Wall clock time and date at job start Tue Mar 31 2020 12:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99674 * 2 1 4 4 H 1.48498 * 109.46958 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47074 * 300.00129 * 3 2 1 6 6 H 1.48492 * 109.47126 * 60.00194 * 3 2 1 7 7 C 1.37877 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47158 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46997 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.46878 * 179.97438 * 11 10 9 13 13 C 1.34769 * 119.99730 * 179.97438 * 12 11 10 14 14 O 1.21346 * 120.00686 * 0.02562 * 13 12 11 15 15 C 1.49455 * 119.99794 * 179.97438 * 13 12 11 16 16 O 1.21349 * 120.00289 * 0.02562 * 15 13 12 17 17 N 1.34782 * 120.00240 * 180.02562 * 15 13 12 18 18 C 1.46494 * 120.00310 * 180.02562 * 17 15 13 19 19 H 1.09001 * 109.37549 * 325.14446 * 18 17 15 20 20 C 1.53025 * 109.42635 * 205.28512 * 18 17 15 21 21 C 1.53383 * 109.72639 * 168.20717 * 20 18 17 22 22 C 1.50876 * 108.19864 * 50.54681 * 21 20 18 23 23 C 1.34574 * 128.33238 * 163.33728 * 22 21 20 24 24 N 1.35384 * 107.60540 * 180.22544 * 23 22 21 25 25 H 0.96996 * 126.01729 * 179.97438 * 24 23 22 26 26 N 1.40314 * 107.97741 * 359.87819 * 24 23 22 27 27 C 1.30131 * 108.12341 * 0.04264 * 26 24 23 28 28 C 1.50948 * 128.28490 * 180.12551 * 27 26 24 29 29 H 0.97005 * 120.00018 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.46716 * 60.00096 * 9 7 2 31 31 H 1.09004 * 109.47580 * 300.00387 * 9 7 2 32 32 H 1.08998 * 109.47300 * 59.99804 * 10 9 7 33 33 H 1.09005 * 109.46766 * 299.99918 * 10 9 7 34 34 H 1.09001 * 109.47484 * 60.00061 * 11 10 9 35 35 H 1.08995 * 109.46995 * 299.99263 * 11 10 9 36 36 H 0.97003 * 119.99724 * 359.97438 * 12 11 10 37 37 H 0.97000 * 119.99299 * 359.97438 * 17 15 13 38 38 H 1.08999 * 109.42356 * 288.28870 * 20 18 17 39 39 H 1.09003 * 109.42432 * 48.18068 * 20 18 17 40 40 H 1.09007 * 109.71412 * 170.22265 * 21 20 18 41 41 H 1.08997 * 109.71881 * 290.82149 * 21 20 18 42 42 H 1.07999 * 126.18941 * 0.09320 * 23 22 21 43 43 H 1.09002 * 109.71811 * 43.56521 * 28 27 26 44 44 H 1.09001 * 109.71810 * 282.96273 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4804 -4.9870 0.0033 12 7 2.4325 -6.1006 0.0037 13 6 1.9832 -7.3712 0.0047 14 8 0.7902 -7.5930 0.0048 15 6 2.9545 -8.5071 0.0045 16 8 4.1475 -8.2854 0.0039 17 7 2.5053 -9.7779 0.0050 18 6 3.4573 -10.8913 0.0054 19 1 4.3336 -10.6181 -0.5824 20 6 2.7962 -12.1264 -0.6105 21 6 3.8575 -13.1992 -0.8847 22 6 4.6662 -13.3946 0.3739 23 6 5.4787 -14.4186 0.6935 24 7 5.9878 -14.1693 1.9229 25 1 6.6053 -14.7366 2.4104 26 7 5.4666 -12.9446 2.3671 27 6 4.6776 -12.4809 1.4420 28 6 3.8847 -11.1965 1.4464 29 1 -0.4850 0.8401 0.0004 30 1 0.6242 -2.5574 -0.8881 31 1 0.6248 -2.5563 0.8919 32 1 2.8721 -3.6035 0.8926 33 1 2.8721 -3.6050 -0.8874 34 1 0.8540 -5.0454 -0.8869 35 1 0.8536 -5.0443 0.8931 36 1 3.3862 -5.9232 0.0032 37 1 1.5516 -9.9551 0.0059 38 1 2.0513 -12.5213 0.0804 39 1 2.3115 -11.8492 -1.5467 40 1 3.3715 -14.1357 -1.1587 41 1 4.5097 -12.8728 -1.6948 42 1 5.6853 -15.2838 0.0809 43 1 4.5035 -10.3836 1.8264 44 1 3.0019 -11.3115 2.0753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117266444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:25 Heat of formation + Delta-G solvation = -19.110195 kcal Electronic energy + Delta-G solvation = -25427.934600 eV Core-core repulsion = 21573.908466 eV Total energy + Delta-G solvation = -3854.026133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.87006 -40.63563 -38.75362 -37.18830 -35.64905 -33.93281 -33.25837 -32.53605 -31.23422 -30.09855 -28.91881 -27.24494 -25.42098 -24.04451 -22.68021 -21.76735 -21.43316 -20.75945 -20.19175 -19.38227 -18.31012 -17.88420 -17.02024 -16.35065 -16.05595 -15.88106 -15.57086 -15.14206 -14.93611 -14.49991 -14.43599 -14.21609 -14.08438 -13.75086 -13.62131 -13.32285 -13.14942 -12.43658 -12.31193 -12.08941 -11.87276 -11.78626 -11.72800 -11.61733 -11.32049 -10.92360 -10.78375 -10.74987 -10.57328 -9.89549 -9.80368 -9.76104 -9.52323 -9.35935 -9.11022 -8.96626 -8.84835 -8.37536 -6.02162 -4.04998 1.42447 1.49921 2.25762 2.32492 2.50818 3.23391 3.30838 3.38459 3.42398 3.62051 4.05762 4.26747 4.37640 4.44459 4.51786 4.59644 4.71774 4.85959 4.99644 5.12209 5.18073 5.33396 5.33941 5.45984 5.58041 5.60710 5.65648 5.68712 5.70496 5.78811 6.03467 6.09351 6.24250 6.28400 6.55331 6.70503 6.87962 6.93142 6.96346 7.28083 7.42059 7.62793 7.73472 7.74244 7.96421 8.06442 8.37769 9.01787 9.59429 11.09090 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033948 B = 0.001758 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.580848 B =15926.277381 C =16389.479283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.526 6.526 15 C 0.510 3.490 16 O -0.517 6.517 17 N -0.701 5.701 18 C 0.150 3.850 19 H 0.098 0.902 20 C -0.126 4.126 21 C -0.035 4.035 22 C -0.240 4.240 23 C 0.063 3.937 24 N -0.486 5.486 25 H 0.439 0.561 26 N -0.284 5.284 27 C 0.090 3.910 28 C -0.052 4.052 29 H 0.260 0.740 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.411 0.589 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.177 0.823 43 H 0.091 0.909 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.687 -33.084 -0.811 34.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.280 3.720 14 O -0.403 6.403 15 C 0.291 3.709 16 O -0.392 6.392 17 N -0.354 5.354 18 C 0.045 3.955 19 H 0.116 0.884 20 C -0.165 4.165 21 C -0.074 4.074 22 C -0.252 4.252 23 C -0.083 4.083 24 N -0.194 5.194 25 H 0.283 0.717 26 N -0.106 5.106 27 C -0.080 4.080 28 C -0.093 4.093 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.251 0.749 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.194 0.806 43 H 0.109 0.891 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.035 -32.735 0.327 33.960 hybrid contribution 0.510 0.389 -0.436 0.775 sum 9.544 -32.346 -0.109 33.725 Atomic orbital electron populations 1.69976 1.06046 1.26584 1.50679 1.25030 0.94865 0.99328 0.95257 0.86519 0.80091 0.83710 0.77581 1.19731 1.21012 1.21007 1.21243 0.93106 0.90882 1.50793 0.92506 1.19042 0.93817 0.90809 0.97731 1.21929 0.99874 0.92963 1.01326 1.21846 0.91733 0.84718 1.02539 1.46076 1.12240 1.05009 1.70964 1.20000 0.88456 0.84509 0.79076 1.90760 1.15986 1.84695 1.48869 1.20387 0.88809 0.84458 0.77236 1.90772 1.16225 1.84721 1.47474 1.45796 1.11460 1.04542 1.73593 1.21011 0.93133 0.85532 0.95842 0.88403 1.21854 0.98543 0.94206 1.01849 1.19913 0.95373 0.98636 0.93430 1.20144 1.07686 0.97268 1.00082 1.22114 0.97292 1.00405 0.88501 1.46405 1.39754 1.18534 1.14717 0.71663 1.77064 1.15011 0.95926 1.22613 1.22161 0.96665 0.96968 0.92173 1.20506 0.98979 0.92197 0.97587 0.92989 0.96172 0.96182 0.92415 0.92427 0.91078 0.91075 0.75294 0.74912 0.90684 0.90157 0.90455 0.90741 0.80602 0.89085 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.11 1.93 5.67 -4.04 -0.02 1.91 16 12 N -0.69 -10.22 5.55 -60.73 -0.34 -10.56 16 13 C 0.50 7.25 7.89 -11.59 -0.09 7.16 16 14 O -0.53 -8.65 16.48 5.50 0.09 -8.56 16 15 C 0.51 6.40 7.86 -11.58 -0.09 6.31 16 16 O -0.52 -7.50 16.13 5.50 0.09 -7.42 16 17 N -0.70 -6.53 5.07 -54.04 -0.27 -6.80 16 18 C 0.15 1.21 2.40 -67.73 -0.16 1.05 16 19 H 0.10 0.93 7.53 -51.93 -0.39 0.54 16 20 C -0.13 -0.70 5.33 -26.52 -0.14 -0.84 16 21 C -0.03 -0.18 6.28 -27.60 -0.17 -0.35 16 22 C -0.24 -1.75 5.89 -104.96 -0.62 -2.37 16 23 C 0.06 0.35 11.96 -17.28 -0.21 0.15 16 24 N -0.49 -3.31 7.38 30.39 0.22 -3.08 16 25 H 0.44 1.57 8.96 -182.44 -1.64 -0.06 16 26 N -0.28 -2.99 12.68 33.76 0.43 -2.56 16 27 C 0.09 0.86 7.10 -82.32 -0.58 0.28 16 28 C -0.05 -0.47 5.88 -27.57 -0.16 -0.64 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 30 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.41 5.57 7.95 -40.82 -0.32 5.25 16 37 H 0.41 3.34 8.08 -40.82 -0.33 3.01 16 38 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -34.73 372.79 -9.11 -43.84 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.72 Total: 1.69 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.94 Total: -2.74 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.78 Total: -48.92 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.18 Total: -15.98 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.73 -9.11 -43.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117266444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.728 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds