Wall clock time and date at job start Tue Mar 31 2020 12:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48505 * 109.46764 * 269.99927 * 3 2 1 5 5 H 1.48500 * 109.47188 * 29.99563 * 3 2 1 6 6 H 1.48492 * 109.47231 * 149.99735 * 3 2 1 7 7 C 1.38811 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99461 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99918 * 174.57236 * 9 7 2 11 11 C 1.53000 * 109.47071 * 62.78146 * 10 9 7 12 12 N 1.46493 * 109.47582 * 54.62824 * 11 10 9 13 13 C 1.34771 * 120.00397 * 176.55219 * 12 11 10 14 14 O 1.21516 * 119.99655 * 359.97438 * 13 12 11 15 15 C 1.48147 * 120.00615 * 180.02562 * 13 12 11 16 16 C 1.39892 * 121.12018 * 359.71726 * 15 13 12 17 17 N 1.31763 * 119.79017 * 179.71625 * 16 15 13 18 18 N 1.28281 * 122.41752 * 0.58095 * 17 16 15 19 19 C 1.32280 * 122.43177 * 359.70484 * 18 17 16 20 20 O 1.35701 * 120.07565 * 180.02562 * 19 18 17 21 21 C 1.39234 * 119.84217 * 359.97438 * 19 18 17 22 22 C 1.52997 * 109.47266 * 302.77543 * 10 9 7 23 23 C 1.53004 * 109.47214 * 299.99911 * 22 10 9 24 24 C 1.52992 * 109.47082 * 300.00224 * 23 22 10 25 25 C 1.53003 * 109.47421 * 60.00086 * 24 23 22 26 26 C 1.52997 * 109.46764 * 299.99555 * 25 24 23 27 27 H 0.97005 * 119.99594 * 0.02562 * 1 2 3 28 28 H 0.97004 * 120.00101 * 354.30137 * 9 7 2 29 29 H 1.08997 * 109.47117 * 174.64002 * 11 10 9 30 30 H 1.09008 * 109.46733 * 294.62965 * 11 10 9 31 31 H 0.97003 * 119.99730 * 356.55487 * 12 11 10 32 32 H 1.08005 * 120.10711 * 359.97438 * 16 15 13 33 33 H 0.96698 * 113.99562 * 269.97352 * 20 19 18 34 34 H 1.07991 * 121.11915 * 179.97438 * 21 19 18 35 35 H 1.09004 * 109.46990 * 60.00094 * 22 10 9 36 36 H 1.09002 * 109.47002 * 180.02562 * 22 10 9 37 37 H 1.08998 * 109.47107 * 179.97438 * 23 22 10 38 38 H 1.09002 * 109.47044 * 60.00139 * 23 22 10 39 39 H 1.09003 * 109.47189 * 299.99325 * 24 23 22 40 40 H 1.09003 * 109.47013 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.46888 * 180.02562 * 25 24 23 42 42 H 1.08994 * 109.47375 * 60.00041 * 25 24 23 43 43 H 1.09002 * 109.47495 * 300.00045 * 26 25 24 44 44 H 1.08998 * 109.46949 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0533 -3.6539 -0.1189 11 6 2.9813 -3.8243 1.0855 12 7 2.2044 -3.7036 2.3216 13 6 2.8032 -3.8888 3.5147 14 8 3.9874 -4.1565 3.5651 15 6 2.0175 -3.7673 4.7648 16 6 0.6541 -3.4554 4.7344 17 7 -0.0208 -3.3593 5.8620 18 7 0.5280 -3.5314 7.0086 19 6 1.8109 -3.8238 7.1445 20 8 2.3418 -3.9964 8.3813 21 6 2.6149 -3.9551 6.0153 22 6 2.8825 -3.6462 -1.4047 23 6 1.9544 -3.4759 -2.6091 24 6 0.9570 -4.6352 -2.6523 25 6 0.1277 -4.6429 -1.3666 26 6 1.0558 -4.8134 -0.1622 27 1 -0.4850 0.8401 -0.0004 28 1 0.3592 -2.3901 0.0836 29 1 3.4511 -4.8071 1.0460 30 1 3.7509 -3.0526 1.0632 31 1 1.2590 -3.4903 2.2814 32 1 0.1553 -3.2980 3.7894 33 1 2.6883 -3.1851 8.7772 34 1 3.6647 -4.1929 6.1023 35 1 3.5930 -2.8202 -1.3738 36 1 3.4235 -4.5883 -1.4937 37 1 2.5452 -3.4699 -3.5251 38 1 1.4130 -2.5340 -2.5203 39 1 1.4984 -5.5771 -2.7413 40 1 0.2955 -4.5136 -3.5101 41 1 -0.5825 -5.4692 -1.3973 42 1 -0.4137 -3.7011 -1.2777 43 1 1.5972 -5.7552 -0.2511 44 1 0.4650 -4.8193 0.7537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115583495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:39 Heat of formation + Delta-G solvation = -14.294736 kcal Electronic energy + Delta-G solvation = -27658.257554 eV Core-core repulsion = 23804.440235 eV Total energy + Delta-G solvation = -3853.817319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.44739 -39.67000 -38.53672 -37.79636 -34.71110 -33.60550 -33.26772 -31.68343 -31.12441 -30.31484 -28.71541 -26.48124 -24.65817 -24.45296 -23.87430 -22.22451 -21.05868 -20.43395 -19.25912 -18.45676 -18.13279 -17.49756 -17.14755 -16.45537 -15.89941 -15.58066 -15.20390 -14.90881 -14.59914 -14.16030 -14.03647 -13.76886 -13.66965 -13.61645 -13.30338 -12.84808 -12.48773 -12.27617 -11.98550 -11.79153 -11.66014 -11.52111 -11.22971 -10.94356 -10.85743 -10.61821 -10.41564 -10.40313 -10.24479 -10.10409 -9.97919 -9.86992 -9.70986 -9.55064 -9.40912 -8.97760 -8.73369 -7.11351 -5.89168 -3.18992 0.14309 0.54349 2.68113 2.98831 3.27436 3.35435 3.42471 3.43527 3.48445 4.03109 4.23679 4.47823 4.54076 4.62682 4.82055 5.10013 5.16944 5.20409 5.38662 5.48543 5.50726 5.60448 5.62595 5.70978 5.74853 5.89612 5.95039 6.03278 6.06258 6.10130 6.21403 6.36082 6.38619 6.49826 6.60019 6.71361 6.74853 6.82955 6.93103 7.00645 7.13874 7.62653 7.66632 8.24932 8.28612 8.40312 9.41437 9.92763 10.29340 11.32355 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.004266 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.166467 B = 6561.359367 C = 7753.479906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.005 4.005 3 Si 0.899 3.101 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.710 5.710 10 C 0.190 3.810 11 C 0.113 3.887 12 N -0.683 5.683 13 C 0.554 3.446 14 O -0.539 6.539 15 C -0.105 4.105 16 C 0.066 3.934 17 N -0.212 5.212 18 N -0.247 5.247 19 C 0.252 3.748 20 O -0.472 6.472 21 C -0.080 4.080 22 C -0.114 4.114 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.115 4.115 26 C -0.115 4.115 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.405 0.595 32 H 0.184 0.816 33 H 0.407 0.593 34 H 0.167 0.833 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 -9.716 5.034 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.730 3.270 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.098 3.902 11 C -0.013 4.013 12 N -0.333 5.333 13 C 0.337 3.663 14 O -0.417 6.417 15 C -0.120 4.120 16 C -0.100 4.100 17 N -0.056 5.056 18 N -0.100 5.100 19 C 0.066 3.934 20 O -0.278 6.278 21 C -0.111 4.111 22 C -0.154 4.154 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.153 4.153 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.242 0.758 32 H 0.201 0.799 33 H 0.265 0.735 34 H 0.184 0.816 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.245 -10.055 5.739 11.794 hybrid contribution 1.329 1.424 -0.583 2.034 sum 3.575 -8.631 5.156 10.671 Atomic orbital electron populations 1.69637 1.04934 1.25737 1.57272 1.24669 0.95373 0.97406 1.02706 0.86329 0.78792 0.84335 0.77550 1.21722 1.21902 1.20920 1.19049 0.90941 0.83714 1.42916 0.91292 1.42469 1.06123 0.99373 1.87273 1.19832 0.91292 0.87681 0.91421 1.22034 0.95113 1.00520 0.83644 1.45703 1.14238 1.68232 1.05146 1.17802 0.86779 0.78588 0.83093 1.90768 1.14894 1.48976 1.87054 1.21397 0.95089 1.00011 0.95458 1.24725 0.91504 0.93492 1.00240 1.73091 1.29470 1.09422 0.93585 1.72795 1.10206 1.08604 1.18379 1.20768 0.90126 0.96236 0.86290 1.84799 1.78172 1.37132 1.27665 1.22743 1.02900 0.94722 0.90744 1.21778 0.98057 1.00161 0.95356 1.21372 0.97182 0.99785 0.96378 1.21472 0.97907 0.98414 0.97229 1.21471 0.97493 1.01959 0.94384 1.21707 0.97662 0.97743 0.98155 0.93473 0.77978 0.92283 0.91208 0.75820 0.79910 0.73478 0.81561 0.91692 0.93674 0.93735 0.89775 0.93228 0.92988 0.93209 0.90632 0.92158 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.05 13.07 55.49 0.73 -24.32 16 2 C -0.01 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.90 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -5.54 8.70 -15.06 -0.13 -5.68 16 8 H 0.07 1.66 6.77 -52.49 -0.36 1.30 16 9 N -0.71 -14.13 3.40 -47.23 -0.16 -14.29 16 10 C 0.19 3.05 0.41 -131.82 -0.05 3.00 16 11 C 0.11 1.82 4.37 -4.05 -0.02 1.80 16 12 N -0.68 -10.43 5.05 -61.16 -0.31 -10.74 16 13 C 0.55 8.66 7.80 -12.19 -0.10 8.57 16 14 O -0.54 -9.83 16.49 5.35 0.09 -9.74 16 15 C -0.11 -1.43 5.92 -104.60 -0.62 -2.05 16 16 C 0.07 0.87 10.84 -16.96 -0.18 0.69 16 17 N -0.21 -3.13 11.48 30.79 0.35 -2.78 16 18 N -0.25 -3.57 11.50 30.49 0.35 -3.22 16 19 C 0.25 3.08 7.85 -16.99 -0.13 2.95 16 20 O -0.47 -4.56 13.57 -18.81 -0.26 -4.81 16 21 C -0.08 -0.98 9.72 -38.61 -0.38 -1.36 16 22 C -0.11 -1.80 4.52 -26.73 -0.12 -1.93 16 23 C -0.11 -1.73 5.77 -26.73 -0.15 -1.89 16 24 C -0.11 -1.55 5.92 -26.73 -0.16 -1.70 16 25 C -0.12 -1.61 5.75 -26.73 -0.15 -1.76 16 26 C -0.11 -1.58 4.65 -26.73 -0.12 -1.70 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.39 8.28 6.64 -40.82 -0.27 8.01 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.29 7.51 -51.92 -0.39 0.90 16 31 H 0.40 5.86 5.54 -40.82 -0.23 5.63 16 32 H 0.18 2.11 6.53 -52.48 -0.34 1.77 16 33 H 0.41 1.78 9.06 45.56 0.41 2.19 16 34 H 0.17 1.83 7.79 -52.49 -0.41 1.42 16 35 H 0.06 1.14 7.23 -51.93 -0.38 0.77 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.63 7.60 -51.93 -0.39 1.23 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.24 6.92 -51.93 -0.36 0.88 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.74 7.28 -51.93 -0.38 0.36 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -29.75 357.33 -6.45 -36.20 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.18 Total: 13.55 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.42 Total: -1.28 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.96 Total: -55.35 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.17 Total: -14.56 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.75 -6.45 -36.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115583495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.901 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds