 24 24 C 1.53001 * 109.47287 * 299.99819 * 23 22 10 25 25 C 1.52994 * 109.46830 * 59.99927 * 24 23 22 26 26 C 1.53001 * 109.46895 * 183.16016 * 10 9 7 27 27 H 0.97007 * 119.99739 * 0.02562 * 1 2 3 28 28 H 0.96997 * 119.99699 * 353.53102 * 9 7 2 29 29 H 1.09002 * 109.46887 * 174.65993 * 11 10 9 30 30 H 1.08999 * 109.46625 * 294.66121 * 11 10 9 31 31 H 0.96999 * 119.99896 * 356.25629 * 12 11 10 32 32 H 1.07994 * 121.02203 * 0.02562 * 16 15 13 33 33 H 1.08002 * 120.97776 * 180.22851 * 17 16 15 34 34 H 0.96701 * 114.00202 * 269.97448 * 19 18 17 35 35 H 1.09007 * 109.46966 * 60.00111 * 22 10 9 36 36 H 1.08996 * 109.47701 * 179.97438 * 22 10 9 37 37 H 1.08999 * 109.47048 * 179.97438 * 23 22 10 38 38 H 1.08998 * 109.47285 * 60.00016 * 23 22 10 39 39 H 1.09003 * 109.46436 * 300.00259 * 24 23 22 40 40 H 1.08993 * 109.47035 * 179.97438 * 24 23 22 41 41 H 1.09007 * 109.46966 * 180.02562 * 25 24 23 42 42 H 1.08996 * 109.47701 * 60.00337 * 25 24 23 43 43 H 1.08998 * 109.47119 * 180.02562 * 26 10 9 44 44 H 1.08999 * 109.47147 * 300.00065 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1375 0.0036 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4629 0.1415 11 6 3.8024 -3.3703 -1.0509 12 7 4.0933 -2.6561 -2.2965 13 6 3.9668 -3.2872 -3.4805 14 8 3.6118 -4.4492 -3.5149 15 6 4.2600 -2.5659 -4.7383 16 6 4.1350 -3.2209 -5.9691 17 6 4.4160 -2.5022 -7.1183 18 6 4.8159 -1.1746 -6.9793 19 8 5.1055 -0.4351 -8.0774 20 7 4.9123 -0.6351 -5.7711 21 7 4.6483 -1.2969 -4.7035 22 6 3.6843 -3.1578 1.4357 23 6 3.9938 -2.2504 2.6281 24 6 5.4962 -1.9648 2.6752 25 6 5.9239 -1.2699 1.3810 26 6 5.6144 -2.1773 0.1886 27 1 -0.4850 0.8401 -0.0004 28 1 3.8645 -0.3676 -0.0957 29 1 4.4187 -4.2676 -0.9942 30 1 2.7493 -3.6507 -1.0302 31 1 4.3769 -1.7289 -2.2690 32 1 3.8249 -4.2540 -6.0208 33 1 4.3319 -2.9584 -8.0936 34 1 6.0329 -0.4792 -8.3479 35 1 2.6139 -3.3613 1.4022 36 1 4.2289 -4.0960 1.5416 37 1 3.6887 -2.7453 3.5501 38 1 3.4488 -1.3124 2.5221 39 1 6.0412 -2.9028 2.7812 40 1 5.7166 -1.3180 3.5243 41 1 6.9944 -1.0668 1.4143 42 1 5.3790 -0.3319 1.2749 43 1 6.1594 -3.1153 0.2942 44 1 5.9192 -1.6822 -0.7334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115394540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:00 Heat of formation + Delta-G solvation = -38.101480 kcal Electronic energy + Delta-G solvation = -27709.138479 eV Core-core repulsion = 23854.288822 eV Total energy + Delta-G solvation = -3854.849657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42328 -40.94877 -39.87763 -38.60099 -36.02341 -35.17137 -34.33806 -33.32518 -32.56930 -31.57997 -30.76807 -27.40498 -26.05266 -25.40466 -25.28034 -23.51103 -22.26488 -21.65053 -20.25463 -19.90561 -19.73283 -19.29333 -18.71381 -17.29408 -16.95358 -16.57168 -16.34815 -16.32886 -15.98825 -15.41741 -15.33687 -15.08104 -14.93406 -14.68624 -14.41548 -14.26541 -13.93248 -13.60406 -13.42770 -13.31997 -13.00333 -12.94390 -12.85420 -12.66913 -12.36854 -12.10641 -11.89208 -11.68076 -11.48634 -11.37338 -11.30009 -11.13699 -10.94674 -10.76991 -10.73572 -10.68795 -10.02183 -9.24464 -7.94705 -5.26587 -0.77775 -0.40159 1.38797 1.41390 1.44826 1.47408 1.96835 2.23055 2.46462 2.52748 2.88875 3.36725 3.43447 3.55230 3.67220 3.75253 3.87626 3.89122 3.94558 4.07321 4.36027 4.44355 4.46007 4.63950 4.69358 4.72463 4.75657 4.78673 4.88986 4.91271 4.94790 5.03919 5.16683 5.23307 5.35490 5.44013 5.47899 5.51971 5.63221 5.75624 5.89678 6.29414 6.41391 6.45599 7.01149 7.16347 7.34290 7.91269 8.09718 9.27125 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.004352 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.696387 B = 6431.854306 C = 7338.632347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.062 4.062 3 Si 0.936 3.064 4 H -0.289 1.289 5 H -0.307 1.307 6 H -0.244 1.244 7 C -0.194 4.194 8 H 0.057 0.943 9 N -0.733 5.733 10 C 0.193 3.807 11 C 0.118 3.882 12 N -0.678 5.678 13 C 0.568 3.432 14 O -0.564 6.564 15 C 0.002 3.998 16 C -0.049 4.049 17 C -0.116 4.116 18 C 0.275 3.725 19 O -0.474 6.474 20 N -0.292 5.292 21 N -0.206 5.206 22 C -0.111 4.111 23 C -0.109 4.109 24 C -0.108 4.108 25 C -0.116 4.116 26 C -0.113 4.113 27 H 0.251 0.749 28 H 0.365 0.635 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.411 0.589 32 H 0.185 0.815 33 H 0.209 0.791 34 H 0.432 0.568 35 H 0.035 0.965 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.040 0.960 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.093 0.907 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.526 -7.230 -10.352 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.253 4.253 3 Si 0.766 3.234 4 H -0.216 1.216 5 H -0.234 1.234 6 H -0.168 1.168 7 C -0.325 4.325 8 H 0.075 0.925 9 N -0.376 5.376 10 C 0.103 3.897 11 C -0.007 4.007 12 N -0.327 5.327 13 C 0.351 3.649 14 O -0.443 6.443 15 C -0.146 4.146 16 C -0.077 4.077 17 C -0.145 4.145 18 C 0.090 3.910 19 O -0.284 6.284 20 N -0.146 5.146 21 N -0.055 5.055 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.154 4.154 26 C -0.151 4.151 27 H 0.060 0.940 28 H 0.198 0.802 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.248 0.752 32 H 0.202 0.798 33 H 0.226 0.774 34 H 0.296 0.704 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.111 0.889 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.897 -6.637 -9.486 21.315 hybrid contribution -0.430 0.651 -0.867 1.167 sum 17.467 -5.986 -10.353 21.169 Atomic orbital electron populations 1.69876 1.07107 1.25913 1.61005 1.25302 0.95714 1.00449 1.03789 0.85685 0.79226 0.81020 0.77518 1.21616 1.23418 1.16832 1.18753 0.82427 0.92668 1.38640 0.92526 1.42782 1.02243 1.04319 1.88226 1.20060 0.92235 0.85601 0.91840 1.21910 0.99797 0.95465 0.83569 1.45705 1.65182 1.16584 1.05221 1.17724 0.78129 0.85746 0.83284 1.90753 1.49255 1.17006 1.87262 1.22898 1.01784 0.93621 0.96312 1.22661 0.92110 1.03319 0.89628 1.22946 0.97026 0.92234 1.02300 1.21253 0.93565 0.88826 0.87367 1.84716 1.35677 1.69662 1.38382 1.72983 1.14825 1.30258 0.96485 1.73231 1.06411 1.05230 1.20582 1.21731 1.00096 0.98475 0.94774 1.21335 0.96986 0.99400 0.96954 1.21468 0.94932 1.00966 0.97156 1.21503 1.01103 0.98158 0.94642 1.21745 0.93122 1.01436 0.98749 0.93992 0.80151 0.89844 0.94479 0.75155 0.79801 0.77367 0.70364 0.94632 0.90164 0.92316 0.94142 0.90351 0.91968 0.90121 0.93967 0.88885 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.86 13.97 21.65 0.30 -63.56 16 2 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 3 Si 0.94 45.99 27.67 68.60 1.90 47.89 16 4 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 5 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 6 H -0.24 -10.60 6.62 99.48 0.66 -9.94 16 7 C -0.19 -10.40 9.18 84.03 0.77 -9.63 16 8 H 0.06 3.42 7.01 -2.91 -0.02 3.40 16 9 N -0.73 -30.96 3.19 -303.35 -0.97 -31.93 16 10 C 0.19 6.45 0.41 3.60 0.00 6.45 16 11 C 0.12 4.12 4.37 86.38 0.38 4.50 16 12 N -0.68 -23.68 5.08 -465.88 -2.37 -26.05 16 13 C 0.57 19.58 7.81 86.81 0.68 20.26 16 14 O -0.56 -21.29 16.39 -3.88 -0.06 -21.35 16 15 C 0.00 0.05 6.83 42.00 0.29 0.33 16 16 C -0.05 -1.01 9.72 22.74 0.22 -0.79 16 17 C -0.12 -1.73 10.14 22.58 0.23 -1.50 16 18 C 0.27 5.56 7.85 84.83 0.67 6.23 16 19 O -0.47 -6.86 13.56 -88.24 -1.20 -8.06 16 20 N -0.29 -8.48 11.54 -170.01 -1.96 -10.44 16 21 N -0.21 -6.58 10.73 -48.51 -0.52 -7.10 16 22 C -0.11 -3.63 4.51 30.59 0.14 -3.49 16 23 C -0.11 -3.41 5.77 30.60 0.18 -3.23 16 24 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 25 C -0.12 -2.93 5.75 30.59 0.18 -2.75 16 26 C -0.11 -2.91 4.65 30.60 0.14 -2.77 16 27 H 0.25 15.78 8.31 -92.70 -0.77 15.01 16 28 H 0.36 15.27 4.58 -92.71 -0.42 14.84 16 29 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.04 1.56 7.51 -2.39 -0.02 1.55 16 31 H 0.41 14.51 6.74 -92.71 -0.63 13.88 16 32 H 0.18 3.11 7.71 -2.91 -0.02 3.09 16 33 H 0.21 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.43 1.16 9.06 -74.06 -0.67 0.48 16 35 H 0.03 1.39 7.23 -2.38 -0.02 1.38 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 1.57 7.60 -2.39 -0.02 1.56 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.04 1.28 6.93 -2.39 -0.02 1.26 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 1.62 7.29 -2.39 -0.02 1.60 16 Total: -1.00 -78.19 356.39 -1.07 -79.27 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.71 Total: 33.29 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 4.51 Total: 8.03 kcal Atomic # 7 Polarization: -133.56 SS G_CDS: -5.51 Total: -139.07 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.26 Total: -29.41 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Total: -78.19 -1.07 -79.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115394540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.164 kcal (2) G-P(sol) polarization free energy of solvation -78.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds