Wall clock time and date at job start Tue Mar 31 2020 12:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00427 * 2 1 4 4 H 1.48495 * 109.46825 * 239.99876 * 3 2 1 5 5 H 1.48501 * 109.46569 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47066 * 119.99485 * 3 2 1 7 7 C 1.37883 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00309 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46823 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46796 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.46740 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99782 * 179.97438 * 12 11 10 14 14 O 1.21348 * 120.00020 * 0.02562 * 13 12 11 15 15 C 1.49452 * 120.00124 * 180.02562 * 13 12 11 16 16 O 1.21355 * 120.00156 * 0.02562 * 15 13 12 17 17 N 1.34783 * 119.99925 * 180.02562 * 15 13 12 18 18 C 1.46498 * 119.99861 * 180.02562 * 17 15 13 19 19 H 1.08999 * 109.42556 * 35.11191 * 18 17 15 20 20 C 1.53016 * 109.42778 * 154.99623 * 18 17 15 21 21 C 1.53382 * 109.73058 * 191.73208 * 20 18 17 22 22 C 1.50879 * 108.23017 * 309.42383 * 21 20 18 23 23 C 1.34487 * 128.39947 * 196.66226 * 22 21 20 24 24 N 1.35195 * 107.64894 * 179.87796 * 23 22 21 25 25 H 0.97004 * 126.00589 * 180.02562 * 24 23 22 26 26 N 1.40314 * 107.99457 * 0.04423 * 24 23 22 27 27 C 1.30133 * 108.12221 * 0.04258 * 26 24 23 28 28 C 1.50945 * 128.29132 * 179.87105 * 27 26 24 29 29 H 0.96999 * 119.99940 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47542 * 59.99554 * 9 7 2 31 31 H 1.09005 * 109.47018 * 299.99608 * 9 7 2 32 32 H 1.08997 * 109.47551 * 60.00025 * 10 9 7 33 33 H 1.08991 * 109.47103 * 299.99468 * 10 9 7 34 34 H 1.08997 * 109.46738 * 59.99910 * 11 10 9 35 35 H 1.08991 * 109.47173 * 299.99808 * 11 10 9 36 36 H 0.97001 * 120.00560 * 0.02562 * 12 11 10 37 37 H 0.96988 * 120.00120 * 359.97438 * 17 15 13 38 38 H 1.09009 * 109.42468 * 71.65213 * 20 18 17 39 39 H 1.09003 * 109.38751 * 311.79058 * 20 18 17 40 40 H 1.09002 * 109.71795 * 69.12101 * 21 20 18 41 41 H 1.09001 * 109.72105 * 189.72524 * 21 20 18 42 42 H 1.07996 * 126.16307 * 359.87430 * 23 22 21 43 43 H 1.09000 * 109.71571 * 77.05418 * 28 27 26 44 44 H 1.09000 * 109.74961 * 316.43717 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4321 -6.1006 0.0006 13 6 1.9828 -7.3713 0.0015 14 8 0.7898 -7.5930 0.0024 15 6 2.9540 -8.5073 0.0014 16 8 4.1471 -8.2856 0.0010 17 7 2.5046 -9.7780 0.0019 18 6 3.4566 -10.8916 0.0024 19 1 4.3313 -10.6205 0.5936 20 6 2.7932 -12.1280 0.6127 21 6 3.8532 -13.2022 0.8869 22 6 4.6655 -13.3954 -0.3697 23 6 5.4780 -14.4180 -0.6903 24 7 5.9917 -14.1651 -1.9150 25 1 6.6108 -14.7315 -2.4018 26 7 5.4725 -12.9392 -2.3581 27 6 4.6807 -12.4774 -1.4344 28 6 3.8882 -11.1927 -1.4382 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8904 32 1 2.8719 -3.6044 0.8905 33 1 2.8718 -3.6044 -0.8894 34 1 0.8532 -5.0451 -0.8886 35 1 0.8538 -5.0446 0.8913 36 1 3.3858 -5.9234 0.0002 37 1 1.5511 -9.9552 0.0026 38 1 2.0502 -12.5207 -0.0816 39 1 2.3056 -11.8526 1.5479 40 1 4.5038 -12.8779 1.6992 41 1 3.3661 -14.1390 1.1576 42 1 5.6830 -15.2847 -0.0794 43 1 3.0072 -11.3059 -2.0700 44 1 4.5081 -10.3787 -1.8142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117266447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:27 Heat of formation + Delta-G solvation = -44.835738 kcal Electronic energy + Delta-G solvation = -25430.356886 eV Core-core repulsion = 21575.215209 eV Total energy + Delta-G solvation = -3855.141676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45082 -41.69400 -39.83541 -37.97356 -37.10076 -35.30595 -34.54323 -33.10619 -33.02286 -30.75672 -29.49013 -28.93557 -26.56584 -25.16799 -23.91465 -22.54517 -22.34667 -21.95140 -21.31641 -20.13473 -19.30305 -18.49953 -18.42877 -17.95856 -17.16828 -16.89112 -16.51826 -16.23466 -16.19292 -16.04195 -15.34239 -15.19320 -14.75437 -14.64003 -14.56316 -14.25327 -13.98659 -13.77970 -13.75910 -13.49178 -13.00072 -12.91722 -12.72309 -12.55991 -12.47755 -12.42481 -12.23727 -11.83860 -11.68231 -11.54323 -11.36506 -11.23816 -10.69392 -10.53164 -10.43281 -10.34369 -10.25710 -9.33333 -8.18292 -6.29149 0.32074 0.98594 1.27022 1.42706 1.45216 1.53101 1.76105 1.99961 2.13201 2.42501 2.63048 3.15427 3.37107 3.55314 3.71126 3.87725 4.04330 4.10117 4.20121 4.26335 4.33312 4.45949 4.54346 4.63660 4.66378 4.82404 4.88522 4.91489 4.93317 4.97903 5.16243 5.17712 5.20535 5.24928 5.29821 5.36663 5.52608 5.70037 5.72243 5.85574 5.92003 6.24233 6.35807 6.50453 6.72044 6.73279 6.87457 6.93053 7.39981 8.93249 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033928 B = 0.001758 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.081126 B =15921.471799 C =16387.509877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.687 5.687 13 C 0.502 3.498 14 O -0.546 6.546 15 C 0.516 3.484 16 O -0.539 6.539 17 N -0.682 5.682 18 C 0.154 3.846 19 H 0.084 0.916 20 C -0.121 4.121 21 C -0.030 4.030 22 C -0.259 4.259 23 C 0.077 3.923 24 N -0.480 5.480 25 H 0.451 0.549 26 N -0.333 5.333 27 C 0.070 3.930 28 C -0.049 4.049 29 H 0.263 0.737 30 H -0.004 1.004 31 H -0.003 1.003 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.419 0.581 37 H 0.423 0.577 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.220 0.780 43 H 0.094 0.906 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 -34.934 1.753 36.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.340 5.340 13 C 0.282 3.718 14 O -0.424 6.424 15 C 0.297 3.703 16 O -0.416 6.416 17 N -0.335 5.335 18 C 0.049 3.951 19 H 0.103 0.897 20 C -0.159 4.159 21 C -0.068 4.068 22 C -0.271 4.271 23 C -0.069 4.069 24 N -0.190 5.190 25 H 0.297 0.703 26 N -0.157 5.157 27 C -0.098 4.098 28 C -0.090 4.090 29 H 0.072 0.928 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.256 0.744 37 H 0.261 0.739 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.236 0.764 43 H 0.112 0.888 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.148 -34.620 0.609 36.081 hybrid contribution 0.186 0.854 0.121 0.882 sum 10.333 -33.766 0.730 35.319 Atomic orbital electron populations 1.70087 1.07760 1.27816 1.51531 1.25973 0.95763 1.03352 0.94797 0.85505 0.78234 0.78174 0.79146 1.19265 1.21022 1.19167 1.21656 0.93697 0.92177 1.50665 0.91828 1.18936 0.94356 0.92551 0.95469 1.21643 0.98638 0.91984 1.02168 1.21473 0.91574 0.84479 1.02042 1.45894 1.12245 1.04734 1.71095 1.20324 0.88523 0.84748 0.78158 1.90751 1.16936 1.85013 1.49669 1.19985 0.87921 0.84838 0.77584 1.90774 1.16762 1.85004 1.49054 1.45778 1.12256 1.03771 1.71689 1.21095 0.92650 0.85998 0.95320 0.89740 1.21859 0.98762 0.92852 1.02386 1.19966 0.95010 0.99384 0.92483 1.20482 1.08875 0.97213 1.00512 1.22730 0.95400 1.00895 0.87900 1.46418 1.39455 1.17561 1.15562 0.70260 1.76968 1.16574 0.97964 1.24171 1.22306 0.96883 0.97384 0.93211 1.20416 0.98753 0.91694 0.98094 0.92802 0.98526 0.98425 0.91459 0.91581 0.91746 0.91578 0.74398 0.73911 0.89933 0.88792 0.90330 0.88079 0.76389 0.88822 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -30.44 9.11 25.60 0.23 -30.20 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.11 -4.11 5.27 30.60 0.16 -3.95 16 11 C 0.13 4.34 5.67 86.38 0.49 4.83 16 12 N -0.69 -20.01 5.55 -464.42 -2.58 -22.59 16 13 C 0.50 14.35 7.89 87.27 0.69 15.04 16 14 O -0.55 -17.72 16.48 -3.24 -0.05 -17.77 16 15 C 0.52 12.75 7.85 87.27 0.69 13.43 16 16 O -0.54 -15.60 16.14 -3.26 -0.05 -15.65 16 17 N -0.68 -12.16 5.07 -443.24 -2.25 -14.40 16 18 C 0.15 2.37 2.40 45.12 0.11 2.48 16 19 H 0.08 1.58 7.54 -2.39 -0.02 1.56 16 20 C -0.12 -1.06 5.33 30.73 0.16 -0.90 16 21 C -0.03 -0.22 6.28 30.03 0.19 -0.03 16 22 C -0.26 -3.29 5.89 -20.09 -0.12 -3.40 16 23 C 0.08 0.66 11.95 83.32 1.00 1.65 16 24 N -0.48 -5.89 7.37 -57.94 -0.43 -6.32 16 25 H 0.45 2.62 8.96 -213.18 -1.91 0.71 16 26 N -0.33 -7.05 12.68 -47.08 -0.60 -7.64 16 27 C 0.07 1.33 7.10 43.46 0.31 1.64 16 28 C -0.05 -0.91 5.88 30.05 0.18 -0.73 16 29 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.42 11.04 7.94 -92.71 -0.74 10.31 16 37 H 0.42 6.27 8.07 -92.72 -0.75 5.52 16 38 H 0.08 0.64 8.10 -2.38 -0.02 0.62 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.22 -0.20 8.06 -2.91 -0.02 -0.23 16 43 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -76.00 372.77 -1.29 -77.29 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -2.34 Total: 15.55 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 4.69 Total: 1.68 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -5.56 Total: -107.16 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.11 Total: -33.42 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -76.00 -1.29 -77.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117266447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.455 kcal (2) G-P(sol) polarization free energy of solvation -75.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds