Wall clock time and date at job start Tue Mar 31 2020 12:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99674 * 2 1 4 4 H 1.48498 * 109.46958 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47074 * 300.00129 * 3 2 1 6 6 H 1.48492 * 109.47126 * 60.00194 * 3 2 1 7 7 C 1.37877 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47158 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46997 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.46878 * 179.97438 * 11 10 9 13 13 C 1.34769 * 119.99730 * 179.97438 * 12 11 10 14 14 O 1.21346 * 120.00686 * 0.02562 * 13 12 11 15 15 C 1.49455 * 119.99794 * 179.97438 * 13 12 11 16 16 O 1.21349 * 120.00289 * 0.02562 * 15 13 12 17 17 N 1.34782 * 120.00240 * 180.02562 * 15 13 12 18 18 C 1.46494 * 120.00310 * 180.02562 * 17 15 13 19 19 H 1.09001 * 109.37549 * 325.14446 * 18 17 15 20 20 C 1.53025 * 109.42635 * 205.28512 * 18 17 15 21 21 C 1.53383 * 109.72639 * 168.20717 * 20 18 17 22 22 C 1.50876 * 108.19864 * 50.54681 * 21 20 18 23 23 C 1.34574 * 128.33238 * 163.33728 * 22 21 20 24 24 N 1.35384 * 107.60540 * 180.22544 * 23 22 21 25 25 H 0.96996 * 126.01729 * 179.97438 * 24 23 22 26 26 N 1.40314 * 107.97741 * 359.87819 * 24 23 22 27 27 C 1.30131 * 108.12341 * 0.04264 * 26 24 23 28 28 C 1.50948 * 128.28490 * 180.12551 * 27 26 24 29 29 H 0.97005 * 120.00018 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.46716 * 60.00096 * 9 7 2 31 31 H 1.09004 * 109.47580 * 300.00387 * 9 7 2 32 32 H 1.08998 * 109.47300 * 59.99804 * 10 9 7 33 33 H 1.09005 * 109.46766 * 299.99918 * 10 9 7 34 34 H 1.09001 * 109.47484 * 60.00061 * 11 10 9 35 35 H 1.08995 * 109.46995 * 299.99263 * 11 10 9 36 36 H 0.97003 * 119.99724 * 359.97438 * 12 11 10 37 37 H 0.97000 * 119.99299 * 359.97438 * 17 15 13 38 38 H 1.08999 * 109.42356 * 288.28870 * 20 18 17 39 39 H 1.09003 * 109.42432 * 48.18068 * 20 18 17 40 40 H 1.09007 * 109.71412 * 170.22265 * 21 20 18 41 41 H 1.08997 * 109.71881 * 290.82149 * 21 20 18 42 42 H 1.07999 * 126.18941 * 0.09320 * 23 22 21 43 43 H 1.09002 * 109.71811 * 43.56521 * 28 27 26 44 44 H 1.09001 * 109.71810 * 282.96273 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4804 -4.9870 0.0033 12 7 2.4325 -6.1006 0.0037 13 6 1.9832 -7.3712 0.0047 14 8 0.7902 -7.5930 0.0048 15 6 2.9545 -8.5071 0.0045 16 8 4.1475 -8.2854 0.0039 17 7 2.5053 -9.7779 0.0050 18 6 3.4573 -10.8913 0.0054 19 1 4.3336 -10.6181 -0.5824 20 6 2.7962 -12.1264 -0.6105 21 6 3.8575 -13.1992 -0.8847 22 6 4.6662 -13.3946 0.3739 23 6 5.4787 -14.4186 0.6935 24 7 5.9878 -14.1693 1.9229 25 1 6.6053 -14.7366 2.4104 26 7 5.4666 -12.9446 2.3671 27 6 4.6776 -12.4809 1.4420 28 6 3.8847 -11.1965 1.4464 29 1 -0.4850 0.8401 0.0004 30 1 0.6242 -2.5574 -0.8881 31 1 0.6248 -2.5563 0.8919 32 1 2.8721 -3.6035 0.8926 33 1 2.8721 -3.6050 -0.8874 34 1 0.8540 -5.0454 -0.8869 35 1 0.8536 -5.0443 0.8931 36 1 3.3862 -5.9232 0.0032 37 1 1.5516 -9.9551 0.0059 38 1 2.0513 -12.5213 0.0804 39 1 2.3115 -11.8492 -1.5467 40 1 3.3715 -14.1357 -1.1587 41 1 4.5097 -12.8728 -1.6948 42 1 5.6853 -15.2838 0.0809 43 1 4.5035 -10.3836 1.8264 44 1 3.0019 -11.3115 2.0753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117266444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:25 Heat of formation + Delta-G solvation = -45.207364 kcal Electronic energy + Delta-G solvation = -25429.066258 eV Core-core repulsion = 21573.908466 eV Total energy + Delta-G solvation = -3855.157791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43491 -41.69205 -39.83439 -37.97080 -37.10089 -35.30791 -34.54236 -33.10021 -33.02377 -30.75246 -29.48758 -28.93817 -26.56687 -25.16862 -23.91523 -22.54329 -22.34698 -21.95504 -21.31761 -20.13244 -19.30000 -18.50610 -18.42353 -17.95952 -17.16818 -16.89079 -16.51579 -16.23282 -16.19067 -16.04036 -15.33813 -15.19521 -14.75374 -14.63970 -14.56697 -14.27216 -13.98842 -13.77382 -13.75376 -13.49506 -12.99869 -12.91649 -12.77841 -12.56302 -12.47847 -12.36535 -12.23578 -11.83728 -11.69168 -11.55171 -11.36769 -11.20923 -10.69407 -10.54616 -10.42950 -10.34153 -10.25699 -9.33462 -8.18930 -6.29597 0.32130 0.98152 1.27023 1.42045 1.42697 1.55626 1.76035 1.99804 2.13232 2.42132 2.63017 3.15010 3.37098 3.55306 3.71121 3.87787 4.04387 4.10138 4.20089 4.26488 4.33200 4.45945 4.54316 4.63621 4.66439 4.82416 4.88456 4.91345 4.93259 4.97783 5.16195 5.17689 5.20558 5.24891 5.29809 5.36652 5.52831 5.70094 5.72078 5.85509 5.92008 6.24040 6.35815 6.50325 6.72064 6.73283 6.87534 6.93078 7.39722 8.93054 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033948 B = 0.001758 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.580848 B =15926.277381 C =16389.479283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.687 5.687 13 C 0.502 3.498 14 O -0.546 6.546 15 C 0.516 3.484 16 O -0.539 6.539 17 N -0.682 5.682 18 C 0.154 3.846 19 H 0.084 0.916 20 C -0.121 4.121 21 C -0.030 4.030 22 C -0.259 4.259 23 C 0.077 3.923 24 N -0.481 5.481 25 H 0.451 0.549 26 N -0.333 5.333 27 C 0.070 3.930 28 C -0.049 4.049 29 H 0.263 0.737 30 H -0.002 1.002 31 H -0.003 1.003 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.419 0.581 37 H 0.423 0.577 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.806 -34.950 -1.743 36.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.014 4.014 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.340 5.340 13 C 0.283 3.717 14 O -0.424 6.424 15 C 0.297 3.703 16 O -0.416 6.416 17 N -0.335 5.335 18 C 0.049 3.951 19 H 0.103 0.897 20 C -0.159 4.159 21 C -0.069 4.069 22 C -0.270 4.270 23 C -0.069 4.069 24 N -0.191 5.191 25 H 0.297 0.703 26 N -0.156 5.156 27 C -0.098 4.098 28 C -0.090 4.090 29 H 0.072 0.928 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.256 0.744 37 H 0.261 0.739 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.236 0.764 43 H 0.084 0.916 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.165 -34.642 -0.597 36.108 hybrid contribution 0.165 0.865 -0.120 0.888 sum 10.330 -33.778 -0.717 35.329 Atomic orbital electron populations 1.70106 1.07760 1.27687 1.51712 1.25976 0.95763 1.03367 0.94830 0.85395 0.79116 0.78847 0.77655 1.18527 1.20499 1.20561 1.21712 0.93706 0.92168 1.50385 0.91830 1.18945 0.94367 0.92567 0.95490 1.21643 0.98635 0.91983 1.02173 1.21476 0.91570 0.84474 1.02047 1.45895 1.12247 1.04736 1.71090 1.20319 0.88522 0.84747 0.78160 1.90750 1.16939 1.85008 1.49672 1.19985 0.87922 0.84840 0.77581 1.90772 1.16768 1.85001 1.49055 1.45778 1.12257 1.03772 1.71688 1.21095 0.92668 0.85999 0.95306 0.89740 1.21859 0.98775 0.92884 1.02345 1.19969 0.95037 0.99395 0.92450 1.20495 1.08828 0.97275 1.00415 1.22803 0.95462 1.00878 0.87807 1.46465 1.39622 1.17649 1.15350 0.70263 1.76965 1.16522 0.97982 1.24164 1.22294 0.96919 0.97397 0.93186 1.20416 0.98765 0.91699 0.98083 0.92806 0.98403 0.98505 0.91579 0.91459 0.91580 0.91732 0.74397 0.73913 0.89930 0.88802 0.88073 0.90318 0.76370 0.91615 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.11 -4.11 5.27 30.59 0.16 -3.95 16 11 C 0.13 4.33 5.67 86.38 0.49 4.82 16 12 N -0.69 -20.00 5.55 -464.41 -2.58 -22.58 16 13 C 0.50 14.34 7.89 87.27 0.69 15.03 16 14 O -0.55 -17.71 16.48 -3.23 -0.05 -17.76 16 15 C 0.52 12.74 7.86 87.27 0.69 13.43 16 16 O -0.54 -15.59 16.13 -3.24 -0.05 -15.65 16 17 N -0.68 -12.15 5.07 -443.23 -2.25 -14.40 16 18 C 0.15 2.37 2.40 45.13 0.11 2.48 16 19 H 0.08 1.58 7.53 -2.39 -0.02 1.56 16 20 C -0.12 -1.06 5.33 30.73 0.16 -0.90 16 21 C -0.03 -0.22 6.28 30.03 0.19 -0.03 16 22 C -0.26 -3.27 5.89 -20.08 -0.12 -3.39 16 23 C 0.08 0.65 11.96 83.31 1.00 1.65 16 24 N -0.48 -5.91 7.38 -57.77 -0.43 -6.33 16 25 H 0.45 2.63 8.96 -213.19 -1.91 0.72 16 26 N -0.33 -7.03 12.68 -47.09 -0.60 -7.63 16 27 C 0.07 1.33 7.10 43.45 0.31 1.64 16 28 C -0.05 -0.91 5.88 30.05 0.18 -0.73 16 29 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 30 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.42 11.04 7.95 -92.71 -0.74 10.30 16 37 H 0.42 6.27 8.08 -92.71 -0.75 5.52 16 38 H 0.08 0.64 8.10 -2.39 -0.02 0.62 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 41 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.22 -0.21 8.06 -2.91 -0.02 -0.23 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -76.08 372.79 -1.29 -77.38 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -2.34 Total: 15.36 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 4.69 Total: 1.73 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -5.56 Total: -107.16 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.11 Total: -33.41 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -76.08 -1.29 -77.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117266444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.168 kcal (2) G-P(sol) polarization free energy of solvation -76.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds