Wall clock time and date at job start Tue Mar 31 2020 13:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35211 * 126.06374 * 2 1 4 4 C 1.40456 * 107.86782 * 180.18263 * 3 2 1 5 5 N 1.39937 * 125.98279 * 179.83029 * 4 3 2 6 6 C 1.34773 * 119.99452 * 359.71353 * 5 4 3 7 7 O 1.21380 * 120.00361 * 0.02562 * 6 5 4 8 8 C 1.49348 * 119.99272 * 180.02562 * 6 5 4 9 9 O 1.21361 * 120.00402 * 5.95754 * 8 6 5 10 10 N 1.34783 * 119.99871 * 185.95291 * 8 6 5 11 11 C 1.46503 * 119.99635 * 5.36970 * 10 8 6 12 12 C 1.46496 * 120.00437 * 185.36659 * 10 8 6 13 13 C 1.53777 * 113.61670 * 240.00390 * 12 10 8 14 14 C 1.53778 * 87.17100 * 220.05701 * 13 12 10 15 15 C 1.53780 * 87.08213 * 25.38905 * 14 13 12 16 16 N 1.31278 * 108.03979 * 359.56823 * 4 3 2 17 17 N 1.34993 * 126.05835 * 179.71313 * 2 1 3 18 18 C 1.46493 * 125.97476 * 359.96881 * 17 2 1 19 19 C 1.50702 * 109.47363 * 269.98090 * 18 17 2 20 20 H 1.08000 * 120.00096 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00089 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99975 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00055 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47073 * 89.99936 * 23 21 19 25 25 H 1.48498 * 109.47104 * 209.99854 * 23 21 19 26 26 H 1.48498 * 109.47002 * 329.99901 * 23 21 19 27 27 H 1.09002 * 109.46948 * 270.29249 * 1 2 3 28 28 H 1.08996 * 109.47260 * 30.28878 * 1 2 3 29 29 H 1.08994 * 109.47672 * 150.29451 * 1 2 3 30 30 H 1.08001 * 126.06946 * 0.04884 * 3 2 1 31 31 H 0.96998 * 120.00044 * 179.71638 * 5 4 3 32 32 H 1.09003 * 109.47142 * 275.24996 * 11 10 8 33 33 H 1.08999 * 109.47278 * 35.24996 * 11 10 8 34 34 H 1.08997 * 109.47379 * 155.25039 * 11 10 8 35 35 H 1.09004 * 112.90241 * 11.25147 * 12 10 8 36 36 H 1.08995 * 113.61323 * 105.46598 * 13 12 10 37 37 H 1.08997 * 113.61073 * 334.64996 * 13 12 10 38 38 H 1.09002 * 113.61298 * 139.93771 * 14 13 12 39 39 H 1.08996 * 113.61765 * 270.83871 * 14 13 12 40 40 H 1.09003 * 113.61417 * 89.11455 * 15 14 13 41 41 H 1.09001 * 113.61351 * 219.92894 * 15 14 13 42 42 H 1.09000 * 109.47063 * 29.97855 * 18 17 2 43 43 H 1.09000 * 109.47428 * 149.97568 * 18 17 2 44 44 H 0.97005 * 120.00329 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3030 1.0930 0.0000 4 6 3.6373 0.6544 -0.0043 5 7 4.7720 1.4734 -0.0090 6 6 4.6351 2.8141 -0.0156 7 8 3.5278 3.3112 -0.0170 8 6 5.8461 3.6882 -0.0213 9 8 6.9499 3.1952 -0.1290 10 7 5.7132 5.0245 0.0932 11 6 4.3937 5.6108 0.3410 12 6 6.8882 5.8908 -0.0301 13 6 7.1641 6.7368 1.2241 14 6 7.5171 7.8929 0.2735 15 6 6.6057 7.2148 -0.7630 16 7 3.6338 -0.6584 0.0027 17 7 2.3016 -1.0913 0.0055 18 6 1.8497 -2.4848 0.0131 19 6 1.6958 -2.9552 1.4365 20 1 1.9133 -2.2835 2.2538 21 6 1.2774 -4.2432 1.6954 22 7 1.0120 -5.0610 0.7003 23 14 1.0873 -4.8265 3.4598 24 1 -0.2946 -4.5486 3.9269 25 1 1.3490 -6.2866 3.5293 26 1 2.0564 -4.1082 4.3258 27 1 -0.3633 0.0052 1.0277 28 1 -0.3633 0.8873 -0.5183 29 1 -0.3634 -0.8925 -0.5092 30 1 1.9716 2.1209 0.0007 31 1 5.6569 1.0761 -0.0076 32 1 3.8702 5.7410 -0.6062 33 1 3.8172 4.9483 0.9866 34 1 4.5118 6.5793 0.8269 35 1 7.7664 5.3639 -0.4033 36 1 8.0100 6.3818 1.8128 37 1 6.2766 6.9239 1.8285 38 1 7.1499 8.8625 0.6100 39 1 8.5676 7.9145 -0.0165 40 1 5.5646 7.5321 -0.7028 41 1 6.9999 7.2472 -1.7786 42 1 0.8907 -2.5585 -0.4996 43 1 2.5838 -3.1076 -0.4981 44 1 0.7180 -5.9672 0.8824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116434472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:31 Heat of formation + Delta-G solvation = 44.101884 kcal Electronic energy + Delta-G solvation = -26455.217711 eV Core-core repulsion = 22603.932659 eV Total energy + Delta-G solvation = -3851.285052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29011 -40.51484 -39.27217 -38.05324 -35.54041 -34.29475 -33.37792 -31.52036 -30.91355 -27.50824 -27.31289 -26.46176 -26.23216 -26.03970 -24.04318 -22.70346 -20.95614 -19.93273 -19.53871 -19.15217 -17.55046 -17.47106 -16.72844 -16.35968 -16.25179 -15.79973 -15.53560 -15.15862 -14.76875 -14.48033 -14.28811 -13.98362 -13.34542 -13.19359 -13.10602 -12.89912 -12.67392 -12.52356 -12.49499 -12.36406 -12.23750 -11.79739 -11.66126 -11.45314 -11.34360 -11.09223 -10.98887 -10.84367 -10.83521 -10.53852 -10.26912 -9.94989 -9.59612 -9.38176 -9.02194 -8.66499 -8.03627 -7.57032 -6.27969 -4.35597 1.19416 2.01787 2.62818 2.99205 3.06342 3.19993 3.26768 3.32539 3.65020 3.72854 4.09713 4.18968 4.26130 4.32947 4.45142 4.45403 4.86784 5.06087 5.22165 5.23916 5.26688 5.31919 5.38245 5.46607 5.51959 5.55348 5.61553 5.68633 5.83919 5.90832 6.05507 6.08771 6.10902 6.36252 6.37158 6.55357 6.83271 6.86246 7.01420 7.28637 7.33574 7.62958 7.64336 7.85377 7.94935 7.98153 8.55340 8.71242 9.30834 10.79492 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027285 B = 0.002386 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.946845 B =11732.356402 C =12018.035997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 C -0.288 4.288 4 C 0.257 3.743 5 N -0.599 5.599 6 C 0.512 3.488 7 O -0.493 6.493 8 C 0.515 3.485 9 O -0.518 6.518 10 N -0.577 5.577 11 C 0.074 3.926 12 C 0.117 3.883 13 C -0.152 4.152 14 C -0.138 4.138 15 C -0.149 4.149 16 N -0.311 5.311 17 N -0.312 5.312 18 C 0.257 3.743 19 C -0.536 4.536 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.422 0.578 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.979 24.317 -2.021 25.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C -0.319 4.319 4 C 0.005 3.995 5 N -0.247 5.247 6 C 0.292 3.708 7 O -0.367 6.367 8 C 0.297 3.703 9 O -0.394 6.394 10 N -0.310 5.310 11 C -0.068 4.068 12 C 0.014 3.986 13 C -0.191 4.191 14 C -0.176 4.176 15 C -0.188 4.188 16 N -0.142 5.142 17 N -0.095 5.095 18 C 0.140 3.860 19 C -0.575 4.575 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.734 3.266 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.197 1.197 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.178 0.822 31 H 0.259 0.741 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.140 0.860 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.404 23.043 -2.131 24.297 hybrid contribution -0.094 -0.025 0.936 0.941 sum 7.310 23.018 -1.195 24.181 Atomic orbital electron populations 1.20343 0.87690 1.02936 1.03264 1.21086 0.95010 0.87075 1.00721 1.21222 0.89462 0.99870 1.21349 1.18896 0.86779 0.89684 1.04117 1.42033 1.08767 1.04359 1.69561 1.19903 0.89669 0.82492 0.78751 1.90675 1.26195 1.73338 1.46478 1.19980 0.88954 0.83273 0.78092 1.90770 1.26621 1.73852 1.48145 1.47663 1.09938 1.04722 1.68665 1.22182 0.82296 0.99413 1.02896 1.22895 0.88999 0.89181 0.97556 1.23415 1.02444 0.96192 0.97005 1.22684 1.00136 0.97972 0.96837 1.23447 1.01147 0.94928 0.99253 1.77339 0.99967 1.08295 1.28584 1.49073 1.00882 1.07965 1.51566 1.19740 0.96065 0.71158 0.99072 1.21299 1.46897 0.98048 0.91253 0.91730 1.24927 0.94642 0.96021 0.98192 1.69915 1.44765 1.07033 1.31179 0.86344 0.78653 0.77934 0.83701 1.20284 1.20851 1.19688 0.90321 0.90738 0.90769 0.82187 0.74074 0.91568 0.88571 0.91377 0.86008 0.90690 0.89443 0.90682 0.89702 0.89165 0.90645 0.92641 0.92868 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.11 36.01 0.36 -1.01 16 2 C 0.09 1.89 6.92 -82.28 -0.57 1.32 16 3 C -0.29 -5.65 9.51 -39.82 -0.38 -6.03 16 4 C 0.26 5.21 8.10 -154.54 -1.25 3.96 16 5 N -0.60 -9.97 5.43 -11.58 -0.06 -10.03 16 6 C 0.51 7.63 7.66 -11.63 -0.09 7.54 16 7 O -0.49 -7.61 10.50 5.47 0.06 -7.55 16 8 C 0.51 6.79 7.72 -11.63 -0.09 6.70 16 9 O -0.52 -7.76 16.00 5.49 0.09 -7.67 16 10 N -0.58 -5.93 3.08 -173.45 -0.53 -6.46 16 11 C 0.07 0.63 7.94 59.85 0.48 1.11 16 12 C 0.12 0.97 4.19 -67.03 -0.28 0.69 16 13 C -0.15 -1.00 7.59 -25.92 -0.20 -1.20 16 14 C -0.14 -0.70 8.08 -25.92 -0.21 -0.91 16 15 C -0.15 -0.90 7.49 -25.83 -0.19 -1.10 16 16 N -0.31 -7.20 12.60 31.41 0.40 -6.80 16 17 N -0.31 -7.31 3.59 -58.33 -0.21 -7.52 16 18 C 0.26 6.52 5.99 -5.20 -0.03 6.49 16 19 C -0.54 -14.65 9.39 -34.44 -0.32 -14.97 16 20 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -24.87 13.29 55.43 0.74 -24.14 16 23 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.23 7.07 -51.93 -0.37 0.86 16 30 H 0.16 2.92 5.91 -52.49 -0.31 2.61 16 31 H 0.42 6.45 8.31 -40.82 -0.34 6.11 16 32 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.10 0.98 5.95 -51.93 -0.31 0.67 16 34 H 0.07 0.41 6.14 -51.93 -0.32 0.09 16 35 H 0.12 1.14 7.28 -51.93 -0.38 0.76 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.55 7.00 -51.93 -0.36 0.19 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.50 6.60 -51.93 -0.34 0.16 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.38 7.04 -51.93 -0.37 1.02 16 43 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -31.26 364.04 -7.96 -39.21 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.02 Total: 5.22 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -2.87 Total: 4.27 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.32 Total: -54.95 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.15 Total: -15.22 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.26 -7.96 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116434472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.316 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds