Wall clock time and date at job start Tue Mar 31 2020 12:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00146 * 2 1 4 4 H 1.48497 * 109.47258 * 270.00812 * 3 2 1 5 5 H 1.48506 * 109.46926 * 30.00650 * 3 2 1 6 6 H 1.48504 * 109.47026 * 150.00139 * 3 2 1 7 7 C 1.37878 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00320 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47586 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47521 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00344 * 179.97438 * 12 11 10 14 14 O 1.21368 * 119.99651 * 359.73054 * 13 12 11 15 15 C 1.49306 * 120.00415 * 180.02562 * 13 12 11 16 16 O 1.21391 * 119.99800 * 359.72855 * 15 13 12 17 17 N 1.34777 * 120.00073 * 179.72999 * 15 13 12 18 18 C 1.39195 * 119.99559 * 180.02562 * 17 15 13 19 19 C 1.36218 * 126.27767 * 0.02562 * 18 17 15 20 20 C 1.39688 * 107.85893 * 180.02562 * 19 18 17 21 21 N 1.30846 * 108.46416 * 0.02562 * 20 19 18 22 22 N 1.35856 * 126.26750 * 179.71451 * 18 17 15 23 23 C 1.46501 * 126.09951 * 359.97221 * 22 18 17 24 24 C 1.52991 * 109.47138 * 90.00166 * 23 22 18 25 25 C 1.52993 * 117.50316 * 243.62357 * 24 23 22 26 26 C 1.53005 * 60.00245 * 252.51104 * 25 24 23 27 27 H 0.96993 * 120.00325 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 29 29 H 1.09001 * 109.46944 * 299.99958 * 9 7 2 30 30 H 1.09007 * 109.47194 * 59.99963 * 10 9 7 31 31 H 1.08998 * 109.47030 * 300.00606 * 10 9 7 32 32 H 1.09007 * 109.46700 * 59.99886 * 11 10 9 33 33 H 1.08998 * 109.47615 * 300.00474 * 11 10 9 34 34 H 0.97004 * 120.00009 * 0.02562 * 12 11 10 35 35 H 0.96996 * 119.99887 * 359.97438 * 17 15 13 36 36 H 1.07999 * 126.06510 * 0.02562 * 19 18 17 37 37 H 1.08005 * 125.76606 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.46971 * 210.00583 * 23 22 18 39 39 H 1.09001 * 109.46913 * 329.99850 * 23 22 18 40 40 H 1.08999 * 115.55091 * 29.33360 * 24 23 22 41 41 H 1.09007 * 117.49649 * 359.97438 * 25 24 23 42 42 H 1.08994 * 117.50345 * 145.01839 * 25 24 23 43 43 H 1.09002 * 117.49160 * 252.51107 * 26 25 24 44 44 H 1.08995 * 117.50125 * 107.48371 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4323 -6.1006 -0.0005 13 6 1.9831 -7.3713 0.0004 14 8 0.7898 -7.5931 0.0067 15 6 2.9533 -8.5062 0.0004 16 8 4.1467 -8.2844 -0.0055 17 7 2.5040 -9.7769 0.0068 18 6 3.4086 -10.8348 0.0073 19 6 4.7670 -10.7338 0.0022 20 6 5.2928 -12.0279 0.0043 21 7 4.2991 -12.8790 0.0097 22 7 3.0984 -12.1575 0.0189 23 6 1.7489 -12.7275 0.0336 24 6 1.2675 -12.9358 -1.4035 25 6 0.0502 -12.1318 -1.8644 26 6 -0.0793 -13.6339 -1.6033 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8895 31 1 2.8719 -3.6043 -0.8904 32 1 0.8533 -5.0451 -0.8897 33 1 0.8539 -5.0447 0.8902 34 1 3.3860 -5.9234 -0.0008 35 1 1.5504 -9.9541 0.0118 36 1 5.3363 -9.8160 -0.0025 37 1 6.3424 -12.2828 0.0010 38 1 1.7647 -13.6851 0.5540 39 1 1.0721 -12.0455 0.5483 40 1 2.0493 -13.1311 -2.1375 41 1 -0.4081 -11.4547 -1.1435 42 1 0.0309 -11.7978 -2.9018 43 1 -0.1836 -14.2879 -2.4690 44 1 -0.6223 -13.9446 -0.7108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116331527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:56 Heat of formation + Delta-G solvation = 31.346969 kcal Electronic energy + Delta-G solvation = -25622.010562 eV Core-core repulsion = 21770.172415 eV Total energy + Delta-G solvation = -3851.838146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.93351 -40.58583 -38.74714 -38.02435 -36.07168 -35.17053 -33.42113 -33.00042 -31.34798 -29.62553 -27.37638 -27.31795 -25.15470 -23.10921 -22.92144 -22.14850 -21.57520 -20.92555 -20.62079 -19.96488 -18.95467 -17.73234 -16.91241 -16.48922 -16.40990 -15.97606 -15.71928 -15.48871 -15.18856 -14.93818 -14.49479 -14.24273 -14.13781 -13.95451 -13.67023 -13.61090 -13.04549 -12.36225 -12.24757 -12.04246 -11.97198 -11.90416 -11.84767 -11.47555 -11.04688 -10.94868 -10.89793 -10.82233 -10.63615 -10.60888 -9.97046 -9.96503 -9.48840 -9.32712 -9.18729 -9.15036 -8.45583 -8.41809 -6.06577 -4.09739 0.86213 1.52721 1.74985 2.34611 2.61817 3.02815 3.19127 3.28653 3.33150 3.35391 3.38513 4.02183 4.13863 4.19960 4.39121 4.41206 4.43908 4.63554 4.84076 4.94352 5.13951 5.14138 5.21581 5.29575 5.39028 5.47601 5.53818 5.59470 5.59536 5.60049 5.79458 5.98579 6.08827 6.41284 6.45910 6.49980 6.59428 6.72301 6.88048 7.13515 7.41923 7.44438 7.56692 7.67605 7.80695 7.91567 8.32257 8.96716 9.54914 11.04666 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.002019 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.164417 B =13864.753409 C =14909.195447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.685 5.685 13 C 0.509 3.491 14 O -0.521 6.521 15 C 0.516 3.484 16 O -0.482 6.482 17 N -0.624 5.624 18 C 0.306 3.694 19 C -0.276 4.276 20 C 0.060 3.940 21 N -0.287 5.287 22 N -0.384 5.384 23 C 0.162 3.838 24 C -0.181 4.181 25 C -0.179 4.179 26 C -0.165 4.165 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.413 0.587 35 H 0.422 0.578 36 H 0.175 0.825 37 H 0.188 0.812 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 -27.796 -0.990 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.336 5.336 13 C 0.287 3.713 14 O -0.398 6.398 15 C 0.298 3.702 16 O -0.353 6.353 17 N -0.273 5.273 18 C 0.087 3.913 19 C -0.307 4.307 20 C -0.126 4.126 21 N -0.108 5.108 22 N -0.172 5.172 23 C 0.041 3.959 24 C -0.200 4.200 25 C -0.216 4.216 26 C -0.203 4.203 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.259 0.741 36 H 0.192 0.808 37 H 0.205 0.795 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.071 -28.834 -0.968 29.013 hybrid contribution 0.502 1.727 -0.087 1.801 sum 3.573 -27.106 -1.054 27.361 Atomic orbital electron populations 1.69954 1.06066 1.26773 1.50483 1.25027 0.94875 0.99364 0.95201 0.86567 0.79818 0.83323 0.78135 1.20630 1.21206 1.19845 1.21188 0.93063 0.90841 1.51065 0.92537 1.19032 0.93779 0.90766 0.97738 1.21943 0.99931 0.92804 1.01448 1.21919 0.91661 0.84501 1.02771 1.46062 1.12520 1.04664 1.70371 1.19507 0.87972 0.84185 0.79623 1.90792 1.15626 1.84493 1.48919 1.20448 0.89260 0.83205 0.77336 1.90730 1.15981 1.83891 1.44654 1.42415 1.10380 1.03432 1.71047 1.18079 0.90513 0.80509 1.02247 1.21716 0.90687 1.00054 1.18256 1.23792 0.99108 0.91018 0.98673 1.77465 0.88785 1.18500 1.26085 1.48782 1.06434 1.01362 1.60616 1.21252 0.78026 1.00804 0.95852 1.22739 0.92756 1.07048 0.97473 1.23175 1.00654 0.94463 1.03271 1.22966 0.98024 0.95476 1.03820 0.92887 0.96178 0.96178 0.92314 0.92310 0.90842 0.90827 0.75071 0.74065 0.80830 0.79520 0.87669 0.89259 0.86906 0.88187 0.88249 0.88223 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.26 5.27 -26.74 -0.14 -2.40 16 11 C 0.11 1.78 5.67 -4.05 -0.02 1.76 16 12 N -0.68 -9.16 5.55 -60.78 -0.34 -9.50 16 13 C 0.51 6.75 7.88 -11.65 -0.09 6.66 16 14 O -0.52 -7.87 16.48 5.48 0.09 -7.78 16 15 C 0.52 6.19 7.85 -11.65 -0.09 6.10 16 16 O -0.48 -6.37 13.60 5.46 0.07 -6.30 16 17 N -0.62 -6.42 5.40 -11.80 -0.06 -6.48 16 18 C 0.31 3.37 7.68 -152.86 -1.17 2.20 16 19 C -0.28 -3.15 9.65 -39.77 -0.38 -3.53 16 20 C 0.06 0.60 12.00 -17.43 -0.21 0.39 16 21 N -0.29 -3.18 12.56 30.59 0.38 -2.80 16 22 N -0.38 -3.82 3.64 -60.29 -0.22 -4.04 16 23 C 0.16 1.11 6.55 -4.05 -0.03 1.09 16 24 C -0.18 -1.20 6.01 -90.63 -0.54 -1.75 16 25 C -0.18 -1.08 10.18 -26.73 -0.27 -1.36 16 26 C -0.17 -0.84 10.25 -26.73 -0.27 -1.12 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.41 4.95 7.94 -40.82 -0.32 4.62 16 35 H 0.42 3.63 7.46 -40.82 -0.30 3.33 16 36 H 0.17 2.09 5.83 -52.49 -0.31 1.78 16 37 H 0.19 1.22 8.06 -52.48 -0.42 0.79 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.47 7.26 -51.93 -0.38 0.10 16 40 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 0.56 8.03 -51.92 -0.42 0.14 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -32.07 380.10 -8.75 -40.82 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.34 Total: 4.24 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -3.78 Total: -4.54 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.50 Total: -48.30 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.16 Total: -14.07 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.07 -8.75 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116331527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.164 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds