Wall clock time and date at job start Tue Mar 31 2020 12:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48505 * 109.46764 * 269.99927 * 3 2 1 5 5 H 1.48500 * 109.47188 * 29.99563 * 3 2 1 6 6 H 1.48492 * 109.47231 * 149.99735 * 3 2 1 7 7 C 1.38811 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99461 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99918 * 174.57236 * 9 7 2 11 11 C 1.53000 * 109.47071 * 62.78146 * 10 9 7 12 12 N 1.46493 * 109.47582 * 54.62824 * 11 10 9 13 13 C 1.34771 * 120.00397 * 176.55219 * 12 11 10 14 14 O 1.21516 * 119.99655 * 359.97438 * 13 12 11 15 15 C 1.48147 * 120.00615 * 180.02562 * 13 12 11 16 16 C 1.39892 * 121.12018 * 359.71726 * 15 13 12 17 17 N 1.31763 * 119.79017 * 179.71625 * 16 15 13 18 18 N 1.28281 * 122.41752 * 0.58095 * 17 16 15 19 19 C 1.32280 * 122.43177 * 359.70484 * 18 17 16 20 20 O 1.35701 * 120.07565 * 180.02562 * 19 18 17 21 21 C 1.39234 * 119.84217 * 359.97438 * 19 18 17 22 22 C 1.52997 * 109.47266 * 302.77543 * 10 9 7 23 23 C 1.53004 * 109.47214 * 299.99911 * 22 10 9 24 24 C 1.52992 * 109.47082 * 300.00224 * 23 22 10 25 25 C 1.53003 * 109.47421 * 60.00086 * 24 23 22 26 26 C 1.52997 * 109.46764 * 299.99555 * 25 24 23 27 27 H 0.97005 * 119.99594 * 0.02562 * 1 2 3 28 28 H 0.97004 * 120.00101 * 354.30137 * 9 7 2 29 29 H 1.08997 * 109.47117 * 174.64002 * 11 10 9 30 30 H 1.09008 * 109.46733 * 294.62965 * 11 10 9 31 31 H 0.97003 * 119.99730 * 356.55487 * 12 11 10 32 32 H 1.08005 * 120.10711 * 359.97438 * 16 15 13 33 33 H 0.96698 * 113.99562 * 269.97352 * 20 19 18 34 34 H 1.07991 * 121.11915 * 179.97438 * 21 19 18 35 35 H 1.09004 * 109.46990 * 60.00094 * 22 10 9 36 36 H 1.09002 * 109.47002 * 180.02562 * 22 10 9 37 37 H 1.08998 * 109.47107 * 179.97438 * 23 22 10 38 38 H 1.09002 * 109.47044 * 60.00139 * 23 22 10 39 39 H 1.09003 * 109.47189 * 299.99325 * 24 23 22 40 40 H 1.09003 * 109.47013 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.46888 * 180.02562 * 25 24 23 42 42 H 1.08994 * 109.47375 * 60.00041 * 25 24 23 43 43 H 1.09002 * 109.47495 * 300.00045 * 26 25 24 44 44 H 1.08998 * 109.46949 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0533 -3.6539 -0.1189 11 6 2.9813 -3.8243 1.0855 12 7 2.2044 -3.7036 2.3216 13 6 2.8032 -3.8888 3.5147 14 8 3.9874 -4.1565 3.5651 15 6 2.0175 -3.7673 4.7648 16 6 0.6541 -3.4554 4.7344 17 7 -0.0208 -3.3593 5.8620 18 7 0.5280 -3.5314 7.0086 19 6 1.8109 -3.8238 7.1445 20 8 2.3418 -3.9964 8.3813 21 6 2.6149 -3.9551 6.0153 22 6 2.8825 -3.6462 -1.4047 23 6 1.9544 -3.4759 -2.6091 24 6 0.9570 -4.6352 -2.6523 25 6 0.1277 -4.6429 -1.3666 26 6 1.0558 -4.8134 -0.1622 27 1 -0.4850 0.8401 -0.0004 28 1 0.3592 -2.3901 0.0836 29 1 3.4511 -4.8071 1.0460 30 1 3.7509 -3.0526 1.0632 31 1 1.2590 -3.4903 2.2814 32 1 0.1553 -3.2980 3.7894 33 1 2.6883 -3.1851 8.7772 34 1 3.6647 -4.1929 6.1023 35 1 3.5930 -2.8202 -1.3738 36 1 3.4235 -4.5883 -1.4937 37 1 2.5452 -3.4699 -3.5251 38 1 1.4130 -2.5340 -2.5203 39 1 1.4984 -5.5771 -2.7413 40 1 0.2955 -4.5136 -3.5101 41 1 -0.5825 -5.4692 -1.3973 42 1 -0.4137 -3.7011 -1.2777 43 1 1.5972 -5.7552 -0.2511 44 1 0.4650 -4.8193 0.7537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115583495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:38 Heat of formation + Delta-G solvation = -37.726996 kcal Electronic energy + Delta-G solvation = -27659.273653 eV Core-core repulsion = 23804.440235 eV Total energy + Delta-G solvation = -3854.833418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.49247 -40.93557 -39.81203 -38.66610 -36.00151 -35.14929 -34.49464 -32.90967 -32.42503 -31.52672 -30.29378 -27.66157 -25.74652 -25.65365 -25.56072 -23.45281 -22.20478 -21.69084 -20.27795 -19.74992 -19.29144 -18.99399 -18.40820 -17.46833 -17.00075 -16.88438 -16.57218 -16.24985 -15.90743 -15.65271 -15.38881 -15.03261 -14.90539 -14.72350 -14.53354 -14.29174 -13.60050 -13.38063 -13.32300 -13.23703 -12.88863 -12.82124 -12.61524 -12.52797 -12.49226 -12.04402 -11.85894 -11.65603 -11.62410 -11.49695 -11.28764 -11.05611 -10.96939 -10.75846 -10.68991 -10.60512 -10.03975 -8.89332 -7.86007 -5.10125 -0.91824 -0.42262 1.45147 1.49277 1.52880 1.54607 1.88963 2.23654 2.41243 2.59648 3.01513 3.19597 3.42480 3.47812 3.65411 3.83695 3.89788 3.96794 4.03490 4.16151 4.34382 4.42042 4.50224 4.61893 4.69447 4.76194 4.78643 4.80851 4.84503 4.92743 4.98582 5.09317 5.20578 5.25699 5.35234 5.50891 5.53867 5.56411 5.64314 5.69340 5.84140 6.36493 6.40001 6.43074 7.00779 7.37814 7.46523 8.18936 8.44678 9.36033 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.004266 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.166467 B = 6561.359367 C = 7753.479906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.060 4.060 3 Si 0.941 3.059 4 H -0.295 1.295 5 H -0.303 1.303 6 H -0.281 1.281 7 C -0.205 4.205 8 H 0.065 0.935 9 N -0.710 5.710 10 C 0.188 3.812 11 C 0.119 3.881 12 N -0.681 5.681 13 C 0.558 3.442 14 O -0.566 6.566 15 C -0.113 4.113 16 C 0.069 3.931 17 N -0.233 5.233 18 N -0.270 5.270 19 C 0.265 3.735 20 O -0.472 6.472 21 C -0.070 4.070 22 C -0.113 4.113 23 C -0.107 4.107 24 C -0.108 4.108 25 C -0.113 4.113 26 C -0.110 4.110 27 H 0.246 0.754 28 H 0.378 0.622 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.409 0.591 32 H 0.195 0.805 33 H 0.430 0.570 34 H 0.181 0.819 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 -11.870 5.416 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.253 4.253 3 Si 0.774 3.226 4 H -0.223 1.223 5 H -0.231 1.231 6 H -0.207 1.207 7 C -0.338 4.338 8 H 0.082 0.918 9 N -0.350 5.350 10 C 0.098 3.902 11 C -0.007 4.007 12 N -0.331 5.331 13 C 0.342 3.658 14 O -0.446 6.446 15 C -0.127 4.127 16 C -0.097 4.097 17 N -0.076 5.076 18 N -0.122 5.122 19 C 0.078 3.922 20 O -0.281 6.281 21 C -0.101 4.101 22 C -0.152 4.152 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.151 4.151 26 C -0.147 4.147 27 H 0.055 0.945 28 H 0.212 0.788 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.247 0.753 32 H 0.212 0.788 33 H 0.293 0.707 34 H 0.198 0.802 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.049 -12.219 6.137 14.009 hybrid contribution 1.203 2.005 -0.653 2.428 sum 4.252 -10.214 5.483 12.348 Atomic orbital electron populations 1.69737 1.05712 1.25200 1.60182 1.25105 0.95865 0.99388 1.04925 0.85626 0.77825 0.82274 0.76913 1.22292 1.23059 1.20686 1.19184 0.90752 0.84846 1.38984 0.91755 1.42506 1.05808 0.99893 1.86838 1.20049 0.91792 0.86891 0.91510 1.21912 0.94479 1.00525 0.83800 1.45681 1.14351 1.68041 1.05004 1.17997 0.86475 0.77720 0.83566 1.90752 1.16060 1.50334 1.87474 1.21227 0.95091 1.01318 0.95041 1.24841 0.91401 0.93048 1.00385 1.73047 1.30175 1.10399 0.93960 1.72720 1.11408 1.09576 1.18503 1.20743 0.89435 0.94861 0.87183 1.84764 1.77955 1.38909 1.26477 1.22916 1.03491 0.93483 0.90214 1.21768 0.97682 1.00726 0.95074 1.21302 0.97465 0.98801 0.96884 1.21450 0.97510 0.98297 0.97303 1.21435 0.97776 1.01272 0.94588 1.21696 0.97188 0.97319 0.98546 0.94530 0.78791 0.90498 0.93928 0.75328 0.78815 0.70655 0.80156 0.94070 0.90751 0.92641 0.94071 0.90783 0.92540 0.90862 0.93723 0.89663 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.97 13.07 21.65 0.28 -52.69 16 2 C -0.06 -3.12 5.50 84.86 0.47 -2.65 16 3 Si 0.94 44.24 29.55 68.60 2.03 46.27 16 4 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.21 -9.77 8.70 84.03 0.73 -9.04 16 8 H 0.06 3.11 6.77 -2.91 -0.02 3.09 16 9 N -0.71 -28.24 3.40 -303.34 -1.03 -29.27 16 10 C 0.19 5.78 0.41 3.61 0.00 5.78 16 11 C 0.12 3.66 4.37 86.38 0.38 4.03 16 12 N -0.68 -19.94 5.05 -465.70 -2.35 -22.29 16 13 C 0.56 16.74 7.80 86.88 0.68 17.41 16 14 O -0.57 -19.94 16.49 -3.77 -0.06 -20.00 16 15 C -0.11 -2.91 5.92 -19.85 -0.12 -3.03 16 16 C 0.07 1.77 10.84 85.10 0.92 2.70 16 17 N -0.23 -6.70 11.48 -56.51 -0.65 -7.35 16 18 N -0.27 -7.49 11.50 -170.30 -1.96 -9.44 16 19 C 0.26 5.99 7.85 84.87 0.67 6.66 16 20 O -0.47 -7.95 13.57 -90.21 -1.22 -9.17 16 21 C -0.07 -1.59 9.72 22.90 0.22 -1.36 16 22 C -0.11 -3.40 4.52 30.59 0.14 -3.27 16 23 C -0.11 -3.25 5.77 30.59 0.18 -3.08 16 24 C -0.11 -2.68 5.92 30.59 0.18 -2.50 16 25 C -0.11 -2.89 5.75 30.59 0.18 -2.72 16 26 C -0.11 -2.70 4.65 30.60 0.14 -2.56 16 27 H 0.25 13.67 8.31 -92.70 -0.77 12.89 16 28 H 0.38 16.40 6.64 -92.70 -0.62 15.79 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.04 1.55 7.51 -2.38 -0.02 1.54 16 31 H 0.41 11.38 5.54 -92.71 -0.51 10.86 16 32 H 0.20 4.33 6.53 -2.91 -0.02 4.31 16 33 H 0.43 2.60 9.06 -74.06 -0.67 1.93 16 34 H 0.18 3.55 7.79 -2.92 -0.02 3.53 16 35 H 0.04 1.42 7.23 -2.39 -0.02 1.41 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 1.61 7.60 -2.39 -0.02 1.59 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.04 1.43 6.92 -2.39 -0.02 1.41 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 1.51 7.28 -2.39 -0.02 1.49 16 Total: -1.00 -64.66 357.33 -0.94 -65.60 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.73 Total: 31.96 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 4.76 Total: 6.37 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -5.71 Total: -121.04 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.29 Total: -29.17 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -64.66 -0.94 -65.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115583495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.877 kcal (2) G-P(sol) polarization free energy of solvation -64.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds