Wall clock time and date at job start Tue Mar 31 2020 12:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00146 * 2 1 4 4 H 1.48497 * 109.47258 * 270.00812 * 3 2 1 5 5 H 1.48506 * 109.46926 * 30.00650 * 3 2 1 6 6 H 1.48504 * 109.47026 * 150.00139 * 3 2 1 7 7 C 1.37878 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00320 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47586 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47521 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00344 * 179.97438 * 12 11 10 14 14 O 1.21368 * 119.99651 * 359.73054 * 13 12 11 15 15 C 1.49306 * 120.00415 * 180.02562 * 13 12 11 16 16 O 1.21391 * 119.99800 * 359.72855 * 15 13 12 17 17 N 1.34777 * 120.00073 * 179.72999 * 15 13 12 18 18 C 1.39195 * 119.99559 * 180.02562 * 17 15 13 19 19 C 1.36218 * 126.27767 * 0.02562 * 18 17 15 20 20 C 1.39688 * 107.85893 * 180.02562 * 19 18 17 21 21 N 1.30846 * 108.46416 * 0.02562 * 20 19 18 22 22 N 1.35856 * 126.26750 * 179.71451 * 18 17 15 23 23 C 1.46501 * 126.09951 * 359.97221 * 22 18 17 24 24 C 1.52991 * 109.47138 * 90.00166 * 23 22 18 25 25 C 1.52993 * 117.50316 * 243.62357 * 24 23 22 26 26 C 1.53005 * 60.00245 * 252.51104 * 25 24 23 27 27 H 0.96993 * 120.00325 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 29 29 H 1.09001 * 109.46944 * 299.99958 * 9 7 2 30 30 H 1.09007 * 109.47194 * 59.99963 * 10 9 7 31 31 H 1.08998 * 109.47030 * 300.00606 * 10 9 7 32 32 H 1.09007 * 109.46700 * 59.99886 * 11 10 9 33 33 H 1.08998 * 109.47615 * 300.00474 * 11 10 9 34 34 H 0.97004 * 120.00009 * 0.02562 * 12 11 10 35 35 H 0.96996 * 119.99887 * 359.97438 * 17 15 13 36 36 H 1.07999 * 126.06510 * 0.02562 * 19 18 17 37 37 H 1.08005 * 125.76606 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.46971 * 210.00583 * 23 22 18 39 39 H 1.09001 * 109.46913 * 329.99850 * 23 22 18 40 40 H 1.08999 * 115.55091 * 29.33360 * 24 23 22 41 41 H 1.09007 * 117.49649 * 359.97438 * 25 24 23 42 42 H 1.08994 * 117.50345 * 145.01839 * 25 24 23 43 43 H 1.09002 * 117.49160 * 252.51107 * 26 25 24 44 44 H 1.08995 * 117.50125 * 107.48371 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4323 -6.1006 -0.0005 13 6 1.9831 -7.3713 0.0004 14 8 0.7898 -7.5931 0.0067 15 6 2.9533 -8.5062 0.0004 16 8 4.1467 -8.2844 -0.0055 17 7 2.5040 -9.7769 0.0068 18 6 3.4086 -10.8348 0.0073 19 6 4.7670 -10.7338 0.0022 20 6 5.2928 -12.0279 0.0043 21 7 4.2991 -12.8790 0.0097 22 7 3.0984 -12.1575 0.0189 23 6 1.7489 -12.7275 0.0336 24 6 1.2675 -12.9358 -1.4035 25 6 0.0502 -12.1318 -1.8644 26 6 -0.0793 -13.6339 -1.6033 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8895 31 1 2.8719 -3.6043 -0.8904 32 1 0.8533 -5.0451 -0.8897 33 1 0.8539 -5.0447 0.8902 34 1 3.3860 -5.9234 -0.0008 35 1 1.5504 -9.9541 0.0118 36 1 5.3363 -9.8160 -0.0025 37 1 6.3424 -12.2828 0.0010 38 1 1.7647 -13.6851 0.5540 39 1 1.0721 -12.0455 0.5483 40 1 2.0493 -13.1311 -2.1375 41 1 -0.4081 -11.4547 -1.1435 42 1 0.0309 -11.7978 -2.9018 43 1 -0.1836 -14.2879 -2.4690 44 1 -0.6223 -13.9446 -0.7108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116331527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:55 Heat of formation + Delta-G solvation = 10.991569 kcal Electronic energy + Delta-G solvation = -25622.893238 eV Core-core repulsion = 21770.172415 eV Total energy + Delta-G solvation = -3852.720823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.78162 -41.56721 -39.79919 -38.52745 -37.30626 -36.27325 -35.18449 -33.69510 -33.06339 -30.50993 -28.94059 -28.00090 -26.48906 -24.62340 -23.41253 -22.87666 -22.43129 -22.36240 -21.43547 -20.99502 -19.86788 -18.74473 -18.36053 -17.92413 -17.47453 -16.75263 -16.66927 -16.47163 -16.33963 -16.07608 -15.93698 -15.30239 -15.12740 -14.70474 -14.65245 -14.34367 -14.26037 -13.77412 -13.71515 -13.52921 -12.92711 -12.79735 -12.75745 -12.54112 -12.43845 -12.39905 -12.35235 -11.76735 -11.68441 -11.54439 -11.47295 -11.22555 -11.08414 -10.85531 -10.53641 -10.35163 -10.06413 -9.31251 -8.18674 -6.29050 -0.11820 0.63133 0.88633 1.43135 1.43550 1.53818 1.55287 1.77229 2.04344 2.33706 2.43798 2.75811 3.15035 3.15551 3.47278 3.61351 3.89053 3.95288 4.07207 4.08165 4.13188 4.20290 4.37514 4.46987 4.53380 4.54383 4.72515 4.74367 4.83583 4.93544 4.94539 4.97626 5.11134 5.16941 5.18169 5.20272 5.53376 5.62151 5.71493 5.72931 5.80824 5.86230 6.14367 6.24993 6.46054 6.65583 6.73762 6.88324 7.40297 8.93089 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.002019 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.164417 B =13864.753409 C =14909.195447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.107 4.107 11 C 0.127 3.873 12 N -0.679 5.679 13 C 0.514 3.486 14 O -0.539 6.539 15 C 0.524 3.476 16 O -0.494 6.494 17 N -0.611 5.611 18 C 0.296 3.704 19 C -0.292 4.292 20 C 0.062 3.938 21 N -0.305 5.305 22 N -0.381 5.381 23 C 0.156 3.844 24 C -0.187 4.187 25 C -0.185 4.185 26 C -0.151 4.151 27 H 0.263 0.737 28 H -0.003 1.003 29 H -0.003 1.003 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.422 0.578 35 H 0.430 0.570 36 H 0.166 0.834 37 H 0.217 0.783 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.617 -28.642 -0.777 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.145 4.145 11 C 0.004 3.996 12 N -0.331 5.331 13 C 0.294 3.706 14 O -0.416 6.416 15 C 0.305 3.695 16 O -0.366 6.366 17 N -0.260 5.260 18 C 0.076 3.924 19 C -0.324 4.324 20 C -0.124 4.124 21 N -0.127 5.127 22 N -0.169 5.169 23 C 0.035 3.965 24 C -0.207 4.207 25 C -0.222 4.222 26 C -0.189 4.189 27 H 0.072 0.928 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.260 0.740 35 H 0.269 0.731 36 H 0.184 0.816 37 H 0.233 0.767 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.986 -29.720 -0.758 29.996 hybrid contribution 0.193 1.917 -0.169 1.934 sum 4.178 -27.803 -0.927 28.131 Atomic orbital electron populations 1.70087 1.07755 1.27740 1.51734 1.25965 0.95747 1.03353 0.94913 0.85469 0.78709 0.78605 0.78394 1.19925 1.21077 1.18638 1.21687 0.93728 0.92144 1.50320 0.91751 1.18936 0.94376 0.92543 0.95488 1.21649 0.98651 0.91823 1.02372 1.21537 0.91472 0.84157 1.02390 1.45830 1.12591 1.04245 1.70440 1.19622 0.87870 0.84279 0.78845 1.90789 1.16476 1.84763 1.49615 1.20049 0.88633 0.83310 0.77506 1.90740 1.16240 1.84076 1.45498 1.42230 1.10793 1.02793 1.70215 1.18152 0.90628 0.81055 1.02609 1.21800 0.91075 1.00458 1.19039 1.24253 1.00339 0.90182 0.97581 1.77430 0.89403 1.19234 1.26663 1.48991 1.07148 1.00868 1.59877 1.21541 0.76941 1.01682 0.96290 1.22593 0.92803 1.08413 0.96866 1.23228 1.00424 0.95404 1.03127 1.23068 0.96447 0.94784 1.04572 0.92830 0.98474 0.98457 0.91345 0.91342 0.91341 0.91302 0.74025 0.73097 0.81630 0.76679 0.86635 0.87553 0.88862 0.87555 0.88865 0.87806 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.54 -29.37 9.11 25.60 0.23 -29.14 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.11 -3.85 5.27 30.59 0.16 -3.68 16 11 C 0.13 3.93 5.67 86.38 0.49 4.42 16 12 N -0.68 -17.33 5.55 -464.56 -2.58 -19.91 16 13 C 0.51 13.08 7.88 87.22 0.69 13.77 16 14 O -0.54 -15.70 16.48 -3.30 -0.05 -15.76 16 15 C 0.52 12.00 7.85 87.22 0.68 12.69 16 16 O -0.49 -12.57 13.60 -3.37 -0.05 -12.61 16 17 N -0.61 -11.89 5.40 -309.58 -1.67 -13.56 16 18 C 0.30 6.23 7.68 131.25 1.01 7.24 16 19 C -0.29 -6.44 9.65 22.15 0.21 -6.22 16 20 C 0.06 1.16 12.00 85.19 1.02 2.19 16 21 N -0.31 -6.44 12.56 -57.14 -0.72 -7.16 16 22 N -0.38 -7.17 3.64 -344.67 -1.25 -8.43 16 23 C 0.16 1.91 6.55 86.38 0.57 2.48 16 24 C -0.19 -2.30 6.01 -10.80 -0.06 -2.36 16 25 C -0.18 -2.03 10.18 30.59 0.31 -1.72 16 26 C -0.15 -1.29 10.25 30.60 0.31 -0.97 16 27 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.42 9.43 7.94 -92.71 -0.74 8.69 16 35 H 0.43 6.83 7.46 -92.71 -0.69 6.14 16 36 H 0.17 3.91 5.83 -2.91 -0.02 3.89 16 37 H 0.22 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 0.92 7.26 -2.39 -0.02 0.90 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.02 8.03 -2.38 -0.02 1.00 16 42 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -68.41 380.10 1.83 -66.58 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -0.39 Total: 20.56 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 6.24 Total: 0.37 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -5.94 Total: -104.34 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.10 Total: -28.37 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -68.41 1.83 -66.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116331527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.571 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds