Wall clock time and date at job start Tue Mar 31 2020 13:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35211 * 126.06374 * 2 1 4 4 C 1.40456 * 107.86782 * 180.18263 * 3 2 1 5 5 N 1.39937 * 125.98279 * 179.83029 * 4 3 2 6 6 C 1.34773 * 119.99452 * 359.71353 * 5 4 3 7 7 O 1.21380 * 120.00361 * 0.02562 * 6 5 4 8 8 C 1.49348 * 119.99272 * 180.02562 * 6 5 4 9 9 O 1.21361 * 120.00402 * 5.95754 * 8 6 5 10 10 N 1.34783 * 119.99871 * 185.95291 * 8 6 5 11 11 C 1.46503 * 119.99635 * 5.36970 * 10 8 6 12 12 C 1.46496 * 120.00437 * 185.36659 * 10 8 6 13 13 C 1.53777 * 113.61670 * 240.00390 * 12 10 8 14 14 C 1.53778 * 87.17100 * 220.05701 * 13 12 10 15 15 C 1.53780 * 87.08213 * 25.38905 * 14 13 12 16 16 N 1.31278 * 108.03979 * 359.56823 * 4 3 2 17 17 N 1.34993 * 126.05835 * 179.71313 * 2 1 3 18 18 C 1.46493 * 125.97476 * 359.96881 * 17 2 1 19 19 C 1.50702 * 109.47363 * 269.98090 * 18 17 2 20 20 H 1.08000 * 120.00096 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00089 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99975 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00055 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47073 * 89.99936 * 23 21 19 25 25 H 1.48498 * 109.47104 * 209.99854 * 23 21 19 26 26 H 1.48498 * 109.47002 * 329.99901 * 23 21 19 27 27 H 1.09002 * 109.46948 * 270.29249 * 1 2 3 28 28 H 1.08996 * 109.47260 * 30.28878 * 1 2 3 29 29 H 1.08994 * 109.47672 * 150.29451 * 1 2 3 30 30 H 1.08001 * 126.06946 * 0.04884 * 3 2 1 31 31 H 0.96998 * 120.00044 * 179.71638 * 5 4 3 32 32 H 1.09003 * 109.47142 * 275.24996 * 11 10 8 33 33 H 1.08999 * 109.47278 * 35.24996 * 11 10 8 34 34 H 1.08997 * 109.47379 * 155.25039 * 11 10 8 35 35 H 1.09004 * 112.90241 * 11.25147 * 12 10 8 36 36 H 1.08995 * 113.61323 * 105.46598 * 13 12 10 37 37 H 1.08997 * 113.61073 * 334.64996 * 13 12 10 38 38 H 1.09002 * 113.61298 * 139.93771 * 14 13 12 39 39 H 1.08996 * 113.61765 * 270.83871 * 14 13 12 40 40 H 1.09003 * 113.61417 * 89.11455 * 15 14 13 41 41 H 1.09001 * 113.61351 * 219.92894 * 15 14 13 42 42 H 1.09000 * 109.47063 * 29.97855 * 18 17 2 43 43 H 1.09000 * 109.47428 * 149.97568 * 18 17 2 44 44 H 0.97005 * 120.00329 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3030 1.0930 0.0000 4 6 3.6373 0.6544 -0.0043 5 7 4.7720 1.4734 -0.0090 6 6 4.6351 2.8141 -0.0156 7 8 3.5278 3.3112 -0.0170 8 6 5.8461 3.6882 -0.0213 9 8 6.9499 3.1952 -0.1290 10 7 5.7132 5.0245 0.0932 11 6 4.3937 5.6108 0.3410 12 6 6.8882 5.8908 -0.0301 13 6 7.1641 6.7368 1.2241 14 6 7.5171 7.8929 0.2735 15 6 6.6057 7.2148 -0.7630 16 7 3.6338 -0.6584 0.0027 17 7 2.3016 -1.0913 0.0055 18 6 1.8497 -2.4848 0.0131 19 6 1.6958 -2.9552 1.4365 20 1 1.9133 -2.2835 2.2538 21 6 1.2774 -4.2432 1.6954 22 7 1.0120 -5.0610 0.7003 23 14 1.0873 -4.8265 3.4598 24 1 -0.2946 -4.5486 3.9269 25 1 1.3490 -6.2866 3.5293 26 1 2.0564 -4.1082 4.3258 27 1 -0.3633 0.0052 1.0277 28 1 -0.3633 0.8873 -0.5183 29 1 -0.3634 -0.8925 -0.5092 30 1 1.9716 2.1209 0.0007 31 1 5.6569 1.0761 -0.0076 32 1 3.8702 5.7410 -0.6062 33 1 3.8172 4.9483 0.9866 34 1 4.5118 6.5793 0.8269 35 1 7.7664 5.3639 -0.4033 36 1 8.0100 6.3818 1.8128 37 1 6.2766 6.9239 1.8285 38 1 7.1499 8.8625 0.6100 39 1 8.5676 7.9145 -0.0165 40 1 5.5646 7.5321 -0.7028 41 1 6.9999 7.2472 -1.7786 42 1 0.8907 -2.5585 -0.4996 43 1 2.5838 -3.1076 -0.4981 44 1 0.7180 -5.9672 0.8824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116434472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:31 Heat of formation + Delta-G solvation = 24.725306 kcal Electronic energy + Delta-G solvation = -26456.057942 eV Core-core repulsion = 22603.932659 eV Total energy + Delta-G solvation = -3852.125283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.58044 -41.81288 -40.25357 -39.03557 -36.80061 -35.56495 -35.07659 -33.08433 -32.67242 -28.95221 -28.24236 -27.91443 -27.48336 -26.55107 -25.33994 -24.26488 -22.17461 -21.41016 -20.59763 -20.05155 -18.85008 -18.61321 -18.50359 -17.69262 -17.40436 -17.10432 -16.70916 -16.32515 -16.00099 -15.98039 -15.55530 -15.30901 -14.78323 -14.33702 -14.22251 -13.83909 -13.76217 -13.73211 -13.66764 -13.44203 -13.29322 -13.16347 -13.01216 -12.88329 -12.66301 -12.55759 -12.25481 -12.17899 -12.06648 -11.57181 -11.51889 -11.42442 -11.34006 -10.73968 -10.54342 -9.85037 -9.65294 -9.23023 -8.34010 -6.51154 0.02206 0.83171 1.07185 1.37502 1.38964 1.49905 1.68224 1.77127 2.21388 2.32105 2.44753 2.96395 3.07556 3.57156 3.66770 3.80397 3.93334 3.95032 4.10717 4.19633 4.40343 4.59622 4.65947 4.68771 4.72102 4.77774 4.79801 4.84658 4.91056 4.93354 4.95103 5.03381 5.06401 5.10717 5.13497 5.19529 5.30431 5.49142 5.52666 5.79003 5.80486 5.85556 6.03973 6.22577 6.47376 6.60313 6.73306 6.93840 7.19713 8.72409 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027285 B = 0.002386 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.946845 B =11732.356402 C =12018.035997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.090 3.910 3 C -0.290 4.290 4 C 0.266 3.734 5 N -0.602 5.602 6 C 0.515 3.485 7 O -0.495 6.495 8 C 0.515 3.485 9 O -0.543 6.543 10 N -0.565 5.565 11 C 0.071 3.929 12 C 0.099 3.901 13 C -0.149 4.149 14 C -0.127 4.127 15 C -0.142 4.142 16 N -0.356 5.356 17 N -0.338 5.338 18 C 0.274 3.726 19 C -0.553 4.553 20 H 0.050 0.950 21 C 0.023 3.977 22 N -0.917 5.917 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.275 1.275 26 H -0.277 1.277 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.178 0.822 31 H 0.426 0.574 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.023 0.977 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.398 26.994 -1.203 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C -0.321 4.321 4 C 0.013 3.987 5 N -0.252 5.252 6 C 0.296 3.704 7 O -0.368 6.368 8 C 0.297 3.703 9 O -0.421 6.421 10 N -0.296 5.296 11 C -0.070 4.070 12 C -0.003 4.003 13 C -0.188 4.188 14 C -0.165 4.165 15 C -0.180 4.180 16 N -0.187 5.187 17 N -0.121 5.121 18 C 0.155 3.845 19 C -0.591 4.591 20 H 0.068 0.932 21 C -0.179 4.179 22 N -0.556 5.556 23 Si 0.795 3.205 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.202 1.202 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.195 0.805 31 H 0.264 0.736 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.814 25.788 -1.320 26.706 hybrid contribution 0.129 -0.687 0.644 0.950 sum 6.944 25.102 -0.676 26.053 Atomic orbital electron populations 1.20498 0.84923 1.04426 1.04141 1.21831 0.96847 0.86242 0.99137 1.21463 0.89011 1.00372 1.21214 1.19201 0.88253 0.89276 1.01976 1.42161 1.08044 1.04773 1.70197 1.20324 0.90419 0.81917 0.77740 1.90655 1.26662 1.73293 1.46170 1.19657 0.87744 0.84134 0.78782 1.90765 1.26951 1.74409 1.49972 1.47846 1.11398 1.03716 1.66622 1.22292 0.81195 1.00390 1.03137 1.23221 0.87873 0.89543 0.99696 1.23433 1.02632 0.96239 0.96481 1.22664 1.00354 0.97980 0.95520 1.23454 1.02047 0.92962 0.99511 1.77252 1.00390 1.09988 1.31029 1.48855 1.01561 1.07791 1.53905 1.19293 0.95038 0.72301 0.97886 1.21416 1.47536 0.98441 0.91694 0.93199 1.25730 0.93970 0.95891 1.02263 1.69998 1.44982 1.07460 1.33114 0.85353 0.79018 0.77515 0.78587 1.18734 1.20016 1.20206 0.89613 0.87114 0.91346 0.80463 0.73581 0.91084 0.90071 0.88216 0.87472 0.91138 0.88741 0.89095 0.89192 0.88147 0.90363 0.92605 0.95844 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.56 10.11 71.24 0.72 -1.84 16 2 C 0.09 3.65 6.92 41.38 0.29 3.93 16 3 C -0.29 -11.21 9.51 22.11 0.21 -11.00 16 4 C 0.27 10.92 8.10 133.40 1.08 12.00 16 5 N -0.60 -20.26 5.43 -308.89 -1.68 -21.93 16 6 C 0.51 15.11 7.66 87.24 0.67 15.77 16 7 O -0.49 -14.66 10.50 -3.34 -0.04 -14.69 16 8 C 0.52 13.35 7.72 87.24 0.67 14.02 16 9 O -0.54 -16.36 16.00 -3.28 -0.05 -16.41 16 10 N -0.56 -10.76 3.08 -821.02 -2.53 -13.29 16 11 C 0.07 1.05 7.94 127.77 1.01 2.06 16 12 C 0.10 1.48 4.19 45.57 0.19 1.67 16 13 C -0.15 -1.63 7.59 31.12 0.24 -1.39 16 14 C -0.13 -0.92 8.08 31.12 0.25 -0.66 16 15 C -0.14 -1.32 7.49 31.18 0.23 -1.09 16 16 N -0.36 -17.03 12.60 -54.53 -0.69 -17.72 16 17 N -0.34 -16.29 3.59 -338.46 -1.22 -17.51 16 18 C 0.27 14.42 5.99 85.64 0.51 14.93 16 19 C -0.55 -30.90 9.39 25.60 0.24 -30.66 16 20 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 21 C 0.02 1.23 5.46 84.65 0.46 1.69 16 22 N -0.92 -51.73 13.29 21.45 0.28 -51.44 16 23 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 27 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.07 2.22 7.07 -2.39 -0.02 2.20 16 30 H 0.18 6.15 5.91 -2.91 -0.02 6.14 16 31 H 0.43 13.44 8.31 -92.71 -0.77 12.67 16 32 H 0.07 1.02 8.10 -2.39 -0.02 1.01 16 33 H 0.08 1.50 5.95 -2.39 -0.01 1.49 16 34 H 0.10 0.86 6.14 -2.39 -0.01 0.84 16 35 H 0.11 1.95 7.28 -2.39 -0.02 1.93 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.91 7.00 -2.39 -0.02 0.89 16 38 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 0.76 6.60 -2.39 -0.02 0.74 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 2.88 7.04 -2.39 -0.02 2.87 16 43 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -68.43 364.04 3.17 -65.27 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.27 Total: 23.23 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 6.78 Total: 19.44 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -5.83 Total: -121.89 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.09 Total: -31.10 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.43 3.17 -65.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116434472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.991 kcal (2) G-P(sol) polarization free energy of solvation -68.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds