Wall clock time and date at job start Tue Mar 31 2020 12:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 116.99881 * 2 1 4 4 O 1.20829 * 120.00188 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99776 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.46797 * 60.00724 * 5 3 2 7 7 C 1.52997 * 109.47135 * 180.02562 * 5 3 2 8 8 N 1.46505 * 109.47212 * 295.00226 * 7 5 3 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 5 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99996 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00227 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46792 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46980 * 119.99883 * 17 15 13 20 20 H 1.48498 * 109.46996 * 239.99688 * 17 15 13 21 21 C 1.52994 * 109.47409 * 300.00933 * 5 3 2 22 22 C 1.50701 * 109.47248 * 64.99390 * 21 5 3 23 23 C 1.38651 * 120.79312 * 269.72055 * 22 21 5 24 24 C 1.38205 * 119.16235 * 179.80201 * 23 22 21 25 25 N 1.31867 * 120.76450 * 0.48571 * 24 23 22 26 26 C 1.31869 * 121.72667 * 359.74221 * 25 24 23 27 27 C 1.38209 * 120.76478 * 0.02579 * 26 25 24 28 28 H 1.08997 * 109.46946 * 59.99136 * 1 2 3 29 29 H 1.08997 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46517 * 299.99579 * 1 2 3 31 31 H 1.09002 * 109.47153 * 175.00218 * 7 5 3 32 32 H 1.09001 * 109.46832 * 55.00409 * 7 5 3 33 33 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 34 34 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 35 35 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 36 36 H 1.09001 * 109.47289 * 299.99918 * 12 11 9 37 37 H 1.09002 * 109.47153 * 60.00002 * 12 11 9 38 38 H 0.96993 * 120.00405 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.47698 * 184.99747 * 21 5 3 40 40 H 1.09009 * 109.47010 * 304.99752 * 21 5 3 41 41 H 1.07999 * 120.41504 * 0.02562 * 23 22 21 42 42 H 1.07997 * 119.61841 * 180.20868 * 24 23 22 43 43 H 1.08000 * 119.62326 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.41943 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9565 0.7806 -0.8893 7 6 4.0002 2.7420 0.0011 8 7 3.5794 3.3762 -1.2507 9 6 3.8549 4.6765 -1.4732 10 8 4.4517 5.3216 -0.6374 11 6 3.4225 5.3287 -2.7611 12 6 3.8562 6.7959 -2.7605 13 6 3.4233 7.4483 -4.0481 14 1 2.8922 6.8737 -4.7927 15 6 3.7060 8.7784 -4.2762 16 7 4.3531 9.4779 -3.3698 17 14 3.1699 9.5868 -5.8727 18 1 2.4639 8.5914 -6.7187 19 1 2.2555 10.7177 -5.5721 20 1 4.3636 10.0941 -6.5957 21 6 4.1130 0.5814 1.2500 22 6 3.7908 -0.8896 1.1897 23 6 2.6118 -1.3806 1.7294 24 6 2.3484 -2.7351 1.6517 25 7 3.2071 -3.5577 1.0816 26 6 4.3400 -3.1267 0.5621 27 6 4.6691 -1.7848 0.5984 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 5.0850 2.8001 0.0911 32 1 3.5377 3.2573 0.8429 33 1 3.1018 2.8603 -1.9190 34 1 3.8857 4.8136 -3.6027 35 1 2.3378 5.2702 -2.8517 36 1 3.3933 7.3113 -1.9190 37 1 4.9409 6.8541 -2.6701 38 1 4.5523 10.4135 -3.5304 39 1 5.1938 0.7149 1.2963 40 1 3.6546 1.0176 2.1376 41 1 1.9065 -0.7126 2.2012 42 1 1.4308 -3.1251 2.0666 43 1 5.0185 -3.8303 0.1029 44 1 5.5986 -1.4380 0.1716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117669710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:06 Heat of formation + Delta-G solvation = -99.648814 kcal Electronic energy + Delta-G solvation = -26387.281904 eV Core-core repulsion = 22497.470603 eV Total energy + Delta-G solvation = -3889.811301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24732 -40.22477 -39.07545 -37.05271 -36.09459 -34.07130 -33.41215 -31.65409 -31.51216 -30.76490 -28.17466 -27.10163 -25.47604 -24.03894 -23.79155 -22.47334 -21.42463 -20.68163 -19.51002 -18.11648 -17.39160 -17.14133 -16.81037 -16.65221 -16.31746 -15.85707 -15.59186 -15.52270 -15.00460 -14.40938 -14.37507 -14.26585 -14.00014 -13.64914 -13.49342 -13.06686 -12.98557 -12.85541 -12.53100 -12.36923 -12.13585 -12.01658 -11.82079 -11.59947 -11.12882 -11.09586 -10.92676 -10.65321 -10.56301 -9.92679 -9.87793 -9.79550 -9.63895 -9.39619 -9.14824 -8.98114 -8.77752 -8.29911 -5.93983 -3.98043 0.82833 0.90489 1.89245 2.36052 3.29802 3.33884 3.37497 3.41183 3.44592 3.57825 3.96428 4.15656 4.21063 4.42854 4.48310 4.52860 4.59089 4.73830 4.76494 4.80929 4.82198 4.88431 5.06980 5.22027 5.22599 5.39250 5.40925 5.44079 5.46041 5.61288 5.65473 5.82515 5.97756 6.07737 6.26384 6.29712 6.38172 6.68051 6.92842 7.44480 7.66910 7.77269 7.87421 7.89826 8.09989 8.41564 8.80802 9.10797 9.65264 11.17056 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026478 B = 0.002251 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.216648 B =12434.586956 C =12822.686164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.349 6.349 3 C 0.454 3.546 4 O -0.484 6.484 5 C -0.086 4.086 6 H 0.117 0.883 7 C 0.135 3.865 8 N -0.739 5.739 9 C 0.514 3.486 10 O -0.535 6.535 11 C -0.130 4.130 12 C 0.037 3.963 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.073 4.073 22 C -0.043 4.043 23 C -0.133 4.133 24 C 0.095 3.905 25 N -0.487 5.487 26 C 0.094 3.906 27 C -0.164 4.164 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.395 0.605 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.260 0.740 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 -28.423 10.339 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.266 6.266 3 C 0.295 3.705 4 O -0.370 6.370 5 C -0.105 4.105 6 H 0.135 0.865 7 C 0.010 3.990 8 N -0.392 5.392 9 C 0.303 3.697 10 O -0.411 6.411 11 C -0.169 4.169 12 C -0.001 4.001 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.111 4.111 22 C -0.051 4.051 23 C -0.153 4.153 24 C -0.062 4.062 25 N -0.196 5.196 26 C -0.063 4.063 27 C -0.184 4.184 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.228 0.772 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.146 0.854 42 H 0.169 0.831 43 H 0.171 0.829 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.284 -28.337 10.962 30.561 hybrid contribution -0.640 1.177 -1.185 1.789 sum -3.925 -27.161 9.777 29.132 Atomic orbital electron populations 1.23271 0.76643 1.03542 1.02776 1.86687 1.23129 1.32866 1.83896 1.23660 0.91797 0.81749 0.73279 1.90784 1.66685 1.36042 1.43453 1.21479 0.88232 0.98858 1.01973 0.86486 1.21121 1.00273 0.88208 0.89368 1.46054 1.61361 1.12222 1.19611 1.21492 0.77959 0.80312 0.89973 1.90664 1.40434 1.62770 1.47196 1.21856 1.01751 1.01099 0.92241 1.18901 0.97491 0.86568 0.97113 1.21267 1.36898 0.95448 1.02746 0.92588 1.25034 0.95265 0.97463 0.96707 1.70010 1.40351 1.08478 1.34025 0.86535 0.78322 0.79423 0.83674 1.19780 1.21033 1.21022 1.20561 1.03324 0.90390 0.96794 1.20086 0.94169 0.95289 0.95575 1.21903 0.96729 0.96764 0.99862 1.22655 0.98046 0.89888 0.95621 1.67646 1.03293 1.39753 1.08906 1.22706 0.93673 0.93953 0.95984 1.22046 1.00799 0.94535 1.00979 0.91767 0.88260 0.91858 0.90001 0.90661 0.77212 0.90330 0.90270 0.95810 0.95802 0.93033 0.88058 0.89401 0.85435 0.83135 0.82931 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -2.89 6.49 -39.25 -0.25 -3.14 16 3 C 0.45 4.49 6.84 36.01 0.25 4.74 16 4 O -0.48 -6.59 15.04 -18.75 -0.28 -6.87 16 5 C -0.09 -0.68 2.36 -91.77 -0.22 -0.90 16 6 H 0.12 0.76 8.14 -51.92 -0.42 0.34 16 7 C 0.13 1.55 4.62 -4.04 -0.02 1.53 16 8 N -0.74 -10.59 4.81 -60.29 -0.29 -10.88 16 9 C 0.51 10.14 7.83 -10.99 -0.09 10.05 16 10 O -0.54 -12.77 15.98 5.56 0.09 -12.68 16 11 C -0.13 -2.72 5.64 -27.88 -0.16 -2.87 16 12 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 13 C -0.53 -15.16 9.11 -34.44 -0.31 -15.48 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 17 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.07 -0.44 4.87 -27.89 -0.14 -0.57 16 22 C -0.04 -0.29 4.56 -104.32 -0.48 -0.76 16 23 C -0.13 -0.90 7.05 -39.44 -0.28 -1.18 16 24 C 0.09 0.69 11.18 -17.55 -0.20 0.50 16 25 N -0.49 -4.34 10.36 -13.25 -0.14 -4.47 16 26 C 0.09 0.68 11.18 -17.55 -0.20 0.48 16 27 C -0.16 -1.03 9.82 -39.44 -0.39 -1.41 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.01 7.96 -51.93 -0.41 0.60 16 33 H 0.39 4.79 8.16 -40.82 -0.33 4.45 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.10 0.45 8.10 -51.93 -0.42 0.03 16 40 H 0.09 0.52 8.10 -51.92 -0.42 0.09 16 41 H 0.13 0.76 7.62 -52.49 -0.40 0.36 16 42 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.13 0.57 8.06 -52.48 -0.42 0.14 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -37.92 375.50 -7.46 -45.38 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.60 Total: -0.75 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.36 Total: -2.13 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.31 Total: -42.38 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.45 Total: -22.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.92 -7.46 -45.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117669710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.267 kcal (2) G-P(sol) polarization free energy of solvation -37.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds